Wall clock time and date at job start Tue Mar 31 2020 05:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46665 * 259.86294 * 3 2 1 5 5 C 1.37088 * 119.99906 * 97.91272 * 4 3 2 6 6 H 1.08008 * 120.00083 * 156.62597 * 5 4 3 7 7 C 1.38956 * 120.00293 * 336.62457 * 5 4 3 8 8 N 1.31408 * 119.99555 * 349.73694 * 7 5 4 9 9 Si 1.86796 * 120.00197 * 169.73404 * 7 5 4 10 10 H 1.48498 * 109.47159 * 60.00155 * 9 7 5 11 11 H 1.48503 * 109.47142 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47183 * 300.00462 * 9 7 5 13 13 C 1.34778 * 119.99701 * 277.91042 * 4 3 2 14 14 O 1.21292 * 119.99624 * 180.02562 * 13 4 3 15 15 C 1.50698 * 120.00193 * 0.02562 * 13 4 3 16 16 H 1.09001 * 115.54962 * 34.27945 * 15 13 4 17 17 C 1.53009 * 117.49992 * 248.60927 * 15 13 4 18 18 C 1.53001 * 117.49608 * 179.97438 * 15 13 4 19 19 H 1.08999 * 117.50294 * 0.02562 * 18 15 13 20 20 C 1.50704 * 117.49838 * 214.98031 * 18 15 13 21 21 C 1.38249 * 119.99151 * 299.72976 * 20 18 15 22 22 C 1.38192 * 120.02244 * 179.72562 * 21 20 18 23 23 C 1.38384 * 120.01638 * 0.54741 * 22 21 20 24 24 Cl 1.73601 * 120.00941 * 179.75114 * 23 22 21 25 25 C 1.38310 * 119.98543 * 359.72351 * 23 22 21 26 26 C 1.38335 * 119.99634 * 119.99854 * 20 18 15 27 27 Cl 1.73607 * 120.00244 * 359.97438 * 26 20 18 28 28 H 1.08991 * 109.47103 * 19.86335 * 3 2 1 29 29 H 1.08998 * 109.46828 * 139.86858 * 3 2 1 30 30 H 0.96997 * 120.00086 * 179.97438 * 8 7 5 31 31 H 1.09003 * 117.49368 * 0.02562 * 17 15 13 32 32 H 1.08989 * 117.49844 * 144.99572 * 17 15 13 33 33 H 1.07999 * 119.98382 * 359.97438 * 21 20 18 34 34 H 1.08005 * 119.99156 * 180.25047 * 22 21 20 35 35 H 1.07996 * 120.01484 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0962 0.2440 1.3598 5 6 3.4792 -0.8093 2.1493 6 1 4.1684 -0.6498 2.9654 7 6 2.9807 -2.0821 1.8996 8 7 1.9959 -2.2460 1.0451 9 14 3.7104 -3.5600 2.7785 10 1 3.5492 -3.3929 4.2453 11 1 3.0083 -4.7930 2.3402 12 1 5.1541 -3.6690 2.4485 13 6 3.1687 1.5034 1.8344 14 8 3.5733 1.7048 2.9599 15 6 2.7472 2.6611 0.9666 16 1 1.9168 2.4628 0.2889 17 6 3.8402 3.6169 0.4839 18 6 2.8526 4.0661 1.5632 19 1 3.2272 4.1531 2.5831 20 6 1.8003 5.0702 1.1688 21 6 1.6419 5.4199 -0.1593 22 6 0.6734 6.3363 -0.5223 23 6 -0.1311 6.9131 0.4448 24 17 -1.3434 8.0691 -0.0106 25 6 0.0306 6.5678 1.7744 26 6 0.9966 5.6460 2.1365 27 17 1.1999 5.2114 3.8049 28 1 2.9718 -0.9656 -0.3491 29 1 2.9710 0.7865 -0.6624 30 1 1.6481 -3.1344 0.8705 31 1 4.8642 3.4080 0.7937 32 1 3.7288 4.0473 -0.5112 33 1 2.2728 4.9737 -0.9138 34 1 0.5474 6.6061 -1.5604 35 1 -0.5972 7.0173 2.5294 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089768368.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:19 Heat of formation + Delta-G solvation = 41.529097 kcal Electronic energy + Delta-G solvation = -23626.576969 eV Core-core repulsion = 19870.812977 eV Total energy + Delta-G solvation = -3755.763992 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.033 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16214 -38.94442 -37.05118 -36.55351 -36.14304 -35.46647 -34.27832 -31.83833 -31.09611 -30.55508 -27.51639 -25.64075 -24.15924 -23.24625 -22.61409 -20.63446 -18.89335 -17.89636 -17.81467 -16.89919 -16.22523 -15.95667 -15.47495 -14.94000 -14.69383 -14.26365 -14.18677 -14.04682 -13.49877 -13.45224 -13.02203 -12.56406 -12.48832 -12.22187 -12.05577 -11.88139 -11.63056 -11.50963 -11.32554 -11.28204 -11.17488 -11.15052 -10.74713 -10.59807 -10.57437 -10.45841 -10.37513 -10.15446 -9.26831 -9.12361 -8.73765 -8.51644 -8.04140 -6.49762 -4.08916 0.77189 0.89894 1.70095 2.20640 3.03881 3.15767 3.20308 3.22393 3.44413 3.68390 3.96184 4.07704 4.20067 4.37305 4.49884 4.70824 4.80068 4.91567 4.96345 5.01444 5.17234 5.21532 5.26960 5.32425 5.48734 5.71823 5.76193 5.81139 5.96543 6.01775 6.11138 6.20068 6.36202 6.43939 6.58361 7.42582 7.89385 8.25341 8.72865 8.96468 9.15407 9.70209 10.55440 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.017883 B = 0.003108 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.392345 B = 9006.616838 C = 9563.954533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.246 3.754 3 C 0.222 3.778 4 N -0.439 5.439 5 C -0.308 4.308 6 H 0.106 0.894 7 C 0.032 3.968 8 N -0.887 5.887 9 Si 0.933 3.067 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.486 3.514 14 O -0.567 6.567 15 C -0.155 4.155 16 H 0.114 0.886 17 C -0.147 4.147 18 C -0.102 4.102 19 H 0.135 0.865 20 C -0.027 4.027 21 C -0.098 4.098 22 C -0.102 4.102 23 C -0.033 4.033 24 Cl -0.066 7.066 25 C -0.101 4.101 26 C -0.019 4.019 27 Cl -0.044 7.044 28 H 0.134 0.866 29 H 0.081 0.919 30 H 0.274 0.726 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.726 16.071 -6.154 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.072 4.072 3 C 0.095 3.905 4 N -0.159 5.159 5 C -0.435 4.435 6 H 0.123 0.877 7 C -0.171 4.171 8 N -0.526 5.526 9 Si 0.760 3.240 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.274 3.726 14 O -0.449 6.449 15 C -0.176 4.176 16 H 0.132 0.868 17 C -0.184 4.184 18 C -0.121 4.121 19 H 0.152 0.848 20 C -0.028 4.028 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.060 4.060 24 Cl -0.037 7.037 25 C -0.120 4.120 26 C -0.047 4.047 27 Cl -0.015 7.015 28 H 0.151 0.849 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.937 16.027 -5.533 16.981 hybrid contribution 0.244 -0.928 0.468 1.068 sum -0.694 15.099 -5.065 15.940 Atomic orbital electron populations 1.80912 1.13649 1.12109 1.08863 1.29381 0.95439 0.90220 0.92158 1.18791 0.81385 1.04289 0.86035 1.43453 1.56216 1.04999 1.11199 1.19682 1.25198 0.85135 1.13519 0.87657 1.25349 0.95011 0.99517 0.97264 1.69731 1.23479 1.24308 1.35107 0.85871 0.78882 0.79559 0.79712 1.19811 1.20946 1.19683 1.19158 0.83455 0.83135 0.86829 1.90552 1.50421 1.84217 1.19711 1.22442 1.02186 0.90313 1.02666 0.86824 1.23119 0.95908 1.01244 0.98151 1.21089 0.97828 0.92528 1.00633 0.84757 1.19219 0.95404 0.95903 0.92291 1.21044 0.98032 0.97250 0.95330 1.21103 0.94854 0.96681 0.99457 1.20702 0.94887 0.96594 0.93819 1.98375 1.54567 1.58125 1.92622 1.20864 0.98232 0.97736 0.95197 1.20628 0.98234 0.98876 0.86917 1.98414 1.96468 1.91990 1.14651 0.84886 0.90139 0.91515 0.87392 0.87960 0.83745 0.84285 0.83931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.22 18.54 42.15 0.78 -10.44 16 2 C 0.25 5.36 12.64 -20.76 -0.26 5.10 16 3 C 0.22 4.31 4.80 -6.82 -0.03 4.27 16 4 N -0.44 -10.00 2.61 -117.93 -0.31 -10.31 16 5 C -0.31 -7.77 9.28 -14.94 -0.14 -7.91 16 6 H 0.11 2.78 7.42 -52.48 -0.39 2.39 16 7 C 0.03 0.77 5.09 -17.47 -0.09 0.68 16 8 N -0.89 -21.99 9.18 55.50 0.51 -21.48 16 9 Si 0.93 19.57 29.56 -169.99 -5.03 14.54 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 C 0.49 10.71 7.32 -10.99 -0.08 10.63 16 14 O -0.57 -14.41 15.96 5.55 0.09 -14.32 16 15 C -0.15 -2.58 4.45 -91.77 -0.41 -2.99 16 16 H 0.11 1.85 6.62 -51.93 -0.34 1.50 16 17 C -0.15 -1.85 9.56 -26.71 -0.26 -2.11 16 18 C -0.10 -1.53 5.06 -91.75 -0.46 -1.99 16 19 H 0.13 2.28 6.69 -51.93 -0.35 1.93 16 20 C -0.03 -0.36 5.61 -104.58 -0.59 -0.95 16 21 C -0.10 -1.06 9.30 -39.59 -0.37 -1.42 16 22 C -0.10 -1.02 9.83 -39.54 -0.39 -1.41 16 23 C -0.03 -0.36 6.32 -39.50 -0.25 -0.61 16 24 Cl -0.07 -0.65 28.96 -51.86 -1.50 -2.15 16 25 C -0.10 -1.18 9.62 -39.51 -0.38 -1.56 16 26 C -0.02 -0.26 6.31 -39.50 -0.25 -0.51 16 27 Cl -0.04 -0.64 27.42 -51.86 -1.42 -2.07 16 28 H 0.13 2.66 6.38 -51.93 -0.33 2.33 16 29 H 0.08 1.18 7.10 -51.93 -0.37 0.81 16 30 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.10 0.94 6.17 -51.94 -0.32 0.62 16 33 H 0.14 1.22 6.01 -52.49 -0.32 0.90 16 34 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 337.71 15.07 5.09 5.09 Total: -1.00 -30.08 337.71 -8.56 -38.64 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -2.82 Total: 3.27 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -3.95 Total: -0.78 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.98 Total: -42.23 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.09 Total: -14.32 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -2.92 Total: -4.21 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.08 -8.56 -38.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089768368.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.170 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds