Wall clock time and date at job start Tue Mar 31 2020 05:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46665 * 259.86294 * 3 2 1 5 5 C 1.37088 * 119.99906 * 97.91272 * 4 3 2 6 6 H 1.08008 * 120.00083 * 156.62597 * 5 4 3 7 7 C 1.38956 * 120.00293 * 336.62457 * 5 4 3 8 8 N 1.31408 * 119.99555 * 349.73694 * 7 5 4 9 9 Si 1.86796 * 120.00197 * 169.73404 * 7 5 4 10 10 H 1.48498 * 109.47159 * 60.00155 * 9 7 5 11 11 H 1.48503 * 109.47142 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47183 * 300.00462 * 9 7 5 13 13 C 1.34778 * 119.99701 * 277.91042 * 4 3 2 14 14 O 1.21292 * 119.99624 * 180.02562 * 13 4 3 15 15 C 1.50698 * 120.00193 * 0.02562 * 13 4 3 16 16 H 1.09001 * 115.54962 * 34.27945 * 15 13 4 17 17 C 1.53009 * 117.49992 * 248.60927 * 15 13 4 18 18 C 1.53001 * 117.49608 * 179.97438 * 15 13 4 19 19 H 1.08999 * 117.50294 * 0.02562 * 18 15 13 20 20 C 1.50704 * 117.49838 * 214.98031 * 18 15 13 21 21 C 1.38249 * 119.99151 * 299.72976 * 20 18 15 22 22 C 1.38192 * 120.02244 * 179.72562 * 21 20 18 23 23 C 1.38384 * 120.01638 * 0.54741 * 22 21 20 24 24 Cl 1.73601 * 120.00941 * 179.75114 * 23 22 21 25 25 C 1.38310 * 119.98543 * 359.72351 * 23 22 21 26 26 C 1.38335 * 119.99634 * 119.99854 * 20 18 15 27 27 Cl 1.73607 * 120.00244 * 359.97438 * 26 20 18 28 28 H 1.08991 * 109.47103 * 19.86335 * 3 2 1 29 29 H 1.08998 * 109.46828 * 139.86858 * 3 2 1 30 30 H 0.96997 * 120.00086 * 179.97438 * 8 7 5 31 31 H 1.09003 * 117.49368 * 0.02562 * 17 15 13 32 32 H 1.08989 * 117.49844 * 144.99572 * 17 15 13 33 33 H 1.07999 * 119.98382 * 359.97438 * 21 20 18 34 34 H 1.08005 * 119.99156 * 180.25047 * 22 21 20 35 35 H 1.07996 * 120.01484 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0962 0.2440 1.3598 5 6 3.4792 -0.8093 2.1493 6 1 4.1684 -0.6498 2.9654 7 6 2.9807 -2.0821 1.8996 8 7 1.9959 -2.2460 1.0451 9 14 3.7104 -3.5600 2.7785 10 1 3.5492 -3.3929 4.2453 11 1 3.0083 -4.7930 2.3402 12 1 5.1541 -3.6690 2.4485 13 6 3.1687 1.5034 1.8344 14 8 3.5733 1.7048 2.9599 15 6 2.7472 2.6611 0.9666 16 1 1.9168 2.4628 0.2889 17 6 3.8402 3.6169 0.4839 18 6 2.8526 4.0661 1.5632 19 1 3.2272 4.1531 2.5831 20 6 1.8003 5.0702 1.1688 21 6 1.6419 5.4199 -0.1593 22 6 0.6734 6.3363 -0.5223 23 6 -0.1311 6.9131 0.4448 24 17 -1.3434 8.0691 -0.0106 25 6 0.0306 6.5678 1.7744 26 6 0.9966 5.6460 2.1365 27 17 1.1999 5.2114 3.8049 28 1 2.9718 -0.9656 -0.3491 29 1 2.9710 0.7865 -0.6624 30 1 1.6481 -3.1344 0.8705 31 1 4.8642 3.4080 0.7937 32 1 3.7288 4.0473 -0.5112 33 1 2.2728 4.9737 -0.9138 34 1 0.5474 6.6061 -1.5604 35 1 -0.5972 7.0173 2.5294 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089768368.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:18 Heat of formation + Delta-G solvation = 26.470553 kcal Electronic energy + Delta-G solvation = -23627.229956 eV Core-core repulsion = 19870.812977 eV Total energy + Delta-G solvation = -3756.416980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.033 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.30413 -40.31879 -38.11887 -37.70539 -37.40386 -36.85384 -36.05806 -33.67345 -31.95455 -31.51737 -29.20522 -27.30520 -25.14391 -24.56513 -23.64737 -21.66460 -20.41792 -19.68475 -18.87880 -18.24415 -17.82901 -17.09955 -16.56551 -16.39055 -15.94409 -15.74873 -15.15507 -15.10228 -14.95755 -14.87309 -14.70912 -13.80663 -13.76012 -13.40424 -13.36824 -13.24158 -13.10373 -12.94751 -12.88663 -12.51245 -12.41223 -12.26899 -12.18563 -12.10205 -11.97763 -11.79617 -11.46084 -11.42429 -11.08890 -10.44333 -9.99166 -9.87506 -9.51451 -8.36251 -6.01413 -0.13074 0.04453 0.82418 1.27361 1.40423 1.46809 1.55361 1.75349 2.02036 2.25548 2.32882 2.36086 2.93404 3.02022 3.12260 3.51830 3.63598 3.65914 3.82408 3.92056 3.97768 4.11388 4.24377 4.32009 4.39274 4.57894 4.66557 4.84546 4.92612 4.99196 5.00888 5.09973 5.16670 5.38275 5.46859 5.54088 6.07286 6.42443 7.02161 7.13054 7.36275 7.94024 8.65810 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.017883 B = 0.003108 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.392345 B = 9006.616838 C = 9563.954533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.259 3.741 3 C 0.224 3.776 4 N -0.453 5.453 5 C -0.334 4.334 6 H 0.081 0.919 7 C 0.003 3.997 8 N -0.900 5.900 9 Si 0.988 3.012 10 H -0.286 1.286 11 H -0.279 1.279 12 H -0.258 1.258 13 C 0.480 3.520 14 O -0.613 6.613 15 C -0.174 4.174 16 H 0.123 0.877 17 C -0.107 4.107 18 C -0.105 4.105 19 H 0.105 0.895 20 C -0.043 4.043 21 C -0.090 4.090 22 C -0.094 4.094 23 C -0.037 4.037 24 Cl -0.056 7.056 25 C -0.107 4.107 26 C -0.038 4.038 27 Cl -0.069 7.069 28 H 0.128 0.872 29 H 0.137 0.863 30 H 0.273 0.727 31 H 0.106 0.894 32 H 0.151 0.849 33 H 0.177 0.823 34 H 0.170 0.830 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.100 17.219 -9.005 19.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.058 4.058 3 C 0.098 3.902 4 N -0.172 5.172 5 C -0.462 4.462 6 H 0.099 0.901 7 C -0.198 4.198 8 N -0.539 5.539 9 Si 0.812 3.188 10 H -0.212 1.212 11 H -0.204 1.204 12 H -0.183 1.183 13 C 0.270 3.730 14 O -0.499 6.499 15 C -0.195 4.195 16 H 0.141 0.859 17 C -0.144 4.144 18 C -0.124 4.124 19 H 0.123 0.877 20 C -0.044 4.044 21 C -0.108 4.108 22 C -0.113 4.113 23 C -0.064 4.064 24 Cl -0.027 7.027 25 C -0.126 4.126 26 C -0.065 4.065 27 Cl -0.040 7.040 28 H 0.146 0.854 29 H 0.154 0.846 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.169 0.831 33 H 0.194 0.806 34 H 0.188 0.812 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.564 17.183 -8.414 19.140 hybrid contribution 0.090 -1.186 1.370 1.814 sum -0.475 15.997 -7.044 17.485 Atomic orbital electron populations 1.80912 1.14837 1.13516 1.10040 1.29863 0.95894 0.89029 0.91020 1.19107 0.79826 1.06135 0.85164 1.43634 1.56358 1.04875 1.12340 1.19613 1.25848 0.86634 1.14069 0.90070 1.25926 0.95085 1.01071 0.97709 1.69824 1.23864 1.24546 1.35694 0.85058 0.79015 0.76919 0.77771 1.21205 1.20420 1.18269 1.20074 0.81813 0.84179 0.86922 1.90517 1.52211 1.85121 1.22031 1.22232 1.04746 0.89092 1.03414 0.85869 1.23353 0.94479 0.97011 0.99577 1.20967 0.99398 0.91689 1.00342 0.87661 1.19232 0.95420 0.96231 0.93524 1.21359 0.98174 0.96763 0.94505 1.21476 0.93643 0.95488 1.00676 1.20872 0.95164 0.96648 0.93665 1.98383 1.54178 1.57699 1.92425 1.20963 0.97995 0.97519 0.96131 1.20807 0.99535 1.00210 0.85954 1.98401 1.96647 1.92295 1.16684 0.85402 0.84583 0.91655 0.87569 0.83111 0.80628 0.81250 0.83277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.87 18.54 20.01 0.37 -23.50 16 2 C 0.26 11.02 12.64 89.44 1.13 12.15 16 3 C 0.22 8.33 4.80 84.57 0.41 8.73 16 4 N -0.45 -20.64 2.61 -645.40 -1.68 -22.32 16 5 C -0.33 -17.19 9.28 84.04 0.78 -16.41 16 6 H 0.08 4.48 7.42 -2.91 -0.02 4.46 16 7 C 0.00 0.16 5.09 84.93 0.43 0.60 16 8 N -0.90 -44.49 9.18 21.66 0.20 -44.29 16 9 Si 0.99 40.31 29.56 68.60 2.03 42.34 16 10 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 12 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 13 C 0.48 21.28 7.32 87.66 0.64 21.92 16 14 O -0.61 -32.41 15.96 -3.07 -0.05 -32.46 16 15 C -0.17 -5.50 4.45 -11.54 -0.05 -5.55 16 16 H 0.12 3.67 6.62 -2.39 -0.02 3.66 16 17 C -0.11 -2.33 9.56 30.61 0.29 -2.04 16 18 C -0.11 -3.02 5.06 -11.53 -0.06 -3.08 16 19 H 0.11 3.67 6.69 -2.39 -0.02 3.65 16 20 C -0.04 -1.06 5.61 -19.84 -0.11 -1.17 16 21 C -0.09 -1.56 9.30 22.26 0.21 -1.36 16 22 C -0.09 -1.50 9.83 22.29 0.22 -1.28 16 23 C -0.04 -0.70 6.32 22.32 0.14 -0.56 16 24 Cl -0.06 -0.96 28.96 -2.72 -0.08 -1.04 16 25 C -0.11 -2.38 9.62 22.31 0.21 -2.16 16 26 C -0.04 -1.01 6.31 22.32 0.14 -0.86 16 27 Cl -0.07 -2.09 27.42 -2.72 -0.07 -2.17 16 28 H 0.13 4.95 6.38 -2.39 -0.02 4.93 16 29 H 0.14 3.50 7.10 -2.39 -0.02 3.48 16 30 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 31 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.15 1.80 6.17 -2.39 -0.01 1.79 16 33 H 0.18 1.85 6.01 -2.91 -0.02 1.83 16 34 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -68.67 337.71 6.27 -62.41 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.17 Total: 12.10 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 4.39 Total: 8.93 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -1.11 Total: -90.11 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.05 Total: -32.46 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 17 Polarization: -3.05 SS G_CDS: -0.15 Total: -3.20 kcal Total: -68.67 6.27 -62.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089768368.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.880 kcal (2) G-P(sol) polarization free energy of solvation -68.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds