Wall clock time and date at job start Tue Mar 31 2020 05:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46929 * 0.50662 * 3 2 1 5 5 C 1.37102 * 119.99913 * 97.91100 * 4 3 2 6 6 H 1.08003 * 119.99768 * 156.62280 * 5 4 3 7 7 C 1.38952 * 119.99875 * 336.62464 * 5 4 3 8 8 N 1.31411 * 119.99823 * 349.73341 * 7 5 4 9 9 Si 1.86795 * 119.99645 * 169.73582 * 7 5 4 10 10 H 1.48498 * 109.47198 * 90.00193 * 9 7 5 11 11 H 1.48506 * 109.47075 * 210.00043 * 9 7 5 12 12 H 1.48498 * 109.47597 * 329.99895 * 9 7 5 13 13 C 1.34773 * 120.00118 * 277.90824 * 4 3 2 14 14 O 1.21294 * 120.00192 * 180.02562 * 13 4 3 15 15 C 1.50708 * 119.99912 * 0.02562 * 13 4 3 16 16 H 1.08997 * 115.54697 * 34.42074 * 15 13 4 17 17 C 1.52998 * 117.50121 * 248.74694 * 15 13 4 18 18 C 1.52996 * 117.49623 * 180.08665 * 15 13 4 19 19 H 1.09000 * 117.50102 * 215.00539 * 18 15 13 20 20 C 1.50699 * 117.50319 * 0.02562 * 18 15 13 21 21 C 1.38247 * 119.99220 * 60.00101 * 20 18 15 22 22 C 1.38197 * 120.02626 * 179.97438 * 21 20 18 23 23 C 1.38383 * 120.01443 * 359.97438 * 22 21 20 24 24 Cl 1.73600 * 120.00626 * 179.97438 * 23 22 21 25 25 C 1.38310 * 119.98473 * 0.02562 * 23 22 21 26 26 C 1.38335 * 119.99824 * 239.72584 * 20 18 15 27 27 Cl 1.73607 * 120.00342 * 0.02562 * 26 20 18 28 28 H 1.08999 * 109.46798 * 240.51020 * 3 2 1 29 29 H 1.08996 * 109.46985 * 120.50754 * 3 2 1 30 30 H 0.97000 * 119.99852 * 179.97438 * 8 7 5 31 31 H 1.09004 * 117.49839 * 0.02562 * 17 15 13 32 32 H 1.08992 * 117.50202 * 145.02052 * 17 15 13 33 33 H 1.07998 * 119.98344 * 359.97438 * 21 20 18 34 34 H 1.08003 * 119.99065 * 180.02562 * 22 21 20 35 35 H 1.07996 * 120.00992 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3803 -0.0122 5 6 3.4798 -1.9616 -1.1934 6 1 4.1695 -2.7926 -1.1877 7 6 2.9804 -1.4814 -2.3979 8 7 1.9950 -0.6119 -2.4007 9 14 3.7097 -2.0718 -4.0131 10 1 2.9769 -3.2778 -4.4756 11 1 3.5895 -0.9984 -5.0323 12 1 5.1424 -2.4087 -3.8156 13 6 3.1705 -2.0794 1.1377 14 8 3.5757 -3.2226 1.1277 15 6 2.7492 -1.4406 2.4361 16 1 1.9168 -0.7403 2.3671 17 6 3.8428 -1.1392 3.4627 18 6 2.8582 -2.2854 3.7070 19 1 2.0975 -2.1409 4.4742 20 6 3.3791 -3.6924 3.5648 21 6 4.6451 -3.9123 3.0550 22 6 5.1237 -5.2022 2.9248 23 6 4.3361 -6.2745 3.3053 24 17 4.9372 -7.8948 3.1411 25 6 3.0693 -6.0551 3.8154 26 6 2.5926 -4.7633 3.9498 27 17 1.0052 -4.4866 4.5960 28 1 2.9711 0.5067 0.8945 29 1 2.9711 0.5225 -0.8854 30 1 1.6466 -0.2764 -3.2415 31 1 4.8672 -1.4025 3.1989 32 1 3.7298 -0.2408 4.0694 33 1 5.2604 -3.0758 2.7584 34 1 6.1131 -5.3734 2.5269 35 1 2.4544 -6.8916 4.1128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089768369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:23 Heat of formation + Delta-G solvation = 52.382656 kcal Electronic energy + Delta-G solvation = -24311.806073 eV Core-core repulsion = 20556.512727 eV Total energy + Delta-G solvation = -3755.293347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.033 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.15031 -38.60930 -36.79374 -36.42209 -35.86076 -35.43554 -34.28401 -31.89001 -30.61929 -30.18588 -27.55343 -25.62072 -23.90731 -23.05394 -22.45841 -20.53193 -18.86951 -17.93728 -17.52685 -16.69977 -16.25682 -15.64535 -15.20584 -14.78186 -14.45774 -14.21860 -13.82635 -13.68986 -13.65809 -13.26233 -13.04288 -12.57255 -12.22006 -12.08926 -11.95944 -11.84934 -11.57644 -11.36749 -11.31435 -11.20555 -11.02808 -10.74299 -10.64295 -10.61208 -10.57215 -10.42480 -10.29017 -10.09377 -9.30623 -8.98231 -8.44299 -8.06723 -7.81027 -6.52892 -4.11472 1.25496 1.46088 2.03529 2.50937 3.02985 3.17791 3.21365 3.28089 3.64630 3.80147 3.96399 4.06020 4.20887 4.55853 4.76057 4.88735 4.92582 5.07946 5.14729 5.21192 5.24853 5.38213 5.49770 5.66804 5.72593 5.84327 5.96523 6.00586 6.09913 6.17518 6.24076 6.43263 6.55802 6.66940 6.87051 7.39629 7.86365 8.21961 8.70823 8.93743 9.12560 9.67268 10.52126 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.004392 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.566126 B = 6373.691286 C = 7823.648191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.247 3.753 3 C 0.222 3.778 4 N -0.436 5.436 5 C -0.306 4.306 6 H 0.106 0.894 7 C 0.032 3.968 8 N -0.886 5.886 9 Si 0.931 3.069 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.480 3.520 14 O -0.555 6.555 15 C -0.161 4.161 16 H 0.116 0.884 17 C -0.151 4.151 18 C -0.099 4.099 19 H 0.121 0.879 20 C -0.016 4.016 21 C -0.016 4.016 22 C -0.114 4.114 23 C -0.024 4.024 24 Cl -0.078 7.078 25 C -0.117 4.117 26 C -0.018 4.018 27 Cl -0.071 7.071 28 H 0.081 0.919 29 H 0.133 0.867 30 H 0.274 0.726 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.659 -1.951 12.472 14.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.072 4.072 3 C 0.094 3.906 4 N -0.156 5.156 5 C -0.433 4.433 6 H 0.124 0.876 7 C -0.172 4.172 8 N -0.525 5.525 9 Si 0.758 3.242 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.269 3.731 14 O -0.437 6.437 15 C -0.183 4.183 16 H 0.134 0.866 17 C -0.188 4.188 18 C -0.117 4.117 19 H 0.138 0.862 20 C -0.017 4.017 21 C -0.035 4.035 22 C -0.133 4.133 23 C -0.051 4.051 24 Cl -0.049 7.049 25 C -0.137 4.137 26 C -0.045 4.045 27 Cl -0.042 7.042 28 H 0.099 0.901 29 H 0.151 0.849 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.998 -2.536 12.309 13.525 hybrid contribution 0.173 -0.286 -1.237 1.282 sum 5.172 -2.823 11.072 12.542 Atomic orbital electron populations 1.80913 1.13670 1.08540 1.12439 1.29367 0.95430 0.92416 0.89953 1.18798 0.81389 0.86709 1.03695 1.43539 1.55807 1.09628 1.06597 1.19695 1.25081 1.17033 0.81468 0.87604 1.25348 0.95024 0.96788 0.99991 1.69741 1.23454 1.31154 1.28168 0.85833 0.79439 0.78357 0.80567 1.20388 1.20755 1.19273 1.19252 0.83733 0.86090 0.84058 1.90581 1.50400 1.17328 1.85415 1.22425 1.02367 1.03008 0.90490 0.86581 1.23130 0.95695 0.98991 1.01029 1.21023 1.02487 0.88673 0.99522 0.86155 1.18736 0.93391 0.92440 0.97116 1.20647 0.94010 0.96329 0.92479 1.20909 1.00310 0.91233 1.00811 1.20562 0.94754 0.85538 1.04206 1.98345 1.87917 1.22046 1.96595 1.20577 0.94917 0.95704 1.02481 1.20351 0.87195 0.93614 1.03359 1.98342 1.24517 1.96578 1.84797 0.90095 0.84942 0.91559 0.87823 0.87620 0.84844 0.85069 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.13 18.54 42.15 0.78 -10.34 16 2 C 0.25 5.29 12.64 -20.76 -0.26 5.03 16 3 C 0.22 4.19 4.80 -6.82 -0.03 4.15 16 4 N -0.44 -9.54 2.61 -117.93 -0.31 -9.85 16 5 C -0.31 -7.46 9.28 -14.93 -0.14 -7.60 16 6 H 0.11 2.70 7.42 -52.48 -0.39 2.31 16 7 C 0.03 0.75 5.09 -17.47 -0.09 0.66 16 8 N -0.89 -21.73 9.18 55.50 0.51 -21.22 16 9 Si 0.93 19.39 29.56 -169.99 -5.03 14.36 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 11 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 12 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 13 C 0.48 9.90 7.18 -10.98 -0.08 9.82 16 14 O -0.55 -12.63 11.41 5.55 0.06 -12.57 16 15 C -0.16 -2.59 4.80 -91.77 -0.44 -3.03 16 16 H 0.12 1.82 6.63 -51.93 -0.34 1.47 16 17 C -0.15 -1.82 9.58 -26.69 -0.26 -2.07 16 18 C -0.10 -1.42 5.56 -91.74 -0.51 -1.93 16 19 H 0.12 1.58 7.15 -51.93 -0.37 1.21 16 20 C -0.02 -0.25 4.37 -104.58 -0.46 -0.71 16 21 C -0.02 -0.25 6.17 -39.59 -0.24 -0.49 16 22 C -0.11 -1.69 9.83 -39.54 -0.39 -2.08 16 23 C -0.02 -0.35 6.32 -39.50 -0.25 -0.60 16 24 Cl -0.08 -1.03 28.96 -51.86 -1.50 -2.53 16 25 C -0.12 -1.75 9.62 -39.51 -0.38 -2.13 16 26 C -0.02 -0.29 6.31 -39.50 -0.25 -0.54 16 27 Cl -0.07 -1.03 27.41 -51.86 -1.42 -2.45 16 28 H 0.08 1.16 7.10 -51.93 -0.37 0.79 16 29 H 0.13 2.60 6.38 -51.93 -0.33 2.27 16 30 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 31 H 0.10 1.22 6.18 -51.93 -0.32 0.89 16 32 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.13 1.95 5.78 -52.49 -0.30 1.65 16 34 H 0.13 1.72 8.06 -52.48 -0.42 1.29 16 35 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -28.64 329.75 -8.54 -37.18 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -2.83 Total: 3.96 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -3.78 Total: -1.50 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.98 Total: -41.42 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.06 Total: -12.57 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -2.92 Total: -4.98 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.64 -8.54 -37.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089768369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.562 kcal (2) G-P(sol) polarization free energy of solvation -28.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds