Wall clock time and date at job start Tue Mar 31 2020 05:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99485 * 2 1 4 4 H 1.48494 * 109.47177 * 269.99875 * 3 2 1 5 5 H 1.48505 * 109.47036 * 30.00159 * 3 2 1 6 6 H 1.48499 * 109.46776 * 149.99648 * 3 2 1 7 7 C 1.38941 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00369 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.39679 * 120.00084 * 179.97438 * 13 12 10 15 15 C 1.38947 * 120.05684 * 0.02562 * 14 13 12 16 16 C 1.38088 * 119.91281 * 180.02562 * 15 14 13 17 17 C 1.38310 * 120.08453 * 359.97438 * 16 15 14 18 18 C 1.38203 * 120.19355 * 0.04019 * 17 16 15 19 19 C 1.38358 * 120.00572 * 359.68488 * 18 17 16 20 20 C 1.51172 * 108.28516 * 179.81569 * 19 18 17 21 21 N 1.48056 * 105.73730 * 342.91380 * 20 19 18 22 22 C 1.39009 * 110.99868 * 267.99767 * 21 20 19 23 23 C 1.39137 * 119.70092 * 174.59310 * 22 21 20 24 24 C 1.38305 * 119.08926 * 179.75516 * 23 22 21 25 25 C 1.38878 * 118.50749 * 0.50568 * 24 23 22 26 26 C 1.38020 * 119.33180 * 359.72965 * 25 24 23 27 27 N 1.31975 * 120.85536 * 0.02692 * 26 25 24 28 28 C 1.48056 * 103.87215 * 27.35101 * 21 20 19 29 29 H 0.96993 * 120.00255 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 34 34 H 1.07995 * 120.04625 * 0.03057 * 15 14 13 35 35 H 1.07997 * 119.95797 * 180.02562 * 16 15 14 36 36 H 1.08004 * 119.90658 * 180.02562 * 17 16 15 37 37 H 1.09009 * 110.37197 * 223.73689 * 20 19 18 38 38 H 1.09005 * 109.97776 * 101.87970 * 20 19 18 39 39 H 1.07998 * 120.45839 * 359.97438 * 23 22 21 40 40 H 1.08003 * 120.74309 * 180.22031 * 24 23 22 41 41 H 1.08004 * 120.33588 * 179.71033 * 25 24 23 42 42 H 1.08000 * 119.57453 * 179.97438 * 26 25 24 43 43 H 1.09000 * 110.20547 * 213.36493 * 28 21 20 44 44 H 1.08997 * 110.20680 * 91.46724 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4691 -2.1386 0.0005 9 7 3.3799 -1.2031 0.0011 10 6 4.0539 -2.3703 0.0011 11 8 3.4475 -3.4208 0.0011 12 6 5.5609 -2.3701 0.0022 13 7 6.0493 -3.7513 0.0026 14 6 7.4226 -4.0065 0.0031 15 6 8.3265 -2.9512 0.0038 16 6 9.6835 -3.2069 0.0038 17 6 10.1433 -4.5113 0.0036 18 6 9.2477 -5.5639 0.0026 19 6 7.8868 -5.3145 0.0084 20 6 7.1615 -6.6408 0.0011 21 7 8.1627 -7.6437 -0.4277 22 6 8.1304 -7.8222 -1.8059 23 6 9.0740 -8.6418 -2.4172 24 6 9.0269 -8.8144 -3.7886 25 6 8.0407 -8.1509 -4.5068 26 6 7.1396 -7.3491 -3.8360 27 7 7.2052 -7.2065 -2.5256 28 6 9.4546 -7.0617 0.0018 29 1 -0.4850 0.8400 -0.0004 30 1 3.8649 -0.3630 0.0007 31 1 5.9249 -1.8559 -0.8873 32 1 5.9236 -1.8566 0.8927 33 1 5.4191 -4.4887 0.0018 34 1 7.9683 -1.9324 0.0045 35 1 10.3868 -2.3872 0.0048 36 1 11.2053 -4.7080 0.0040 37 1 6.3295 -6.6145 -0.7028 38 1 6.8007 -6.8735 1.0031 39 1 9.8306 -9.1391 -1.8286 40 1 9.7440 -9.4474 -4.2903 41 1 7.9797 -8.2609 -5.5795 42 1 6.3713 -6.8309 -4.3906 43 1 10.2419 -7.3326 -0.7016 44 1 9.7086 -7.4072 1.0038 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089883847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:20 Heat of formation + Delta-G solvation = 66.646600 kcal Electronic energy + Delta-G solvation = -28054.380481 eV Core-core repulsion = 24165.388291 eV Total energy + Delta-G solvation = -3888.992190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.37360 -39.71158 -38.64404 -37.15670 -35.05257 -34.01819 -32.68754 -31.92707 -31.80151 -30.33927 -29.24212 -27.76773 -26.75204 -24.82466 -24.06449 -23.57945 -21.89451 -21.23191 -20.59332 -19.50124 -18.56703 -17.84021 -17.29179 -16.61904 -16.12387 -15.82763 -15.56649 -15.32828 -15.08346 -14.89688 -14.84321 -14.51363 -14.08386 -13.71473 -13.61332 -13.37514 -13.17092 -13.06629 -13.00129 -12.61128 -12.48299 -12.26746 -12.14574 -12.11330 -11.74591 -11.26736 -11.15590 -11.09740 -10.67039 -10.37964 -10.07213 -9.99049 -9.92834 -9.70073 -9.54456 -8.76283 -8.57099 -8.47878 -8.31434 -7.21072 -6.41210 -3.93858 0.94233 1.11528 1.37415 1.68642 2.96190 3.00841 3.09625 3.32343 3.55297 3.57870 3.73704 3.85457 4.01758 4.17120 4.46783 4.54825 4.58072 4.70140 4.89689 4.94322 5.00247 5.04433 5.12530 5.14418 5.28441 5.39007 5.48944 5.52138 5.56175 5.60663 5.68354 5.71052 5.74404 5.79797 5.88005 5.99569 6.08379 6.19638 6.30585 6.39891 6.52517 6.62977 6.89238 6.94726 7.38183 7.52783 7.86572 7.95889 8.06783 8.45105 8.81685 9.29095 9.63559 10.71203 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.002653 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.845328 B =10551.098296 C =11581.825014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.044 3.956 3 Si 0.880 3.120 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.309 4.309 8 H 0.121 0.879 9 N -0.579 5.579 10 C 0.440 3.560 11 O -0.574 6.574 12 C 0.110 3.890 13 N -0.721 5.721 14 C 0.255 3.745 15 C -0.201 4.201 16 C -0.069 4.069 17 C -0.165 4.165 18 C -0.087 4.087 19 C -0.190 4.190 20 C 0.085 3.915 21 N -0.449 5.449 22 C 0.305 3.695 23 C -0.186 4.186 24 C -0.057 4.057 25 C -0.202 4.202 26 C 0.127 3.873 27 N -0.505 5.505 28 C 0.087 3.913 29 H 0.275 0.725 30 H 0.373 0.627 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.413 0.587 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.156 0.844 43 H 0.085 0.915 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.895 -11.465 -4.484 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.160 4.160 3 Si 0.706 3.294 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.217 5.217 10 C 0.225 3.775 11 O -0.457 6.457 12 C -0.019 4.019 13 N -0.351 5.351 14 C 0.148 3.852 15 C -0.224 4.224 16 C -0.088 4.088 17 C -0.186 4.186 18 C -0.089 4.089 19 C -0.196 4.196 20 C -0.041 4.041 21 N -0.164 5.164 22 C 0.074 3.926 23 C -0.209 4.209 24 C -0.084 4.084 25 C -0.222 4.222 26 C -0.031 4.031 27 N -0.218 5.218 28 C -0.039 4.039 29 H 0.086 0.914 30 H 0.206 0.794 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.252 0.748 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.112 0.888 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.174 0.826 43 H 0.104 0.896 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 22.445 -11.859 -3.767 25.664 hybrid contribution 0.970 1.407 -0.783 1.880 sum 23.415 -10.452 -4.550 26.042 Atomic orbital electron populations 1.69616 1.05699 1.27768 1.48326 1.25062 0.95528 0.98118 0.97249 0.86666 0.79847 0.83854 0.79047 1.19441 1.19987 1.19343 1.19440 0.78983 0.96795 1.48563 0.86125 1.42126 1.07689 1.06043 1.65816 1.19626 0.88068 0.84861 0.84895 1.90557 1.69138 1.30924 1.55110 1.20973 0.94254 0.84705 1.01943 1.44497 1.03195 1.07488 1.79907 1.17220 0.83973 0.91431 0.92530 1.20642 0.92871 0.97766 1.11143 1.20751 0.94732 0.96087 0.97252 1.20065 0.98368 0.91445 1.08716 1.20658 0.93699 0.95220 0.99339 1.20187 0.95014 0.93411 1.10969 1.21490 0.95484 0.84782 1.02379 1.62310 1.05824 1.40561 1.07704 1.20089 0.91005 0.91911 0.89611 1.21524 1.01342 1.02548 0.95437 1.21424 0.96872 0.96547 0.93508 1.22022 0.97840 1.00963 1.01420 1.22639 0.96692 0.94314 0.89415 1.67641 1.24171 1.21802 1.08182 1.21821 0.90227 0.89142 1.02733 0.91399 0.79392 0.90621 0.90544 0.74804 0.85783 0.86093 0.86821 0.87311 0.88829 0.84709 0.84814 0.84914 0.82635 0.89650 0.87541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.09 13.96 55.50 0.77 -24.31 16 2 C 0.04 1.19 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 18.84 27.74 -169.99 -4.71 14.12 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 7 C -0.31 -8.57 10.16 -14.94 -0.15 -8.72 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.58 -13.41 5.09 -10.96 -0.06 -13.46 16 10 C 0.44 9.73 7.85 -10.98 -0.09 9.65 16 11 O -0.57 -14.96 15.24 5.55 0.08 -14.87 16 12 C 0.11 1.82 5.39 -5.19 -0.03 1.80 16 13 N -0.72 -11.96 5.70 -59.83 -0.34 -12.31 16 14 C 0.26 3.84 6.65 -83.81 -0.56 3.28 16 15 C -0.20 -2.67 9.31 -39.37 -0.37 -3.04 16 16 C -0.07 -0.80 10.04 -39.61 -0.40 -1.20 16 17 C -0.17 -1.88 10.04 -39.57 -0.40 -2.28 16 18 C -0.09 -1.08 6.18 -104.35 -0.64 -1.72 16 19 C -0.19 -2.69 6.12 -104.14 -0.64 -3.33 16 20 C 0.09 1.18 5.97 -4.11 -0.02 1.15 16 21 N -0.45 -5.49 5.54 -173.45 -0.96 -6.45 16 22 C 0.31 3.83 6.19 -155.02 -0.96 2.87 16 23 C -0.19 -1.83 8.88 -39.22 -0.35 -2.18 16 24 C -0.06 -0.48 10.17 -39.32 -0.40 -0.88 16 25 C -0.20 -1.80 10.10 -39.42 -0.40 -2.20 16 26 C 0.13 1.44 11.17 -17.57 -0.20 1.25 16 27 N -0.51 -7.00 8.14 -12.44 -0.10 -7.10 16 28 C 0.09 0.89 6.47 -4.10 -0.03 0.86 16 29 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.37 7.50 5.76 -40.82 -0.24 7.27 16 31 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 32 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 33 H 0.41 7.52 7.10 -40.82 -0.29 7.23 16 34 H 0.12 1.49 6.73 -52.49 -0.35 1.14 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.11 1.03 8.06 -52.48 -0.42 0.60 16 37 H 0.11 1.70 6.47 -51.92 -0.34 1.36 16 38 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.14 1.03 7.70 -52.49 -0.40 0.63 16 40 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 41 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 42 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.09 0.74 6.67 -51.93 -0.35 0.40 16 44 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -33.10 366.94 -10.81 -43.91 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -5.31 Total: 18.55 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -5.72 Total: -3.60 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: -0.69 Total: -63.63 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.08 Total: -14.87 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.71 Total: 14.12 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.10 -10.81 -43.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089883847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.553 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds