Wall clock time and date at job start Tue Mar 31 2020 04:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.49027 * 2 1 4 4 C 1.53238 * 109.51360 * 239.93748 * 2 1 3 5 5 N 1.47146 * 108.67147 * 186.30232 * 4 2 1 6 6 C 1.34775 * 120.92664 * 231.07955 * 5 4 2 7 7 O 1.21592 * 120.00000 * 174.71862 * 6 5 4 8 8 N 1.34773 * 120.00079 * 354.71655 * 6 5 4 9 9 C 1.46495 * 120.00166 * 184.96187 * 8 6 5 10 10 C 1.52998 * 109.47349 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47502 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47145 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00142 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99594 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99904 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00285 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47266 * 89.99864 * 16 14 12 18 18 H 1.48498 * 109.47438 * 210.00442 * 16 14 12 19 19 H 1.48506 * 109.46973 * 330.00098 * 16 14 12 20 20 C 1.47083 * 118.19047 * 50.84260 * 5 4 2 21 21 C 1.53232 * 108.68346 * 309.15281 * 20 5 4 22 22 N 1.46890 * 109.49423 * 120.05457 * 2 1 3 23 23 C 1.46898 * 111.00336 * 307.23953 * 22 2 1 24 24 C 1.53006 * 109.47297 * 158.97591 * 23 22 2 25 25 F 1.39904 * 109.46666 * 66.28963 * 24 23 22 26 26 F 1.39894 * 109.47130 * 186.28884 * 24 23 22 27 27 F 1.39900 * 109.47249 * 306.29255 * 24 23 22 28 28 H 1.08998 * 109.46796 * 306.73573 * 1 2 3 29 29 H 1.08996 * 109.46914 * 66.73491 * 1 2 3 30 30 H 1.09001 * 109.46553 * 186.73270 * 1 2 3 31 31 H 1.09000 * 109.62883 * 305.90748 * 4 2 1 32 32 H 1.08999 * 109.62814 * 66.48522 * 4 2 1 33 33 H 0.97002 * 119.99780 * 4.96204 * 8 6 5 34 34 H 1.09003 * 109.47187 * 300.00292 * 9 8 6 35 35 H 1.09000 * 109.47400 * 60.00143 * 9 8 6 36 36 H 1.09003 * 109.47117 * 300.00216 * 10 9 8 37 37 H 1.09007 * 109.47431 * 60.00046 * 10 9 8 38 38 H 1.08995 * 109.47112 * 300.00106 * 11 10 9 39 39 H 1.08997 * 109.46754 * 59.99749 * 11 10 9 40 40 H 0.97000 * 120.00514 * 180.02562 * 15 14 12 41 41 H 1.09004 * 109.62834 * 189.34077 * 20 5 4 42 42 H 1.09000 * 109.62602 * 68.96187 * 20 5 4 43 43 H 1.08999 * 109.49403 * 173.69629 * 21 20 5 44 44 H 1.09006 * 109.49361 * 293.74461 * 21 20 5 45 45 H 1.08993 * 109.47435 * 278.98062 * 23 22 2 46 46 H 1.09004 * 109.46858 * 38.98145 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0419 -0.7235 -1.2501 5 7 3.5053 -0.8466 -1.1571 6 6 4.2992 -0.4556 -2.1736 7 8 5.5079 -0.4747 -2.0430 8 7 3.7534 -0.0436 -3.3350 9 6 4.6144 0.2776 -4.4758 10 6 3.7501 0.7166 -5.6595 11 6 4.6494 1.0527 -6.8508 12 6 3.7981 1.4858 -8.0164 13 1 2.7232 1.5177 -7.9176 14 6 4.3916 1.8402 -9.2094 15 7 3.6487 2.2186 -10.2266 16 14 6.2509 1.7842 -9.3806 17 1 6.6636 0.4409 -9.8605 18 1 6.6894 2.8146 -10.3559 19 1 6.8777 2.0528 -8.0614 20 6 4.0788 -1.4030 0.0777 21 6 3.4867 -0.6527 1.2754 22 7 2.0203 -0.6935 1.1985 23 6 1.4137 -0.1358 2.4146 24 6 1.5094 -1.1593 3.5479 25 9 2.8523 -1.3520 3.8898 26 9 0.8074 -0.6880 4.6624 27 9 0.9563 -2.3736 3.1276 28 1 -0.3633 0.6147 0.8236 29 1 -0.3633 0.4059 -0.9441 30 1 -0.3632 -1.0206 0.1205 31 1 1.5967 -1.7169 -1.3063 32 1 1.7781 -0.1502 -2.1388 33 1 2.7904 0.0403 -3.4154 34 1 5.2933 1.0854 -4.2026 35 1 5.1921 -0.6038 -4.7545 36 1 3.0710 -0.0909 -5.9328 37 1 3.1728 1.5982 -5.3806 38 1 5.3282 1.8604 -6.5772 39 1 5.2271 0.1715 -7.1298 40 1 4.0662 2.4677 -11.0660 41 1 5.1617 -1.2790 0.0668 42 1 3.8323 -2.4622 0.1509 43 1 3.8157 -1.1265 2.2003 44 1 3.8235 0.3838 1.2580 45 1 1.9426 0.7734 2.7004 46 1 0.3662 0.0980 2.2238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089939187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:06 Heat of formation + Delta-G solvation = -172.337089 kcal Electronic energy + Delta-G solvation = -29881.303760 eV Core-core repulsion = 25198.208710 eV Total energy + Delta-G solvation = -4683.095050 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.172 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.47870 -48.06060 -47.88149 -40.68774 -38.91573 -35.72043 -35.11227 -33.52692 -32.98294 -31.54043 -30.37401 -27.91653 -27.15824 -26.21389 -23.58242 -23.33944 -22.38393 -21.10797 -20.54883 -19.57471 -18.95139 -18.85296 -18.17336 -17.93444 -16.82560 -16.38370 -16.22432 -15.85070 -15.46214 -15.06408 -14.86193 -14.73791 -14.64177 -14.55007 -14.38633 -14.28550 -14.10314 -14.02687 -13.86247 -13.58333 -13.40818 -12.73273 -12.65754 -12.55122 -12.34277 -12.26352 -12.01093 -11.90396 -11.71943 -11.48420 -11.37255 -11.05713 -10.90579 -10.27245 -10.02958 -9.83976 -9.69572 -9.31445 -9.24430 -9.00935 -8.58823 -8.56524 -6.07753 -4.06489 2.22579 2.50581 2.94757 3.20171 3.30596 3.38209 3.38876 3.42605 3.56270 3.81375 3.95570 4.19820 4.37660 4.39693 4.43360 4.57825 4.65844 4.76156 4.84409 4.97196 5.05802 5.16569 5.24001 5.26430 5.41753 5.45358 5.52461 5.60971 5.66517 5.71439 6.00909 6.08859 6.15871 6.31317 6.36642 6.44277 6.65888 6.79399 6.89213 7.21532 7.35001 7.74026 7.94070 8.48380 8.60187 8.95862 9.54535 11.05394 Molecular weight = 337.17amu Principal moments of inertia in cm(-1) A = 0.029686 B = 0.001947 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.987773 B =14379.785698 C =15021.673956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.071 3.929 3 H 0.055 0.945 4 C 0.122 3.878 5 N -0.637 5.637 6 C 0.706 3.294 7 O -0.590 6.590 8 N -0.741 5.741 9 C 0.132 3.868 10 C -0.112 4.112 11 C -0.011 4.011 12 C -0.522 4.522 13 H 0.072 0.928 14 C 0.066 3.934 15 N -0.903 5.903 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.264 1.264 20 C 0.137 3.863 21 C 0.022 3.978 22 N -0.527 5.527 23 C 0.000 4.000 24 C 0.459 3.541 25 F -0.183 7.183 26 F -0.185 7.185 27 F -0.171 7.171 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.394 0.606 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.019 0.981 39 H 0.015 0.985 40 H 0.263 0.737 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.047 0.953 45 H 0.084 0.916 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.126 -6.281 30.222 31.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.038 4.038 3 H 0.073 0.927 4 C -0.002 4.002 5 N -0.375 5.375 6 C 0.407 3.593 7 O -0.468 6.468 8 N -0.397 5.397 9 C 0.008 3.992 10 C -0.150 4.150 11 C -0.049 4.049 12 C -0.560 4.560 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.542 5.542 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.189 1.189 20 C 0.014 3.986 21 C -0.106 4.106 22 N -0.252 5.252 23 C -0.130 4.130 24 C 0.404 3.596 25 F -0.165 7.165 26 F -0.167 7.167 27 F -0.153 7.153 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.229 0.771 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.121 0.879 44 H 0.066 0.934 45 H 0.102 0.898 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.318 -6.750 30.049 31.656 hybrid contribution 0.629 0.759 0.015 0.986 sum -6.689 -5.992 30.064 31.376 Atomic orbital electron populations 1.21990 0.92931 1.03477 1.02860 1.22056 0.96090 0.96194 0.89440 0.92656 1.21754 0.80345 1.01459 0.96606 1.47341 1.05783 1.67666 1.16750 1.15884 0.85094 0.78036 0.80253 1.90910 1.12360 1.61544 1.82022 1.45496 1.10491 1.71895 1.11854 1.21535 0.93130 1.00375 0.84120 1.21705 0.98710 1.00634 0.93999 1.19500 0.95696 0.96433 0.93258 1.21087 0.94950 1.44890 0.95050 0.91024 1.25033 0.98192 0.94552 0.95745 1.69909 1.35524 1.45692 1.03055 0.86774 0.86175 0.78021 0.78323 1.20230 1.21382 1.18878 1.21479 0.99539 0.96974 0.80636 1.22987 0.85928 1.00787 1.00869 1.61788 1.07560 1.55245 1.00595 1.23369 1.05532 0.94430 0.89679 1.20494 0.73437 0.82554 0.83145 1.93111 1.34534 1.95765 1.93067 1.93191 1.79213 1.88397 1.55880 1.93212 1.85234 1.47022 1.89799 0.92023 0.90724 0.90731 0.90137 0.89518 0.77065 0.91905 0.91958 0.92153 0.92195 0.96282 0.96696 0.92694 0.88108 0.90839 0.87902 0.93442 0.89825 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 8.58 37.16 0.32 -0.33 16 2 C 0.07 0.44 2.61 -67.59 -0.18 0.26 16 3 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 4 C 0.12 0.93 5.82 -3.57 -0.02 0.91 16 5 N -0.64 -6.90 3.02 -178.14 -0.54 -7.43 16 6 C 0.71 10.38 8.31 -86.92 -0.72 9.65 16 7 O -0.59 -11.05 15.80 5.29 0.08 -10.96 16 8 N -0.74 -10.20 5.47 -65.23 -0.36 -10.56 16 9 C 0.13 2.17 5.68 -4.05 -0.02 2.15 16 10 C -0.11 -2.05 5.27 -26.73 -0.14 -2.20 16 11 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 12 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 13 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 14 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 15 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 16 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 20 C 0.14 1.32 6.60 -3.60 -0.02 1.29 16 21 C 0.02 0.17 5.40 -3.70 -0.02 0.15 16 22 N -0.53 -3.48 4.21 -226.35 -0.95 -4.43 16 23 C 0.00 0.00 4.94 -3.82 -0.02 -0.02 16 24 C 0.46 3.11 3.27 37.16 0.12 3.23 16 25 F -0.18 -1.42 14.67 2.25 0.03 -1.38 16 26 F -0.19 -1.33 17.32 2.25 0.04 -1.29 16 27 F -0.17 -1.43 17.12 2.25 0.04 -1.39 16 28 H 0.06 0.20 6.30 -51.93 -0.33 -0.13 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.58 5.75 -51.93 -0.30 0.29 16 33 H 0.39 4.34 6.02 -40.82 -0.25 4.09 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 39 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 41 H 0.10 1.12 7.04 -51.93 -0.37 0.75 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.73 5.43 -51.93 -0.28 0.45 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.35 7.98 -51.93 -0.41 -0.07 16 46 H 0.13 0.44 5.32 -51.93 -0.28 0.17 16 LS Contribution 371.77 15.07 5.60 5.60 Total: -1.00 -33.61 371.77 -7.99 -41.59 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.79 Total: -1.62 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -1.25 Total: 1.68 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -1.07 Total: -49.19 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.11 Total: -4.06 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.61 -7.99 -41.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089939187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.743 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds