Wall clock time and date at job start Tue Mar 31 2020 07:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21291 * 120.00178 * 2 1 4 4 C 1.46866 * 120.00068 * 180.02562 * 2 1 3 5 5 C 1.40039 * 120.11248 * 180.02562 * 4 2 1 6 6 C 1.37112 * 119.88536 * 179.97438 * 5 4 2 7 7 C 1.39095 * 120.11669 * 0.02562 * 6 5 4 8 8 O 1.35649 * 119.89155 * 179.97438 * 7 6 5 9 9 C 1.35707 * 118.00287 * 185.72814 * 8 7 6 10 10 C 1.39028 * 119.90879 * 79.29278 * 9 8 7 11 11 C 1.37679 * 120.08912 * 180.25591 * 10 9 8 12 12 C 1.39797 * 119.91224 * 359.49749 * 11 10 9 13 13 C 1.47493 * 120.09607 * 180.27705 * 12 11 10 14 14 O 1.21626 * 119.99997 * 318.98932 * 13 12 11 15 15 N 1.34773 * 120.00538 * 138.99150 * 13 12 11 16 16 C 1.46497 * 119.99955 * 7.76512 * 15 13 12 17 17 C 1.36898 * 120.00372 * 187.77046 * 15 13 12 18 18 H 1.08002 * 119.99878 * 317.88698 * 17 15 13 19 19 C 1.39026 * 119.99939 * 137.88717 * 17 15 13 20 20 N 1.31377 * 119.99994 * 44.03487 * 19 17 15 21 21 Si 1.86805 * 119.99931 * 224.03187 * 19 17 15 22 22 H 1.48498 * 109.46780 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46829 * 120.00066 * 21 19 17 24 24 H 1.48501 * 109.47141 * 240.00119 * 21 19 17 25 25 C 1.39799 * 119.81521 * 0.25092 * 12 11 10 26 26 C 1.37689 * 119.90495 * 0.02562 * 25 12 11 27 27 C 1.39101 * 120.22370 * 0.25047 * 7 6 5 28 28 C 1.37120 * 120.11362 * 359.45395 * 27 7 6 29 29 H 1.08996 * 109.47065 * 239.99832 * 1 2 3 30 30 H 1.09000 * 109.47389 * 0.02562 * 1 2 3 31 31 H 1.09009 * 109.46962 * 120.00011 * 1 2 3 32 32 H 1.08003 * 120.05756 * 359.94244 * 5 4 2 33 33 H 1.08001 * 119.94240 * 179.97438 * 6 5 4 34 34 H 1.08003 * 119.95432 * 0.02596 * 10 9 8 35 35 H 1.08010 * 120.04766 * 179.77429 * 11 10 9 36 36 H 1.09005 * 109.47291 * 98.74957 * 16 15 13 37 37 H 1.08993 * 109.47824 * 218.75514 * 16 15 13 38 38 H 1.09001 * 109.46941 * 338.75642 * 16 15 13 39 39 H 0.97006 * 119.99927 * 179.97438 * 20 19 17 40 40 H 1.07998 * 120.05053 * 180.02562 * 25 12 11 41 41 H 1.08007 * 119.95246 * 179.97438 * 26 25 12 42 42 H 1.08002 * 119.94703 * 179.70926 * 27 7 6 43 43 H 1.07999 * 120.06099 * 180.27552 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2413 -1.2719 -0.0006 5 6 3.6417 -1.2746 0.0000 6 6 4.3226 -2.4647 0.0000 7 6 3.6248 -3.6680 -0.0011 8 8 4.3030 -4.8428 -0.0016 9 6 3.5891 -5.9906 -0.1223 10 6 3.1379 -6.3981 -1.3725 11 6 2.4088 -7.5592 -1.4985 12 6 2.1314 -8.3342 -0.3685 13 6 1.3560 -9.5820 -0.4996 14 8 0.3907 -9.6233 -1.2385 15 7 1.7169 -10.6764 0.1992 16 6 2.7695 -10.5834 1.2138 17 6 1.1000 -11.8750 -0.0391 18 1 0.0303 -11.9125 -0.1835 19 6 1.8504 -13.0440 -0.0954 20 7 2.7842 -13.2689 0.8010 21 14 1.5309 -14.2950 -1.4454 22 1 0.4358 -13.8081 -2.3223 23 1 2.7646 -14.4796 -2.2511 24 1 1.1388 -15.5913 -0.8364 25 6 2.5915 -7.9236 0.8861 26 6 3.3151 -6.7581 1.0041 27 6 2.2338 -3.6708 -0.0074 28 6 1.5435 -2.4861 -0.0014 29 1 -0.3633 -0.5138 0.8899 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8901 32 1 4.1845 -0.3409 -0.0001 33 1 5.4026 -2.4679 0.0000 34 1 3.3563 -5.8011 -2.2456 35 1 2.0554 -7.8733 -2.4696 36 1 2.3158 -10.4932 2.2009 37 1 3.3882 -11.4800 1.1789 38 1 3.3877 -9.7075 1.0168 39 1 3.3076 -14.0847 0.7620 40 1 2.3798 -8.5196 1.7615 41 1 3.6706 -6.4399 1.9731 42 1 1.6966 -4.6077 -0.0130 43 1 0.4635 -2.4892 -0.0018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090039989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:57 Heat of formation + Delta-G solvation = -20.161359 kcal Electronic energy + Delta-G solvation = -27624.930965 eV Core-core repulsion = 23602.163086 eV Total energy + Delta-G solvation = -4022.767879 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.18889 -39.94202 -39.18780 -37.84977 -36.75190 -34.83458 -32.36531 -32.10291 -31.12931 -30.91582 -30.29727 -29.04284 -26.47405 -25.21485 -24.09301 -23.27064 -22.62499 -22.13051 -20.21025 -19.66703 -18.92376 -17.38778 -17.15533 -16.62599 -16.54080 -16.00331 -15.39917 -15.26493 -15.01336 -14.84450 -14.42220 -14.41567 -14.18285 -14.01467 -13.89671 -13.66165 -13.37693 -13.17601 -13.08664 -12.58754 -12.52888 -12.36469 -12.23465 -12.07942 -11.77486 -11.63199 -11.39478 -11.20759 -10.96269 -10.73270 -10.44014 -10.29464 -10.06008 -9.45398 -8.91690 -8.82312 -8.69177 -8.59642 -8.36049 -7.80000 -6.77512 -3.99485 0.38286 0.92497 1.03873 1.42843 2.11672 2.88933 3.06469 3.22045 3.32129 3.46994 3.56136 3.79716 3.96315 4.16977 4.40365 4.51718 4.58544 4.73222 4.82964 4.86219 4.91599 4.96712 4.97919 5.05602 5.10141 5.24601 5.43642 5.45128 5.54134 5.59899 5.65029 5.71083 5.89332 5.97074 6.05024 6.07390 6.19940 6.32215 6.36813 6.40864 6.54080 6.65430 6.78270 7.07184 7.24309 7.40224 7.49450 8.15866 8.36840 8.99126 9.18593 9.84432 10.24658 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026402 B = 0.002129 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.260893 B =13146.538205 C =13608.918230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.400 3.600 3 O -0.468 6.468 4 C -0.218 4.218 5 C -0.023 4.023 6 C -0.164 4.164 7 C 0.164 3.836 8 O -0.250 6.250 9 C 0.064 3.936 10 C -0.132 4.132 11 C -0.068 4.068 12 C -0.082 4.082 13 C 0.478 3.522 14 O -0.579 6.579 15 N -0.428 5.428 16 C 0.039 3.961 17 C -0.347 4.347 18 H 0.099 0.901 19 C 0.075 3.925 20 N -0.820 5.820 21 Si 0.887 3.113 22 H -0.260 1.260 23 H -0.276 1.276 24 H -0.281 1.281 25 C -0.091 4.091 26 C -0.125 4.125 27 C -0.207 4.207 28 C -0.030 4.030 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.038 0.962 37 H 0.117 0.883 38 H 0.049 0.951 39 H 0.274 0.726 40 H 0.144 0.856 41 H 0.132 0.868 42 H 0.140 0.860 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.500 18.977 1.168 19.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.279 3.721 3 O -0.345 6.345 4 C -0.219 4.219 5 C -0.041 4.041 6 C -0.183 4.183 7 C 0.120 3.880 8 O -0.161 6.161 9 C 0.022 3.978 10 C -0.151 4.151 11 C -0.087 4.087 12 C -0.086 4.086 13 C 0.268 3.732 14 O -0.464 6.464 15 N -0.146 5.146 16 C -0.104 4.104 17 C -0.472 4.472 18 H 0.117 0.883 19 C -0.135 4.135 20 N -0.453 5.453 21 Si 0.710 3.290 22 H -0.184 1.184 23 H -0.202 1.202 24 H -0.207 1.207 25 C -0.110 4.110 26 C -0.143 4.143 27 C -0.226 4.226 28 C -0.048 4.048 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.056 0.944 37 H 0.135 0.865 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.162 0.838 41 H 0.150 0.850 42 H 0.158 0.842 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.693 19.273 0.947 19.484 hybrid contribution -0.040 -0.962 -0.431 1.054 sum 2.653 18.312 0.517 18.510 Atomic orbital electron populations 1.22260 0.93853 1.05096 1.04657 1.22350 0.91614 0.87492 0.70603 1.90536 1.72223 1.34374 1.37328 1.20404 0.94546 0.94732 1.12240 1.21065 0.93026 0.97814 0.92214 1.20296 1.00913 0.89164 1.07896 1.19670 0.90782 0.85548 0.92043 1.84322 1.34594 1.11052 1.86173 1.18691 0.98903 0.86562 0.93604 1.21240 0.99087 0.98223 0.96526 1.21054 0.95886 0.92803 0.98980 1.20548 0.98089 0.96323 0.93594 1.17945 0.87571 0.83697 0.84035 1.90639 1.29061 1.84160 1.42573 1.43365 1.32961 1.08002 1.30255 1.22994 0.92479 1.04383 0.90505 1.19137 0.93852 0.82661 1.51558 0.88339 1.25549 0.94449 0.98336 0.95195 1.70016 1.22330 1.25747 1.27163 0.86582 0.79464 0.79463 0.83441 1.18422 1.20155 1.20728 1.21601 0.96198 0.95165 0.98046 1.21131 0.99487 0.95938 0.97739 1.21300 0.93066 1.00102 1.08122 1.21140 1.00186 0.90675 0.92780 0.88781 0.89776 0.88768 0.84268 0.84368 0.85229 0.84556 0.94382 0.86501 0.93219 0.91514 0.83845 0.85036 0.84245 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.19 8.92 36.01 0.32 -0.86 16 2 C 0.40 3.77 7.22 -30.82 -0.22 3.55 16 3 O -0.47 -5.90 17.07 5.55 0.09 -5.81 16 4 C -0.22 -2.09 5.87 -105.06 -0.62 -2.71 16 5 C -0.02 -0.22 9.57 -39.32 -0.38 -0.60 16 6 C -0.16 -1.64 9.95 -39.67 -0.39 -2.03 16 7 C 0.16 1.87 6.63 -38.94 -0.26 1.61 16 8 O -0.25 -3.20 9.95 -2.24 -0.02 -3.22 16 9 C 0.06 0.87 4.17 -39.00 -0.16 0.71 16 10 C -0.13 -1.81 9.37 -39.49 -0.37 -2.18 16 11 C -0.07 -1.11 9.64 -39.20 -0.38 -1.49 16 12 C -0.08 -1.53 5.30 -104.96 -0.56 -2.08 16 13 C 0.48 11.40 7.26 -12.49 -0.09 11.31 16 14 O -0.58 -15.76 16.84 5.25 0.09 -15.67 16 15 N -0.43 -10.57 2.99 -123.40 -0.37 -10.94 16 16 C 0.04 0.82 8.57 59.85 0.51 1.34 16 17 C -0.35 -9.33 8.74 -15.00 -0.13 -9.46 16 18 H 0.10 2.80 7.94 -52.49 -0.42 2.39 16 19 C 0.08 1.90 5.32 -17.45 -0.09 1.81 16 20 N -0.82 -20.28 10.78 55.50 0.60 -19.68 16 21 Si 0.89 19.62 29.69 -169.99 -5.05 14.58 16 22 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 C -0.09 -1.43 7.34 -39.20 -0.29 -1.72 16 26 C -0.12 -1.67 9.97 -39.49 -0.39 -2.07 16 27 C -0.21 -2.21 8.99 -39.67 -0.36 -2.57 16 28 C -0.03 -0.26 9.44 -39.31 -0.37 -0.63 16 29 H 0.09 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.08 0.49 8.12 -51.93 -0.42 0.06 16 31 H 0.09 0.42 8.08 -51.92 -0.42 0.00 16 32 H 0.14 1.24 7.64 -52.48 -0.40 0.83 16 33 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 35 H 0.14 2.21 8.06 -52.48 -0.42 1.79 16 36 H 0.04 0.76 7.79 -51.93 -0.40 0.35 16 37 H 0.12 2.69 5.13 -51.93 -0.27 2.43 16 38 H 0.05 0.90 4.58 -51.93 -0.24 0.67 16 39 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 40 H 0.14 2.18 5.73 -52.49 -0.30 1.88 16 41 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 42 H 0.14 1.57 6.57 -52.49 -0.34 1.23 16 43 H 0.14 0.85 7.04 -52.49 -0.37 0.48 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -31.08 368.15 -8.16 -39.24 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.83 Total: 4.04 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -4.22 Total: -8.08 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: 0.23 Total: -30.62 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: 0.16 Total: -24.70 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.05 Total: 14.58 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.08 -8.16 -39.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090039989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.084 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds