Wall clock time and date at job start Tue Mar 31 2020 05:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46733 * 2 1 4 4 C 1.52994 * 109.47154 * 240.00144 * 2 1 3 5 5 C 1.53003 * 109.46875 * 119.99963 * 2 1 3 6 6 N 1.46496 * 109.47291 * 54.26488 * 5 2 1 7 7 C 1.46507 * 120.00250 * 275.81276 * 6 5 2 8 8 C 1.50695 * 109.46852 * 270.00249 * 7 6 5 9 9 H 1.08003 * 120.00468 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00046 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99838 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00182 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46958 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.46993 * 119.99706 * 12 10 8 15 15 H 1.48501 * 109.47089 * 239.99520 * 12 10 8 16 16 C 1.34775 * 120.00058 * 95.80898 * 6 5 2 17 17 O 1.21278 * 120.00231 * 185.44082 * 16 6 5 18 18 C 1.50700 * 119.99836 * 5.44368 * 16 6 5 19 19 C 1.53005 * 109.47011 * 174.41998 * 18 16 6 20 20 N 1.46499 * 109.46960 * 180.02562 * 19 18 16 21 21 C 1.34950 * 126.04079 * 125.02941 * 20 19 18 22 22 C 1.35312 * 107.74501 * 179.97438 * 21 20 19 23 23 N 1.48030 * 126.03348 * 180.02562 * 22 21 20 24 24 O 1.21801 * 119.99802 * 179.97438 * 23 22 21 25 25 O 1.21795 * 120.00226 * 359.96333 * 23 22 21 26 26 C 1.39860 * 107.92391 * 359.97438 * 22 21 20 27 27 N 1.30831 * 108.20382 * 359.97438 * 26 22 21 28 28 H 1.08998 * 109.47271 * 299.99746 * 1 2 3 29 29 H 1.09003 * 109.46944 * 59.99926 * 1 2 3 30 30 H 1.09003 * 109.46890 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46689 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47305 * 299.99847 * 3 2 1 33 33 H 1.08998 * 109.47035 * 60.00109 * 3 2 1 34 34 H 1.09006 * 109.47160 * 304.12625 * 4 2 1 35 35 H 1.08997 * 109.47502 * 64.12911 * 4 2 1 36 36 H 1.09005 * 109.46832 * 184.13347 * 4 2 1 37 37 H 1.09005 * 109.46803 * 294.26386 * 5 2 1 38 38 H 1.09004 * 109.47054 * 174.26757 * 5 2 1 39 39 H 1.09010 * 109.46599 * 29.99570 * 7 6 5 40 40 H 1.08998 * 109.47279 * 149.99486 * 7 6 5 41 41 H 0.97005 * 119.99999 * 179.97438 * 11 10 8 42 42 H 1.09003 * 109.46879 * 54.42481 * 18 16 6 43 43 H 1.08996 * 109.47636 * 294.42139 * 18 16 6 44 44 H 1.09000 * 109.47191 * 60.00060 * 19 18 16 45 45 H 1.08995 * 109.47311 * 300.00034 * 19 18 16 46 46 H 1.07998 * 126.12231 * 359.96831 * 21 20 19 47 47 H 1.08000 * 125.89749 * 180.26968 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.4422 -2.0568 1.3203 7 6 0.1133 -2.2342 1.9111 8 6 0.2512 -2.4927 3.3893 9 1 1.2308 -2.5224 3.8433 10 6 -0.8730 -2.6924 4.1620 11 7 -2.0658 -2.6568 3.6092 12 14 -0.7020 -3.0136 5.9943 13 1 0.7356 -3.0042 6.3664 14 1 -1.4168 -1.9547 6.7513 15 1 -1.2890 -4.3379 6.3216 16 6 2.1147 -3.1224 0.8421 17 8 1.5819 -4.2114 0.8103 18 6 3.5289 -2.9608 0.3471 19 6 4.1051 -4.3331 -0.0075 20 7 5.4800 -4.1760 -0.4882 21 6 6.5700 -4.7994 0.0060 22 6 7.6415 -4.3863 -0.7097 23 7 9.0428 -4.8184 -0.5077 24 8 9.9257 -4.3742 -1.2196 25 8 9.3130 -5.6180 0.3704 26 6 7.1909 -3.4797 -1.6747 27 7 5.8953 -3.3535 -1.5435 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6175 -1.7253 -1.2870 35 1 1.7384 -0.1665 -2.1376 36 1 3.1275 -0.7858 -1.2129 37 1 1.7629 -0.1515 2.1363 38 1 3.1252 -0.8110 1.1995 39 1 -0.4776 -1.3318 1.7536 40 1 -0.3842 -3.0813 1.4388 41 1 -2.8567 -2.7977 4.1528 42 1 4.1366 -2.5021 1.1270 43 1 3.5335 -2.3250 -0.5382 44 1 3.4973 -4.7919 -0.7874 45 1 4.1005 -4.9689 0.8778 46 1 6.5845 -5.5022 0.8259 47 1 7.8055 -2.9750 -2.4053 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095351022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:38 Heat of formation + Delta-G solvation = 32.739195 kcal Electronic energy + Delta-G solvation = -29934.166617 eV Core-core repulsion = 25736.395171 eV Total energy + Delta-G solvation = -4197.771446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.63177 -41.54976 -39.82152 -37.31486 -36.61202 -34.92587 -33.98483 -32.55539 -31.62613 -30.91581 -28.20954 -27.31118 -26.89894 -26.40545 -25.67811 -24.71792 -22.69419 -21.87052 -21.45327 -19.45906 -19.24654 -18.59345 -18.17591 -17.66663 -17.18030 -16.82066 -16.30860 -16.00152 -15.42203 -15.33069 -14.85273 -14.52030 -14.26907 -14.03623 -13.82032 -13.73682 -13.15174 -12.83010 -12.75723 -12.53083 -12.24208 -12.08728 -11.95184 -11.68525 -11.56550 -11.46728 -11.45659 -11.25384 -11.23342 -11.14895 -11.01428 -10.94790 -10.69199 -10.54966 -10.38562 -10.27757 -10.24673 -9.83700 -9.66770 -9.19957 -8.53144 -7.81019 -6.15897 -4.21010 0.06997 1.01369 1.11967 1.91627 1.99326 3.09978 3.20897 3.29396 3.31915 3.53785 3.85090 3.97756 4.26817 4.34063 4.52114 4.60991 4.71881 4.79893 4.88258 4.91555 5.09208 5.15997 5.20671 5.31974 5.44660 5.52914 5.55013 5.60733 5.67535 5.84277 5.87077 5.97374 6.03858 6.04383 6.11870 6.19673 6.24805 6.32084 6.46292 6.66093 6.68598 6.92919 7.29931 7.38254 7.56038 7.79563 8.11056 8.20386 8.70306 8.87322 9.44353 10.91916 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.002924 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.232323 B = 9574.286999 C =11185.185293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.138 4.138 4 C -0.143 4.143 5 C 0.118 3.882 6 N -0.585 5.585 7 C 0.237 3.763 8 C -0.530 4.530 9 H 0.056 0.944 10 C 0.063 3.937 11 N -0.892 5.892 12 Si 0.896 3.104 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.282 1.282 16 C 0.514 3.486 17 O -0.546 6.546 18 C -0.168 4.168 19 C 0.141 3.859 20 N -0.338 5.338 21 C 0.157 3.843 22 C -0.200 4.200 23 N 0.072 4.928 24 O -0.168 6.168 25 O -0.177 6.177 26 C 0.111 3.889 27 N -0.264 5.264 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.263 0.737 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.117 0.883 46 H 0.206 0.794 47 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.807 3.388 -9.989 17.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 C -0.195 4.195 4 C -0.200 4.200 5 C -0.007 4.007 6 N -0.315 5.315 7 C 0.119 3.881 8 C -0.569 4.569 9 H 0.074 0.926 10 C -0.140 4.140 11 N -0.531 5.531 12 Si 0.724 3.276 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.208 1.208 16 C 0.299 3.701 17 O -0.425 6.425 18 C -0.209 4.209 19 C 0.021 3.979 20 N -0.115 5.115 21 C 0.002 3.998 22 C -0.298 4.298 23 N 0.587 4.413 24 O -0.382 6.382 25 O -0.388 6.388 26 C -0.079 4.079 27 N -0.084 5.084 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.112 0.888 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.135 0.865 46 H 0.222 0.778 47 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 11.386 3.561 -10.419 15.839 hybrid contribution 1.103 -0.564 1.493 1.940 sum 12.489 2.998 -8.926 15.640 Atomic orbital electron populations 1.22060 0.93710 1.03245 1.01099 1.20986 0.97050 0.95182 0.95503 1.21807 1.00518 0.95274 1.01937 1.22021 1.00120 1.00709 0.97178 1.21602 0.96750 0.84522 0.97799 1.48134 1.20556 1.05268 1.57541 1.19575 0.77070 0.98748 0.92746 1.21460 0.92942 1.49479 0.93030 0.92553 1.24915 0.95108 0.95099 0.98839 1.69932 0.97641 1.49557 1.35965 0.86472 0.78145 0.77999 0.84971 1.19861 1.20907 1.20844 1.19797 0.86605 0.85012 0.78650 1.90699 1.69645 1.25608 1.56541 1.22249 0.96561 0.97471 1.04592 1.21976 0.74564 0.99179 1.02151 1.49155 1.08030 1.30681 1.23671 1.22457 0.85123 0.95117 0.97118 1.21046 0.83422 1.14844 1.10467 1.42466 1.01536 0.98403 0.98878 1.94541 1.40314 1.58838 1.44488 1.94555 1.88251 1.29262 1.26777 1.23975 0.91916 0.94946 0.97034 1.77765 1.11344 1.14003 1.05272 0.92160 0.93622 0.91009 0.92932 0.92642 0.92368 0.92518 0.92720 0.92732 0.89930 0.91627 0.93423 0.93870 0.92685 0.88802 0.86788 0.87067 0.86453 0.77762 0.77469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 6.98 37.16 0.26 -1.85 16 2 C -0.09 -1.08 0.85 -154.51 -0.13 -1.21 16 3 C -0.14 -1.42 8.47 37.16 0.31 -1.10 16 4 C -0.14 -1.66 6.84 37.15 0.25 -1.41 16 5 C 0.12 1.70 4.58 -4.04 -0.02 1.68 16 6 N -0.59 -10.76 2.00 -175.05 -0.35 -11.11 16 7 C 0.24 5.60 3.93 -5.19 -0.02 5.58 16 8 C -0.53 -13.99 9.39 -34.44 -0.32 -14.32 16 9 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 12 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 13 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 C 0.51 8.96 6.40 -10.99 -0.07 8.89 16 17 O -0.55 -11.68 15.54 5.56 0.09 -11.59 16 18 C -0.17 -2.02 4.25 -27.88 -0.12 -2.14 16 19 C 0.14 1.44 5.82 -4.04 -0.02 1.42 16 20 N -0.34 -3.24 3.68 -61.37 -0.23 -3.46 16 21 C 0.16 1.36 11.13 -17.22 -0.19 1.17 16 22 C -0.20 -2.01 7.11 -80.38 -0.57 -2.58 16 23 N 0.07 0.87 4.45 33.75 0.15 1.02 16 24 O -0.17 -2.14 19.05 -29.46 -0.56 -2.70 16 25 O -0.18 -2.29 19.02 -29.46 -0.56 -2.85 16 26 C 0.11 1.00 11.75 -17.37 -0.20 0.80 16 27 N -0.26 -2.70 12.42 30.62 0.38 -2.32 16 28 H 0.06 0.93 7.72 -51.93 -0.40 0.53 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.25 5.76 -51.93 -0.30 0.95 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.76 6.74 -51.93 -0.35 0.41 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.56 6.49 -51.93 -0.34 0.23 16 37 H 0.08 1.28 8.12 -51.93 -0.42 0.86 16 38 H 0.07 0.79 6.11 -51.93 -0.32 0.47 16 39 H 0.05 1.13 5.32 -51.92 -0.28 0.86 16 40 H 0.04 1.18 7.35 -51.93 -0.38 0.80 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.09 1.04 7.34 -51.93 -0.38 0.66 16 43 H 0.11 1.28 4.67 -51.93 -0.24 1.04 16 44 H 0.11 1.19 8.04 -51.93 -0.42 0.77 16 45 H 0.12 1.10 8.07 -51.93 -0.42 0.68 16 46 H 0.21 1.18 8.06 -52.49 -0.42 0.76 16 47 H 0.21 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 387.92 15.07 5.85 5.85 Total: -1.00 -31.90 387.92 -7.21 -39.11 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.75 Total: 0.16 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -0.94 Total: -3.46 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.69 Total: -40.36 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -1.04 Total: -17.14 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.90 -7.21 -39.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095351022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.845 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds