Wall clock time and date at job start Tue Mar 31 2020 06:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86794 * 119.99721 * 2 1 4 4 H 1.48506 * 109.47046 * 269.99744 * 3 2 1 5 5 H 1.48500 * 109.47467 * 29.99625 * 3 2 1 6 6 H 1.48500 * 109.47339 * 150.00146 * 3 2 1 7 7 C 1.38979 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00326 * 180.02562 * 7 2 1 9 9 N 1.37320 * 120.00154 * 0.27711 * 7 2 1 10 10 C 1.36502 * 126.07222 * 179.72193 * 9 7 2 11 11 C 1.35689 * 107.50967 * 180.02562 * 10 9 7 12 12 N 1.40525 * 126.08919 * 180.02562 * 11 10 9 13 13 C 1.34778 * 120.00323 * 180.02562 * 12 11 10 14 14 O 1.21790 * 119.99705 * 359.97438 * 13 12 11 15 15 C 1.46132 * 119.99964 * 179.97438 * 13 12 11 16 16 C 1.37848 * 126.02748 * 179.97438 * 15 13 12 17 17 C 1.39901 * 106.68086 * 180.02562 * 16 15 13 18 18 C 1.36110 * 107.17786 * 0.02562 * 17 16 15 19 19 O 1.35365 * 125.58314 * 180.02562 * 18 17 16 20 20 C 1.35884 * 117.99964 * 175.11943 * 19 18 17 21 21 C 1.38753 * 120.05969 * 256.32897 * 20 19 18 22 22 C 1.38132 * 119.94210 * 179.79370 * 21 20 19 23 23 C 1.38271 * 120.05990 * 0.46239 * 22 21 20 24 24 C 1.38278 * 120.11265 * 359.78638 * 23 22 21 25 25 C 1.38130 * 120.06156 * 359.97438 * 24 23 22 26 26 O 1.34049 * 108.83609 * 359.73379 * 18 17 16 27 27 C 1.40676 * 107.82856 * 359.97438 * 11 10 9 28 28 N 1.30911 * 108.38923 * 359.71971 * 27 11 10 29 29 H 0.97002 * 120.00138 * 359.97438 * 1 2 3 30 30 H 1.08004 * 126.24310 * 0.02562 * 10 9 7 31 31 H 0.97004 * 120.00244 * 359.97438 * 12 11 10 32 32 H 1.07996 * 126.65512 * 0.02574 * 16 15 13 33 33 H 1.07994 * 126.41319 * 180.02562 * 17 16 15 34 34 H 1.08006 * 120.02995 * 359.97438 * 21 20 19 35 35 H 1.08007 * 119.97407 * 180.20704 * 22 21 20 36 36 H 1.07999 * 119.94632 * 179.76877 * 23 22 21 37 37 H 1.07998 * 119.97011 * 179.97438 * 24 23 22 38 38 H 1.07999 * 120.03211 * 179.97438 * 25 24 23 39 39 H 1.08002 * 125.80401 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.4944 2.0464 -1.4001 5 1 1.4443 2.6527 0.6999 6 1 3.5444 1.4403 0.7000 7 6 2.0079 -1.2036 0.0005 8 1 3.0878 -1.2036 0.0010 9 7 1.3214 -2.3928 -0.0047 10 6 1.8751 -3.6405 -0.0102 11 6 0.8579 -4.5385 -0.0147 12 7 0.9890 -5.9376 -0.0205 13 6 -0.1102 -6.7175 -0.0251 14 8 -1.2172 -6.2096 -0.0237 15 6 0.0262 -8.1724 -0.0318 16 6 -1.0081 -9.0837 -0.0364 17 6 -0.4235 -10.3547 -0.0414 18 6 0.9259 -10.1765 -0.0391 19 8 1.8510 -11.1647 -0.0430 20 6 3.1598 -10.8131 -0.1419 21 6 3.8323 -10.9691 -1.3455 22 6 5.1616 -10.6068 -1.4445 23 6 5.8247 -10.0980 -0.3430 24 6 5.1582 -9.9463 0.8590 25 6 3.8276 -10.3024 0.9621 26 8 1.1889 -8.8620 -0.0388 27 6 -0.3513 -3.8197 -0.0113 28 7 -0.0715 -2.5409 0.0011 29 1 -0.4850 0.8401 0.0004 30 1 2.9303 -3.8708 -0.0108 31 1 1.8706 -6.3422 -0.0220 32 1 -2.0646 -8.8599 -0.0362 33 1 -0.9451 -11.3003 -0.0462 34 1 3.3161 -11.3707 -2.2050 35 1 5.6846 -10.7249 -2.3821 36 1 6.8650 -9.8188 -0.4215 37 1 5.6785 -9.5491 1.7180 38 1 3.3076 -10.1842 1.9013 39 1 -1.3420 -4.2498 -0.0139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095407178.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:53 Heat of formation + Delta-G solvation = 73.268235 kcal Electronic energy + Delta-G solvation = -27338.547979 eV Core-core repulsion = 23216.291168 eV Total energy + Delta-G solvation = -4122.256811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.105 amu Computer time = 3.84 seconds Orbital eigenvalues (eV) -42.87768 -40.51428 -39.84317 -38.47134 -38.01504 -34.39112 -33.36156 -33.06234 -31.45280 -30.86028 -30.30802 -29.22401 -27.58064 -25.09904 -23.97566 -23.21331 -22.27424 -22.04842 -20.99990 -20.33313 -19.44831 -19.35898 -17.94952 -17.30647 -17.13979 -16.88476 -16.10716 -15.77361 -15.50147 -15.25088 -14.69770 -14.40566 -14.36391 -13.90541 -13.86768 -13.41792 -13.34270 -13.15593 -13.13910 -13.04919 -12.86034 -12.77040 -12.01943 -11.69822 -11.48104 -11.37749 -11.28090 -10.99448 -10.54990 -10.26178 -10.11974 -9.57294 -9.44317 -9.27280 -9.20546 -8.84947 -8.25843 -8.08074 -6.73388 -6.58007 -4.25142 0.56528 0.90070 1.05753 2.12572 2.25844 2.85442 2.93190 3.03850 3.09180 3.27500 3.36278 3.56113 3.72620 3.86695 4.41302 4.44654 4.45353 4.64551 4.68857 4.73343 4.92153 5.00005 5.00127 5.05222 5.12100 5.52243 5.53001 5.57682 5.69731 5.88044 5.90540 6.03596 6.19680 6.20164 6.30109 6.38680 6.51877 6.85328 6.91699 7.04186 7.15252 7.19569 7.82732 8.10281 8.22203 8.54958 8.74796 9.34357 9.63242 10.37900 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013802 B = 0.002570 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.145360 B =10893.339288 C =12643.807320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.141 5.141 10 C -0.081 4.081 11 C -0.063 4.063 12 N -0.609 5.609 13 C 0.586 3.414 14 O -0.516 6.516 15 C -0.073 4.073 16 C -0.097 4.097 17 C -0.227 4.227 18 C 0.194 3.806 19 O -0.203 6.203 20 C 0.061 3.939 21 C -0.111 4.111 22 C -0.108 4.108 23 C -0.110 4.110 24 C -0.105 4.105 25 C -0.119 4.119 26 O -0.184 6.184 27 C -0.029 4.029 28 N -0.259 5.259 29 H 0.275 0.725 30 H 0.146 0.854 31 H 0.401 0.599 32 H 0.169 0.831 33 H 0.163 0.837 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.691 -21.038 -0.563 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.092 4.908 10 C -0.232 4.232 11 C -0.169 4.169 12 N -0.249 5.249 13 C 0.372 3.628 14 O -0.394 6.394 15 C -0.124 4.124 16 C -0.118 4.118 17 C -0.247 4.247 18 C 0.100 3.900 19 O -0.116 6.116 20 C 0.019 3.981 21 C -0.130 4.130 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.137 4.137 26 O -0.084 6.084 27 C -0.205 4.205 28 N -0.090 5.090 29 H 0.086 0.914 30 H 0.164 0.836 31 H 0.234 0.766 32 H 0.187 0.813 33 H 0.181 0.819 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 8.472 -19.355 -0.534 21.134 hybrid contribution 1.386 -0.566 0.017 1.497 sum 9.859 -19.920 -0.517 22.232 Atomic orbital electron populations 1.70215 1.06140 1.28074 1.35028 1.25650 0.95722 1.00304 0.95452 0.85815 0.79387 0.79886 0.78991 1.19564 1.20049 1.18792 1.19890 0.91700 0.80516 1.53380 0.86556 1.44573 1.04077 1.03302 1.38821 1.21244 0.96830 0.85306 1.19797 1.17240 0.94545 0.80749 1.24356 1.42377 1.08046 1.04819 1.69658 1.16169 0.85050 0.81859 0.79771 1.90805 1.25346 1.71427 1.51863 1.22332 0.81853 0.92510 1.15720 1.21950 1.00384 0.89781 0.99684 1.20754 0.88577 1.00003 1.15325 1.20876 0.88982 0.77979 1.02170 1.84754 1.13458 1.25042 1.88325 1.18731 0.81876 1.03054 0.94410 1.21289 0.95644 0.99940 0.96107 1.21101 0.93743 0.98457 0.99271 1.21359 1.00460 0.98095 0.92846 1.21116 0.93739 0.99063 0.98429 1.21486 0.95712 0.98119 0.98373 1.84034 1.34904 1.16880 1.72532 1.24136 0.97961 0.90743 1.07634 1.78272 0.90074 1.14963 1.25712 0.91388 0.83620 0.76603 0.81337 0.81902 0.84806 0.84870 0.85144 0.84883 0.84995 0.80585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.39 11.81 55.49 0.66 -20.74 16 2 C 0.05 1.19 5.50 -17.51 -0.10 1.09 16 3 Si 0.94 18.80 29.55 -169.99 -5.02 13.77 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.32 -8.51 10.25 -14.82 -0.15 -8.66 16 8 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 9 N -0.14 -3.86 3.74 -11.41 -0.04 -3.91 16 10 C -0.08 -1.91 11.49 -16.39 -0.19 -2.10 16 11 C -0.06 -1.49 6.90 -83.86 -0.58 -2.07 16 12 N -0.61 -11.61 5.46 -11.32 -0.06 -11.67 16 13 C 0.59 11.10 7.74 -13.09 -0.10 11.00 16 14 O -0.52 -11.29 14.01 5.11 0.07 -11.22 16 15 C -0.07 -1.13 7.15 -36.56 -0.26 -1.40 16 16 C -0.10 -1.29 10.66 -39.10 -0.42 -1.71 16 17 C -0.23 -2.62 10.89 -39.72 -0.43 -3.05 16 18 C 0.19 2.44 7.76 29.97 0.23 2.68 16 19 O -0.20 -2.35 10.04 -25.16 -0.25 -2.60 16 20 C 0.06 0.64 5.42 -39.20 -0.21 0.43 16 21 C -0.11 -1.00 9.99 -39.43 -0.39 -1.39 16 22 C -0.11 -0.80 10.04 -39.61 -0.40 -1.20 16 23 C -0.11 -0.79 10.04 -39.55 -0.40 -1.18 16 24 C -0.11 -0.83 10.04 -39.61 -0.40 -1.23 16 25 C -0.12 -1.14 9.84 -39.43 -0.39 -1.52 16 26 O -0.18 -2.59 9.87 -19.32 -0.19 -2.78 16 27 C -0.03 -0.77 10.85 -17.02 -0.18 -0.96 16 28 N -0.26 -7.55 10.40 30.81 0.32 -7.23 16 29 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.15 2.89 8.06 -52.48 -0.42 2.47 16 31 H 0.40 6.37 8.57 -40.82 -0.35 6.02 16 32 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 36 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.18 4.59 5.91 -52.49 -0.31 4.28 16 LS Contribution 355.85 15.07 5.36 5.36 Total: -1.00 -33.37 355.85 -7.12 -40.49 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -3.59 Total: 11.80 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -4.37 Total: -11.28 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.87 Total: -43.55 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.37 Total: -16.60 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.37 -7.12 -40.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095407178.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.759 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.84 seconds