Wall clock time and date at job start Tue Mar 31 2020 06:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47093 * 35.88652 * 3 2 1 5 5 N 1.46496 * 109.46942 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00129 * 269.99599 * 5 4 3 7 7 C 1.50709 * 109.47273 * 270.00327 * 6 5 4 8 8 H 1.07999 * 119.99476 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00210 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99914 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00074 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46996 * 90.00193 * 11 9 7 13 13 H 1.48502 * 109.46931 * 210.00078 * 11 9 7 14 14 H 1.48498 * 109.47167 * 330.00145 * 11 9 7 15 15 C 1.34777 * 120.00345 * 90.00092 * 5 4 3 16 16 O 1.21283 * 120.00463 * 179.97438 * 15 5 4 17 17 C 1.50700 * 119.99675 * 359.72090 * 15 5 4 18 18 N 1.46499 * 109.47257 * 180.27849 * 17 15 5 19 19 C 1.39729 * 120.00395 * 180.02562 * 18 17 15 20 20 C 1.38933 * 120.05350 * 180.02562 * 19 18 17 21 21 C 1.38105 * 119.98622 * 179.97438 * 20 19 18 22 22 C 1.38360 * 120.08845 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 119.95022 * 179.97438 * 22 21 20 24 24 C 1.38584 * 120.09389 * 359.97438 * 22 21 20 25 25 F 1.35106 * 119.98546 * 179.97438 * 24 22 21 26 26 C 1.38337 * 120.01851 * 359.67944 * 24 22 21 27 27 H 1.08998 * 109.47246 * 275.88745 * 3 2 1 28 28 H 1.08997 * 109.47083 * 155.88040 * 3 2 1 29 29 H 1.08995 * 109.47592 * 59.99506 * 4 3 2 30 30 H 1.09002 * 109.47093 * 299.99814 * 4 3 2 31 31 H 1.09000 * 109.46889 * 29.99981 * 6 5 4 32 32 H 1.09001 * 109.47460 * 150.00590 * 6 5 4 33 33 H 0.97000 * 120.00447 * 179.97438 * 10 9 7 34 34 H 1.09009 * 109.47352 * 300.27556 * 17 15 5 35 35 H 1.08998 * 109.47585 * 60.27844 * 17 15 5 36 36 H 0.97002 * 119.99778 * 0.02562 * 18 17 15 37 37 H 1.07994 * 120.00319 * 0.02562 * 20 19 18 38 38 H 1.08000 * 119.96024 * 179.97438 * 21 20 19 39 39 H 1.07997 * 120.04497 * 180.31866 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.1678 -0.8456 5 7 4.5835 -1.1668 -0.8461 6 6 5.3151 -0.4228 -1.8743 7 6 5.5665 -1.3190 -3.0596 8 1 5.2166 -2.3407 -3.0479 9 6 6.2431 -0.8346 -4.1589 10 7 6.6696 0.4094 -4.1730 11 14 6.5553 -1.9456 -5.6278 12 1 5.4247 -1.8316 -6.5838 13 1 7.8148 -1.5359 -6.2994 14 1 6.6746 -3.3525 -5.1678 15 6 5.2582 -1.8503 0.0994 16 8 6.4711 -1.8499 0.0988 17 6 4.5056 -2.6106 1.1609 18 7 5.4584 -3.2582 2.0659 19 6 4.9936 -4.0258 3.1370 20 6 5.8962 -4.6399 3.9963 21 6 5.4353 -5.3979 5.0547 22 6 4.0753 -5.5473 5.2606 23 17 3.4999 -6.5014 6.5918 24 6 3.1718 -4.9362 4.4056 25 9 1.8443 -5.0840 4.6084 26 6 3.6289 -4.1702 3.3483 27 1 2.9714 -0.1046 1.0222 28 1 2.9709 0.9387 -0.4199 29 1 2.7551 -1.0627 -1.8678 30 1 2.7556 -2.1060 -0.4257 31 1 4.7253 0.4383 -2.1886 32 1 6.2675 -0.0822 -1.4680 33 1 7.1459 0.7502 -4.9462 34 1 3.8786 -1.9210 1.7262 35 1 3.8793 -3.3683 0.6900 36 1 6.4119 -3.1540 1.9217 37 1 6.9580 -4.5239 3.8370 38 1 6.1373 -5.8755 5.7222 39 1 2.9252 -3.6896 2.6848 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095414052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:27 Heat of formation + Delta-G solvation = -31.336292 kcal Electronic energy + Delta-G solvation = -25738.511121 eV Core-core repulsion = 21621.658256 eV Total energy + Delta-G solvation = -4116.852864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.089 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.12406 -40.04263 -39.19931 -37.05237 -36.78744 -35.61069 -35.03978 -33.00865 -31.02435 -30.94672 -30.19478 -27.97722 -26.25321 -24.20749 -23.43659 -22.74846 -21.95926 -19.10799 -18.36225 -17.75507 -17.13102 -16.73718 -16.56878 -16.55361 -15.95668 -15.86553 -15.36695 -15.21568 -14.81973 -14.80691 -14.25386 -14.01159 -13.96707 -13.48647 -13.36018 -13.09366 -12.87452 -12.57004 -12.50134 -12.36985 -12.23597 -11.95309 -11.86940 -11.77058 -11.40908 -11.11267 -11.05403 -11.00855 -10.73908 -10.31717 -10.05359 -9.85746 -9.38861 -9.17681 -8.58404 -8.09398 -7.72409 -6.20322 -4.25758 0.87590 1.00203 1.95674 2.61814 2.73172 2.91042 2.98319 3.21290 3.29112 3.30717 3.32408 3.52277 3.93594 4.04489 4.31753 4.41007 4.66279 4.78584 4.82947 4.93103 4.95529 5.08120 5.14371 5.16923 5.19891 5.36370 5.53553 5.66340 5.68207 5.80586 5.86179 5.92218 6.31138 6.67323 6.92617 7.14210 7.24165 7.47246 7.49200 7.74589 7.99001 8.03017 8.54223 8.79121 9.40456 10.87840 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.012681 B = 0.002626 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.422797 B =10658.949961 C =12142.280108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.214 3.786 3 C -0.050 4.050 4 C 0.113 3.887 5 N -0.589 5.589 6 C 0.244 3.756 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.503 3.497 16 O -0.528 6.528 17 C 0.093 3.907 18 N -0.719 5.719 19 C 0.260 3.740 20 C -0.194 4.194 21 C -0.031 4.031 22 C -0.140 4.140 23 Cl -0.067 7.067 24 C 0.161 3.839 25 F -0.128 7.128 26 C -0.233 4.233 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.265 0.735 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.418 0.582 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.465 -7.598 16.955 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.104 4.104 3 C -0.092 4.092 4 C -0.013 4.013 5 N -0.320 5.320 6 C 0.126 3.874 7 C -0.571 4.571 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.289 3.711 16 O -0.404 6.404 17 C -0.035 4.035 18 N -0.348 5.348 19 C 0.152 3.848 20 C -0.217 4.217 21 C -0.051 4.051 22 C -0.170 4.170 23 Cl -0.038 7.038 24 C 0.141 3.859 25 F -0.106 7.106 26 C -0.257 4.257 27 H 0.124 0.876 28 H 0.137 0.863 29 H 0.117 0.883 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.258 0.742 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.621 -7.409 16.767 19.173 hybrid contribution 0.569 -0.552 -0.896 1.196 sum -5.052 -7.960 15.871 18.460 Atomic orbital electron populations 1.81232 1.12997 1.08649 1.08851 1.29034 0.95040 0.93230 0.93095 1.19875 0.81545 1.03887 1.03879 1.21394 0.81818 0.96224 1.01894 1.48179 1.05091 1.49723 1.29057 1.19427 0.92659 0.91045 0.84263 1.21373 1.37190 0.98320 1.00241 0.92317 1.24912 0.95157 0.95176 0.98643 1.69909 1.38047 1.14493 1.30605 0.86500 0.77800 0.80878 0.82290 1.20568 1.21044 1.19860 1.20105 0.88172 0.80366 0.82459 1.90700 1.13568 1.61888 1.74294 1.21363 0.92659 0.97631 0.91832 1.44583 1.10021 1.52768 1.27465 1.17547 0.91700 0.88702 0.86841 1.20629 0.99854 1.03847 0.97362 1.20633 0.92467 0.95648 0.96343 1.20606 0.93889 1.06440 0.96066 1.98355 1.89221 1.70789 1.45444 1.17038 0.77145 0.97029 0.94738 1.91535 1.30798 1.93899 1.94416 1.20475 0.95060 1.08146 1.02026 0.87585 0.86298 0.88259 0.90498 0.94387 0.93398 0.92534 0.89284 0.89088 0.74224 0.84372 0.84119 0.83983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.10 18.54 42.15 0.78 -5.32 16 2 C 0.21 2.34 15.43 -20.76 -0.32 2.02 16 3 C -0.05 -0.45 6.02 -29.52 -0.18 -0.62 16 4 C 0.11 1.28 5.16 -4.04 -0.02 1.26 16 5 N -0.59 -9.45 2.46 -175.06 -0.43 -9.88 16 6 C 0.24 5.33 5.16 -5.19 -0.03 5.31 16 7 C -0.53 -13.40 9.39 -34.44 -0.32 -13.72 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -24.44 13.29 55.43 0.74 -23.70 16 11 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 C 0.50 7.94 7.74 -10.98 -0.09 7.85 16 16 O -0.53 -10.65 15.25 5.55 0.08 -10.56 16 17 C 0.09 1.00 3.95 -5.19 -0.02 0.98 16 18 N -0.72 -7.89 5.71 -59.80 -0.34 -8.23 16 19 C 0.26 2.63 6.65 -83.78 -0.56 2.07 16 20 C -0.19 -1.74 9.89 -39.37 -0.39 -2.13 16 21 C -0.03 -0.27 9.82 -39.59 -0.39 -0.66 16 22 C -0.14 -1.45 6.33 -39.41 -0.25 -1.70 16 23 Cl -0.07 -0.67 28.61 -51.86 -1.48 -2.16 16 24 C 0.16 1.77 7.27 -39.42 -0.29 1.48 16 25 F -0.13 -1.52 16.83 2.25 0.04 -1.48 16 26 C -0.23 -2.36 9.29 -39.32 -0.37 -2.72 16 27 H 0.11 0.71 7.20 -51.93 -0.37 0.34 16 28 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.10 1.24 8.07 -51.93 -0.42 0.82 16 30 H 0.08 0.68 6.45 -51.93 -0.34 0.35 16 31 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.05 1.20 7.42 -51.93 -0.39 0.82 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 34 H 0.09 0.73 6.95 -51.92 -0.36 0.37 16 35 H 0.09 0.87 7.22 -51.93 -0.38 0.49 16 36 H 0.42 4.99 7.45 -40.82 -0.30 4.68 16 37 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.14 1.25 6.73 -52.49 -0.35 0.89 16 LS Contribution 365.04 15.07 5.50 5.50 Total: -1.00 -31.07 365.04 -7.58 -38.65 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -4.14 Total: 0.77 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -3.31 Total: 1.01 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.75 Total: -47.13 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.48 Total: -2.16 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.07 -7.58 -38.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095414052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.313 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds