Wall clock time and date at job start Tue Mar 31 2020 07:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47250 * 2 1 4 4 O 1.42901 * 109.47191 * 240.00107 * 2 1 3 5 5 C 1.35905 * 116.99770 * 208.43866 * 4 2 1 6 6 C 1.38758 * 120.17303 * 354.21249 * 5 4 2 7 7 C 1.37839 * 119.70836 * 179.61349 * 6 5 4 8 8 C 1.38956 * 120.62369 * 0.52445 * 7 6 5 9 9 C 1.37706 * 119.76995 * 359.92023 * 8 7 6 10 10 C 1.38423 * 120.17133 * 174.49126 * 5 4 2 11 11 C 1.50643 * 122.56368 * 179.55744 * 9 8 7 12 12 H 1.08998 * 109.25171 * 257.41363 * 11 9 8 13 13 N 1.46506 * 109.25178 * 137.98794 * 11 9 8 14 14 S 1.65602 * 120.00017 * 125.60659 * 13 11 9 15 15 O 1.42100 * 106.40217 * 180.13567 * 14 13 11 16 16 O 1.42099 * 106.40224 * 313.05937 * 14 13 11 17 17 C 1.76199 * 107.21589 * 66.59832 * 14 13 11 18 18 H 1.08007 * 120.00150 * 359.97438 * 17 14 13 19 19 C 1.37878 * 120.00070 * 180.02562 * 17 14 13 20 20 N 1.31515 * 119.99867 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 119.99999 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47501 * 59.99837 * 21 19 17 23 23 H 1.48504 * 109.47084 * 180.02562 * 21 19 17 24 24 H 1.48510 * 109.47043 * 299.99650 * 21 19 17 25 25 C 1.52726 * 110.59764 * 17.70530 * 11 9 8 26 26 C 1.53333 * 108.37328 * 308.90081 * 25 11 9 27 27 C 1.50660 * 117.69234 * 180.08485 * 8 7 6 28 28 H 1.08997 * 109.46841 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47002 * 300.00179 * 1 2 3 30 30 H 1.08999 * 109.46867 * 59.99892 * 1 2 3 31 31 H 1.08998 * 109.47369 * 119.99944 * 2 1 3 32 32 H 1.09004 * 109.47264 * 59.99981 * 3 2 1 33 33 H 1.08997 * 109.47033 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46889 * 300.00237 * 3 2 1 35 35 H 1.07998 * 120.15116 * 359.90161 * 6 5 4 36 36 H 1.08000 * 119.68704 * 180.21509 * 7 6 5 37 37 H 1.07997 * 119.74980 * 0.07536 * 10 5 4 38 38 H 0.96999 * 120.00087 * 305.61196 * 13 11 9 39 39 H 0.96995 * 119.99768 * 179.97438 * 20 19 17 40 40 H 1.09002 * 109.68742 * 68.61845 * 25 11 9 41 41 H 1.08994 * 109.68828 * 189.17932 * 25 11 9 42 42 H 1.09005 * 109.68109 * 189.63106 * 26 25 11 43 43 H 1.09000 * 109.68073 * 310.14656 * 26 25 11 44 44 H 1.08996 * 109.25177 * 77.25821 * 27 8 7 45 45 H 1.09002 * 109.24868 * 317.83451 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 3.2160 -1.2864 -1.0748 6 6 3.9857 -1.1419 0.0707 7 6 5.2074 -1.7741 0.1569 8 6 5.6808 -2.5463 -0.8969 9 6 4.9228 -2.6837 -2.0383 10 6 3.6891 -2.0532 -2.1256 11 6 5.3789 -3.4970 -3.2215 12 1 5.7378 -2.8261 -4.0019 13 7 4.2497 -4.2756 -3.7365 14 16 3.8230 -4.1591 -5.3324 15 8 2.7073 -5.0203 -5.5133 16 8 3.7920 -2.7720 -5.6392 17 6 5.1416 -4.8481 -6.2764 18 1 6.0151 -5.2412 -5.7774 19 6 5.0587 -4.8846 -7.6522 20 7 3.9952 -4.4056 -8.2598 21 14 6.4569 -5.6145 -8.6531 22 1 6.6526 -7.0352 -8.2677 23 1 6.1254 -5.5343 -10.0984 24 1 7.7045 -4.8535 -8.3889 25 6 6.5039 -4.4480 -2.8183 26 6 7.5814 -3.6390 -2.0864 27 6 7.0236 -3.2092 -0.7312 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.6270 -0.5405 0.8929 36 1 5.8047 -1.6643 1.0500 37 1 3.0938 -2.1621 -3.0201 38 1 3.7521 -4.8593 -3.1428 39 1 3.9371 -4.4309 -9.2277 40 1 6.1122 -5.2206 -2.1567 41 1 6.9320 -4.9087 -3.7084 42 1 8.4676 -4.2565 -1.9395 43 1 7.8410 -2.7580 -2.6733 44 1 6.9152 -4.0859 -0.0927 45 1 7.7152 -2.5082 -0.2638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439861.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:21 Heat of formation + Delta-G solvation = -124.483220 kcal Electronic energy + Delta-G solvation = -28126.435682 eV Core-core repulsion = 24234.588019 eV Total energy + Delta-G solvation = -3891.847663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.99 seconds Orbital eigenvalues (eV) -40.46815 -38.88327 -35.77972 -35.14311 -34.08989 -33.90196 -33.10448 -32.96379 -30.40309 -29.49494 -27.51524 -27.41285 -26.09917 -23.46248 -22.96538 -21.86524 -21.16573 -19.36259 -18.93815 -17.95501 -17.42038 -16.25280 -16.08242 -15.78473 -15.41209 -15.19373 -14.80539 -14.68553 -14.22219 -13.92527 -13.77519 -13.46513 -13.33054 -13.23243 -13.06997 -12.60921 -12.45808 -12.39174 -12.32840 -12.20401 -11.98508 -11.49675 -11.41597 -11.27833 -11.18630 -10.98953 -10.72521 -10.71014 -10.60813 -10.54556 -10.40784 -10.24804 -10.16425 -9.98364 -9.21771 -9.07442 -8.71132 -8.42483 -7.86653 -6.67703 -5.29964 1.44893 1.57914 2.38073 3.09848 3.14483 3.19757 3.22170 3.86078 4.08403 4.59109 4.65129 4.68201 4.74155 4.80991 4.84130 4.92290 4.99171 5.12801 5.20560 5.27991 5.33006 5.35490 5.43665 5.53937 5.58069 5.66159 5.69783 5.74240 5.83825 5.88435 5.93267 5.97148 5.99251 6.02702 6.09137 6.21994 6.34603 6.42494 6.52065 6.56673 6.61526 6.80724 6.86882 7.02419 7.34762 7.59650 7.93275 8.00398 8.91022 10.26551 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013915 B = 0.003777 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.683057 B = 7411.887662 C = 8923.064573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.075 3.925 3 C -0.178 4.178 4 O -0.308 6.308 5 C 0.123 3.877 6 C -0.210 4.210 7 C -0.089 4.089 8 C -0.109 4.109 9 C -0.040 4.040 10 C -0.131 4.131 11 C 0.200 3.800 12 H 0.107 0.893 13 N -1.129 6.129 14 S 2.711 3.289 15 O -1.006 7.006 16 O -1.004 7.004 17 C -1.021 5.021 18 H 0.103 0.897 19 C 0.133 3.867 20 N -0.845 5.845 21 Si 0.919 3.081 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.264 1.264 25 C -0.132 4.132 26 C -0.120 4.120 27 C -0.073 4.073 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.135 0.865 38 H 0.403 0.597 39 H 0.291 0.709 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.108 6.145 18.781 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.019 3.981 3 C -0.235 4.235 4 O -0.223 6.223 5 C 0.078 3.922 6 C -0.229 4.229 7 C -0.107 4.107 8 C -0.110 4.110 9 C -0.042 4.042 10 C -0.150 4.150 11 C 0.092 3.908 12 H 0.124 0.876 13 N -0.880 5.880 14 S 2.811 3.189 15 O -0.997 6.997 16 O -0.994 6.994 17 C -1.155 5.155 18 H 0.121 0.879 19 C -0.085 4.085 20 N -0.475 5.475 21 Si 0.743 3.257 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.188 1.188 25 C -0.171 4.171 26 C -0.158 4.158 27 C -0.110 4.110 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.153 0.847 38 H 0.234 0.766 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.114 6.717 18.003 19.331 hybrid contribution 1.026 -0.753 -0.111 1.277 sum 3.140 5.964 17.892 19.120 Atomic orbital electron populations 1.21874 0.92723 1.03244 1.02913 1.22412 0.95326 0.92635 0.87715 1.22353 1.02158 0.96067 1.02969 1.86179 1.32410 1.66179 1.37504 1.18879 0.85327 0.93474 0.94530 1.21114 0.97131 1.06170 0.98442 1.20833 0.95265 0.96582 0.98010 1.19515 0.97212 1.00565 0.93690 1.19789 0.93098 0.96447 0.94871 1.20573 0.97216 0.98444 0.98751 1.19370 0.86209 0.91514 0.93740 0.87556 1.56139 1.43489 1.57887 1.30518 1.00550 0.74807 0.73648 0.69898 1.93375 1.53657 1.68487 1.84149 1.93376 1.88217 1.35452 1.82334 1.30566 1.24255 1.57186 1.03443 0.87871 1.24740 0.96149 0.90516 0.97081 1.69892 1.27143 1.37864 1.12562 0.86222 0.81200 0.80151 0.78115 1.18869 1.20162 1.18811 1.22034 0.95511 0.98202 1.01349 1.21564 0.98014 1.00484 0.95770 1.20402 0.92878 0.99665 0.98074 0.91601 0.90777 0.91331 0.90985 0.91274 0.91868 0.91317 0.85721 0.86221 0.84737 0.76611 0.89849 0.91185 0.90061 0.91290 0.91231 0.91016 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.56 37.16 0.36 -1.00 16 2 C 0.08 0.81 2.83 -26.73 -0.08 0.73 16 3 C -0.18 -1.64 9.27 37.16 0.34 -1.30 16 4 O -0.31 -4.70 9.79 -19.44 -0.19 -4.89 16 5 C 0.12 1.93 6.63 -39.32 -0.26 1.66 16 6 C -0.21 -2.68 8.42 -39.54 -0.33 -3.01 16 7 C -0.09 -1.08 9.60 -39.46 -0.38 -1.45 16 8 C -0.11 -1.47 5.74 -104.57 -0.60 -2.07 16 9 C -0.04 -0.66 5.55 -104.63 -0.58 -1.24 16 10 C -0.13 -2.35 9.15 -39.30 -0.36 -2.70 16 11 C 0.20 3.52 2.81 -69.25 -0.19 3.33 16 12 H 0.11 2.05 7.51 -51.93 -0.39 1.66 16 13 N -1.13 -22.57 4.47 -6.02 -0.03 -22.60 16 14 S 2.71 71.91 4.93 -107.50 -0.53 71.38 16 15 O -1.01 -29.81 18.02 -57.17 -1.03 -30.84 16 16 O -1.00 -29.28 17.43 -57.17 -1.00 -30.27 16 17 C -1.02 -27.76 9.74 30.60 0.30 -27.46 16 18 H 0.10 2.51 7.39 -52.48 -0.39 2.12 16 19 C 0.13 3.71 5.46 -17.82 -0.10 3.61 16 20 N -0.85 -24.96 13.19 55.43 0.73 -24.23 16 21 Si 0.92 20.46 29.54 -169.99 -5.02 15.44 16 22 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 25 C -0.13 -1.89 5.57 -26.70 -0.15 -2.04 16 26 C -0.12 -1.40 5.98 -26.70 -0.16 -1.56 16 27 C -0.07 -0.79 5.67 -28.04 -0.16 -0.95 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.68 6.11 -51.93 -0.32 0.37 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.61 7.29 -51.93 -0.38 0.23 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.13 1.27 5.59 -52.49 -0.29 0.98 16 36 H 0.12 1.11 8.05 -52.49 -0.42 0.68 16 37 H 0.13 2.75 7.61 -52.49 -0.40 2.35 16 38 H 0.40 7.15 8.96 -34.47 -0.31 6.84 16 39 H 0.29 7.75 8.31 -40.82 -0.34 7.41 16 40 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 41 H 0.08 1.21 7.72 -51.93 -0.40 0.81 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -35.52 376.51 -10.40 -45.92 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.66 Total: 9.88 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: -2.35 Total: -35.46 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.70 Total: -46.83 kcal Atomic # 8 Polarization: -63.78 SS G_CDS: -2.22 Total: -66.00 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 71.91 SS G_CDS: -0.53 Total: 71.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.52 -10.40 -45.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439861.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.568 kcal (2) G-P(sol) polarization free energy of solvation -35.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds