Wall clock time and date at job start Tue Mar 31 2020 07:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35879 * 117.00189 * 2 1 4 4 C 1.38760 * 119.93250 * 359.97438 * 3 2 1 5 5 C 1.37876 * 120.14413 * 179.97438 * 4 3 2 6 6 C 1.39613 * 120.00540 * 0.02562 * 5 4 3 7 7 C 1.47767 * 120.06842 * 180.02562 * 6 5 4 8 8 N 1.31202 * 125.13604 * 179.67577 * 7 6 5 9 9 C 1.34893 * 109.84844 * 179.86433 * 8 7 6 10 10 N 1.33230 * 133.06277 * 180.14972 * 9 8 7 11 11 C 1.31530 * 121.54363 * 180.26198 * 10 9 8 12 12 C 1.38592 * 121.42599 * 0.02562 * 11 10 9 13 13 C 1.38491 * 119.46885 * 359.97438 * 12 11 10 14 14 C 1.38847 * 118.22130 * 359.97438 * 13 12 11 15 15 N 1.36809 * 125.12985 * 359.97438 * 7 6 5 16 16 H 0.96991 * 126.50107 * 359.94023 * 15 7 6 17 17 C 1.39633 * 119.86619 * 0.02562 * 6 5 4 18 18 C 1.38219 * 119.85223 * 0.25431 * 17 6 5 19 19 O 1.35995 * 120.00047 * 179.72667 * 18 17 6 20 20 C 1.42900 * 117.00400 * 359.97438 * 19 18 17 21 21 C 1.52996 * 109.47446 * 180.02562 * 20 19 18 22 22 C 1.50697 * 109.47180 * 179.97438 * 21 20 19 23 23 H 1.08001 * 120.00260 * 359.97438 * 22 21 20 24 24 C 1.37885 * 119.99980 * 179.97438 * 22 21 20 25 25 N 1.31516 * 119.99685 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 119.99998 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46952 * 60.00067 * 26 24 22 28 28 H 1.48493 * 109.47278 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47347 * 300.00297 * 26 24 22 30 30 H 1.09004 * 109.47637 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47156 * 300.00489 * 1 2 3 32 32 H 1.08998 * 109.47273 * 59.99892 * 1 2 3 33 33 H 1.08005 * 119.92825 * 0.02562 * 4 3 2 34 34 H 1.08008 * 119.99297 * 180.02562 * 5 4 3 35 35 H 1.07996 * 119.29080 * 180.02562 * 11 10 9 36 36 H 1.07999 * 120.26599 * 179.97438 * 12 11 10 37 37 H 1.07994 * 120.88686 * 180.02562 * 13 12 11 38 38 H 1.08002 * 120.07109 * 179.97438 * 17 6 5 39 39 H 1.09003 * 109.46954 * 299.99976 * 20 19 18 40 40 H 1.09001 * 109.47210 * 59.99415 * 20 19 18 41 41 H 1.08995 * 109.47117 * 300.00171 * 21 20 19 42 42 H 1.09004 * 109.46880 * 59.99961 * 21 20 19 43 43 H 0.96998 * 119.99150 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2888 2.3736 -0.0005 5 6 1.9103 3.6043 0.0000 6 6 3.3042 3.6826 0.0005 7 6 3.9717 5.0009 0.0017 8 7 5.2700 5.1900 0.0083 9 6 5.5405 6.5115 0.0043 10 7 6.6765 7.2075 0.0054 11 6 6.6776 8.5228 0.0056 12 6 5.4955 9.2464 0.0054 13 6 4.2850 8.5738 0.0043 14 6 4.3052 7.1855 0.0029 15 7 3.3290 6.2087 0.0018 16 1 2.3698 6.3518 0.0003 17 6 4.0664 2.5126 0.0000 18 6 3.4375 1.2818 -0.0064 19 8 4.1768 0.1404 -0.0126 20 6 5.5982 0.2881 -0.0126 21 6 6.2545 -1.0939 -0.0206 22 6 7.7534 -0.9382 -0.0213 23 1 8.1939 0.0479 -0.0169 24 6 8.5626 -2.0546 -0.0274 25 7 8.0261 -3.2554 -0.0333 26 14 10.4205 -1.8616 -0.0290 27 1 10.8421 -1.1197 1.1864 28 1 11.0575 -3.2029 -0.0366 29 1 10.8389 -1.1085 -1.2386 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.2104 2.3144 -0.0005 34 1 1.3186 4.5079 0.0000 35 1 7.6199 9.0504 0.0061 36 1 5.5183 10.3262 0.0060 37 1 3.3502 9.1147 0.0037 38 1 5.1449 2.5694 0.0000 39 1 5.9060 0.8412 -0.9000 40 1 5.9070 0.8323 0.8799 41 1 5.9468 -1.6474 0.8665 42 1 5.9457 -1.6377 -0.9134 43 1 8.5954 -4.0407 -0.0380 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095442584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:26 Heat of formation + Delta-G solvation = 36.790104 kcal Electronic energy + Delta-G solvation = -27552.815897 eV Core-core repulsion = 23564.810370 eV Total energy + Delta-G solvation = -3988.005527 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.53472 -40.46260 -38.64398 -38.25586 -36.75835 -33.87249 -33.31971 -31.54868 -31.45753 -30.66873 -29.58975 -28.93955 -27.38075 -25.10782 -24.32553 -23.42084 -22.63639 -22.19501 -21.10182 -20.50162 -18.84212 -18.08140 -17.93967 -17.21546 -16.42933 -16.23215 -16.04517 -15.85566 -15.82279 -15.15230 -15.04303 -14.67657 -14.55709 -14.45468 -14.04807 -13.65530 -13.26188 -12.99768 -12.86829 -12.70125 -12.35974 -12.22068 -11.93657 -11.63932 -11.48168 -11.32346 -11.08421 -10.88736 -10.81296 -10.80523 -10.52593 -9.82195 -9.59581 -9.34522 -9.22258 -9.20393 -9.12611 -8.45099 -8.35409 -7.62946 -6.01879 -4.05862 0.22401 1.03775 1.19363 1.29780 2.37982 2.57975 3.20115 3.37605 3.40099 3.40605 3.43501 3.62170 3.68669 3.81167 4.12984 4.44661 4.48166 4.55101 4.62741 4.68860 4.79362 4.88688 4.94086 5.03597 5.09551 5.17801 5.29641 5.34670 5.38721 5.47528 5.61948 5.75786 5.81327 5.88919 5.97470 6.11511 6.13734 6.19918 6.38306 6.54952 6.74794 6.90056 7.15508 7.41926 7.57568 7.72329 7.86078 7.92533 8.07597 8.32580 8.99867 9.58229 11.09680 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007417 B = 0.003254 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3774.273382 B = 8601.786754 C =12350.298695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.296 6.296 3 C 0.116 3.884 4 C -0.177 4.177 5 C -0.104 4.104 6 C -0.042 4.042 7 C 0.369 3.631 8 N -0.471 5.471 9 C 0.260 3.740 10 N -0.444 5.444 11 C 0.120 3.880 12 C -0.167 4.167 13 C -0.061 4.061 14 C -0.008 4.008 15 N -0.592 5.592 16 H 0.425 0.575 17 C -0.124 4.124 18 C 0.121 3.879 19 O -0.299 6.299 20 C 0.060 3.940 21 C 0.028 3.972 22 C -0.525 4.525 23 H 0.060 0.940 24 C 0.061 3.939 25 N -0.891 5.891 26 Si 0.898 3.102 27 H -0.275 1.275 28 H -0.287 1.287 29 H -0.275 1.275 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.139 0.861 34 H 0.121 0.879 35 H 0.166 0.834 36 H 0.144 0.856 37 H 0.134 0.866 38 H 0.157 0.843 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.313 23.274 0.078 29.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.208 6.208 3 C 0.068 3.932 4 C -0.196 4.196 5 C -0.124 4.124 6 C -0.044 4.044 7 C 0.104 3.896 8 N -0.192 5.192 9 C 0.017 3.983 10 N -0.154 5.154 11 C -0.051 4.051 12 C -0.189 4.189 13 C -0.090 4.090 14 C -0.121 4.121 15 N -0.204 5.204 16 H 0.265 0.735 17 C -0.145 4.145 18 C 0.073 3.927 19 O -0.212 6.212 20 C -0.014 4.014 21 C -0.009 4.009 22 C -0.564 4.564 23 H 0.078 0.922 24 C -0.141 4.141 25 N -0.530 5.530 26 Si 0.726 3.274 27 H -0.200 1.200 28 H -0.212 1.212 29 H -0.200 1.200 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.157 0.843 34 H 0.139 0.861 35 H 0.183 0.817 36 H 0.162 0.838 37 H 0.152 0.848 38 H 0.175 0.825 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.748 21.535 0.083 27.281 hybrid contribution -1.006 1.623 -0.006 1.910 sum -17.753 23.158 0.077 29.181 Atomic orbital electron populations 1.23100 0.78779 1.04189 1.00961 1.86265 1.20794 1.25643 1.88119 1.18554 0.89487 0.85238 0.99874 1.20795 0.99882 0.90887 1.08031 1.20539 0.92184 0.97379 1.02332 1.17183 0.92019 0.87264 1.07982 1.21552 0.86615 0.85866 0.95591 1.70336 1.11400 1.14797 1.22642 1.19427 0.87474 0.89987 1.01457 1.66900 1.27985 1.08332 1.12149 1.22722 0.98551 0.88180 0.95622 1.21927 0.92358 1.01342 1.03244 1.20413 0.99552 0.89337 0.99741 1.19777 0.91438 0.92159 1.08750 1.42962 1.09139 1.05137 1.63201 0.73539 1.21264 1.01902 0.89234 1.02107 1.18296 0.88527 0.87117 0.98757 1.86311 1.21519 1.26486 1.86915 1.23461 0.74265 1.03551 1.00107 1.19100 0.94226 0.88695 0.98901 1.20970 0.90307 0.93021 1.52054 0.92221 1.24976 0.99105 0.95118 0.94935 1.69975 1.35522 0.97561 1.49892 0.86551 0.84851 0.77175 0.78858 1.20027 1.21218 1.20034 0.88074 0.92755 0.92748 0.84309 0.86088 0.81723 0.83825 0.84820 0.82522 0.92743 0.92736 0.95361 0.95367 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 101.05 0.99 1.21 16 2 O -0.30 -4.35 10.27 -34.03 -0.35 -4.69 16 3 C 0.12 1.69 6.71 -38.98 -0.26 1.43 16 4 C -0.18 -1.88 9.02 -39.52 -0.36 -2.24 16 5 C -0.10 -1.05 9.68 -39.20 -0.38 -1.43 16 6 C -0.04 -0.56 5.87 -104.97 -0.62 -1.18 16 7 C 0.37 5.06 7.72 -154.57 -1.19 3.86 16 8 N -0.47 -8.03 10.80 -10.40 -0.11 -8.15 16 9 C 0.26 4.06 8.34 -157.56 -1.31 2.74 16 10 N -0.44 -6.64 10.42 -12.80 -0.13 -6.77 16 11 C 0.12 1.19 11.15 -17.55 -0.20 0.99 16 12 C -0.17 -1.24 10.10 -39.36 -0.40 -1.64 16 13 C -0.06 -0.50 10.19 -39.26 -0.40 -0.90 16 14 C -0.01 -0.10 7.31 -83.88 -0.61 -0.71 16 15 N -0.59 -5.94 6.12 -8.43 -0.05 -6.00 16 16 H 0.42 2.48 8.00 -40.82 -0.33 2.15 16 17 C -0.12 -2.02 8.66 -39.07 -0.34 -2.36 16 18 C 0.12 2.11 6.69 -39.18 -0.26 1.85 16 19 O -0.30 -6.33 9.91 -34.39 -0.34 -6.67 16 20 C 0.06 1.34 4.68 37.16 0.17 1.51 16 21 C 0.03 0.75 5.34 -27.89 -0.15 0.61 16 22 C -0.53 -15.14 9.11 -34.44 -0.31 -15.46 16 23 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 24 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 25 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 26 Si 0.90 22.06 29.54 -169.99 -5.02 17.03 16 27 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 32 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 33 H 0.14 1.00 6.27 -52.48 -0.33 0.67 16 34 H 0.12 0.75 7.09 -52.48 -0.37 0.37 16 35 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.16 2.77 6.03 -52.49 -0.32 2.45 16 39 H 0.05 1.17 7.66 -51.93 -0.40 0.77 16 40 H 0.05 1.17 7.66 -51.93 -0.40 0.77 16 41 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -37.00 370.17 -10.43 -47.43 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.01 Total: -1.35 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -5.72 Total: -10.03 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.44 Total: -47.30 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.69 Total: -11.37 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.00 -10.43 -47.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095442584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.222 kcal (2) G-P(sol) polarization free energy of solvation -37.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds