Wall clock time and date at job start Tue Mar 31 2020 07:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47181 * 2 1 4 4 C 1.34510 * 125.79039 * 90.00180 * 3 2 1 5 5 C 1.41380 * 106.84350 * 180.02562 * 4 3 2 6 6 C 1.34515 * 106.83968 * 359.97438 * 5 4 3 7 7 C 1.50699 * 125.79128 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.87312 * 332.91090 * 7 6 5 9 9 C 1.54319 * 109.88633 * 93.93130 * 7 6 5 10 10 C 1.55546 * 102.76090 * 97.25488 * 9 7 6 11 11 C 1.54903 * 101.59878 * 35.53586 * 10 9 7 12 12 N 1.47022 * 109.88377 * 211.90006 * 7 6 5 13 13 C 1.34778 * 125.65350 * 59.48242 * 12 7 6 14 14 O 1.21585 * 120.00580 * 182.73469 * 13 12 7 15 15 C 1.47646 * 119.99406 * 2.73789 * 13 12 7 16 16 C 1.40009 * 119.89590 * 8.22934 * 15 13 12 17 17 C 1.36320 * 120.10351 * 179.71925 * 16 15 13 18 18 C 1.40884 * 119.89420 * 0.52615 * 17 16 15 19 19 C 1.41110 * 120.10646 * 179.76199 * 18 17 16 20 20 H 1.08000 * 120.00402 * 207.00529 * 19 18 17 21 21 C 1.40226 * 119.99913 * 27.01077 * 19 18 17 22 22 N 1.30649 * 119.99906 * 7.17477 * 21 19 18 23 23 Si 1.86798 * 120.00381 * 187.17420 * 21 19 18 24 24 H 1.48497 * 109.47298 * 89.99871 * 23 21 19 25 25 H 1.48501 * 109.47492 * 210.00287 * 23 21 19 26 26 H 1.48508 * 109.46818 * 330.00104 * 23 21 19 27 27 C 1.40888 * 119.79354 * 359.74601 * 18 17 16 28 28 C 1.36322 * 119.89222 * 359.97438 * 27 18 17 29 29 O 1.34302 * 125.78775 * 269.69416 * 3 2 1 30 30 H 1.09003 * 109.47296 * 60.00026 * 1 2 3 31 31 H 1.08998 * 109.47709 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47261 * 300.00074 * 1 2 3 33 33 H 1.08991 * 109.46943 * 120.00046 * 2 1 3 34 34 H 1.09004 * 109.46640 * 240.00346 * 2 1 3 35 35 H 1.07996 * 126.57677 * 359.96299 * 4 3 2 36 36 H 1.07999 * 126.58515 * 180.02562 * 5 4 3 37 37 H 1.09003 * 110.72296 * 215.59312 * 9 7 6 38 38 H 1.09007 * 110.71361 * 338.86280 * 9 7 6 39 39 H 1.09002 * 111.02630 * 277.44124 * 10 9 7 40 40 H 1.09002 * 110.99904 * 153.62208 * 10 9 7 41 41 H 1.08997 * 110.36561 * 204.11433 * 11 10 9 42 42 H 1.08995 * 110.45886 * 81.84111 * 11 10 9 43 43 H 1.07997 * 119.95188 * 359.97438 * 16 15 13 44 44 H 1.08004 * 120.05371 * 180.29283 * 17 16 15 45 45 H 0.96999 * 120.00183 * 180.02562 * 22 21 19 46 46 H 1.08001 * 120.05892 * 180.02562 * 27 18 17 47 47 H 1.07995 * 119.94953 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2946 2.1625 1.0911 5 6 2.7398 3.4234 0.6320 6 6 2.7235 3.3767 -0.7122 7 6 3.1199 4.4978 -1.6379 8 1 2.9640 5.4576 -1.1454 9 6 4.6026 4.3482 -2.0386 10 6 4.5153 3.6380 -3.4197 11 6 3.2363 4.2755 -4.0174 12 7 2.3225 4.4335 -2.8714 13 6 0.9785 4.5061 -2.9427 14 8 0.4195 4.3916 -4.0163 15 6 0.1851 4.7247 -1.7168 16 6 0.8311 5.0277 -0.5122 17 6 0.1023 5.2360 0.6209 18 6 -1.3023 5.1349 0.5808 19 6 -2.0607 5.3447 1.7521 20 1 -3.0245 4.8702 1.8636 21 6 -1.5631 6.1692 2.7713 22 7 -0.4665 6.8535 2.5810 23 14 -2.4678 6.2892 4.4012 24 1 -1.9537 5.2513 5.3304 25 1 -2.2487 7.6342 4.9912 26 1 -3.9207 6.0776 4.1775 27 6 -1.9475 4.8241 -0.6325 28 6 -1.2107 4.6231 -1.7617 29 8 2.2996 2.1593 -1.0894 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.8932 -0.5138 -0.8901 35 1 2.1850 1.8542 2.1203 36 1 3.0368 4.2628 1.2433 37 1 5.0765 5.3251 -2.1353 38 1 5.1364 3.7291 -1.3174 39 1 4.3954 2.5613 -3.2990 40 1 5.3880 3.8655 -4.0319 41 1 2.7968 3.6149 -4.7648 42 1 3.4643 5.2463 -4.4574 43 1 1.9082 5.1007 -0.4815 44 1 0.6012 5.4743 1.5486 45 1 -0.1221 7.4236 3.2862 46 1 -3.0241 4.7460 -0.6682 47 1 -1.7042 4.3844 -2.6922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095442945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:10 Heat of formation + Delta-G solvation = 27.221417 kcal Electronic energy + Delta-G solvation = -30856.417082 eV Core-core repulsion = 26971.536969 eV Total energy + Delta-G solvation = -3884.880113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.38503 -39.69527 -37.43725 -36.70363 -33.99299 -33.80378 -32.78830 -31.67062 -30.49730 -29.55746 -29.06625 -27.00050 -25.87380 -24.00025 -22.90810 -21.74210 -21.46391 -21.03069 -20.37982 -19.79350 -18.91983 -17.45282 -16.97049 -16.34395 -15.85112 -15.38380 -15.21675 -15.01876 -14.37219 -14.16438 -13.93811 -13.85171 -13.41056 -13.13906 -12.97162 -12.79368 -12.76757 -12.47136 -12.35690 -12.21747 -12.12465 -11.91301 -11.73942 -11.40266 -11.32931 -11.22346 -11.17714 -11.01543 -10.89123 -10.80127 -10.69435 -10.54461 -9.93231 -9.48889 -9.32762 -9.18032 -8.93969 -8.35096 -7.97044 -7.39463 -7.35084 -6.86582 -4.55353 2.10280 2.30035 2.94805 2.97523 3.01078 3.03270 3.15529 3.20758 3.54961 3.79097 3.91117 4.54078 4.60170 4.64061 4.78722 4.97189 5.08651 5.25511 5.34688 5.41370 5.47205 5.54886 5.64110 5.65276 5.67790 5.75080 5.80406 5.87242 5.91481 6.03998 6.05743 6.15388 6.21538 6.30313 6.37759 6.39369 6.41450 6.51859 6.70682 6.85055 6.90687 6.97670 7.14656 7.25363 7.53619 7.59750 7.73223 7.92526 7.95909 8.14292 8.18492 8.51441 8.73327 8.85924 9.03159 10.00615 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.004574 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.941625 B = 6120.210914 C = 6763.186883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.037 4.037 3 C -0.019 4.019 4 C -0.198 4.198 5 C -0.191 4.191 6 C -0.008 4.008 7 C 0.209 3.791 8 H 0.118 0.882 9 C -0.129 4.129 10 C -0.132 4.132 11 C 0.107 3.893 12 N -0.620 5.620 13 C 0.591 3.409 14 O -0.570 6.570 15 C -0.273 4.273 16 C -0.093 4.093 17 C -0.167 4.167 18 C 0.127 3.873 19 C -0.443 4.443 20 H 0.080 0.920 21 C 0.072 3.928 22 N -0.785 5.785 23 Si 0.915 3.085 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.261 1.261 27 C -0.237 4.237 28 C -0.027 4.027 29 O -0.158 6.158 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.123 0.877 44 H 0.129 0.871 45 H 0.283 0.717 46 H 0.095 0.905 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.071 -6.931 -1.119 13.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.074 4.074 3 C -0.069 4.069 4 C -0.217 4.217 5 C -0.211 4.211 6 C -0.059 4.059 7 C 0.105 3.895 8 H 0.135 0.865 9 C -0.167 4.167 10 C -0.170 4.170 11 C -0.016 4.016 12 N -0.354 5.354 13 C 0.389 3.611 14 O -0.452 6.452 15 C -0.277 4.277 16 C -0.111 4.111 17 C -0.187 4.187 18 C 0.124 3.876 19 C -0.472 4.472 20 H 0.098 0.902 21 C -0.147 4.147 22 N -0.409 5.409 23 Si 0.739 3.261 24 H -0.191 1.191 25 H -0.200 1.200 26 H -0.185 1.185 27 C -0.256 4.256 28 C -0.047 4.047 29 O -0.054 6.054 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.140 0.860 44 H 0.147 0.853 45 H 0.094 0.906 46 H 0.113 0.887 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.781 -6.897 -1.891 12.937 hybrid contribution -0.522 0.331 1.101 1.263 sum 10.259 -6.567 -0.790 12.206 Atomic orbital electron populations 1.21782 0.93882 1.01619 1.03485 1.19984 0.96512 0.87834 1.03090 1.22264 1.05037 0.95242 0.84402 1.21361 1.07007 0.94375 0.98940 1.21399 1.07217 0.99178 0.93289 1.22306 1.03825 0.85718 0.94089 1.20545 0.90809 0.93471 0.84721 0.86469 1.22895 0.94009 1.01969 0.97846 1.22841 0.97505 1.00584 0.96044 1.22116 0.89248 1.00202 0.90015 1.48352 1.05484 1.75470 1.06136 1.18424 0.79019 0.74096 0.89583 1.90634 1.69831 1.53415 1.31279 1.18827 0.93345 1.23097 0.92463 1.21897 0.99687 0.96754 0.92757 1.21129 0.93737 1.05996 0.97815 1.17840 0.92455 0.85831 0.91491 1.19805 1.03963 1.23793 0.99622 0.90206 1.26031 0.94643 0.93742 1.00248 1.69704 1.18382 1.19246 1.33610 0.86194 0.80780 0.78439 0.80713 1.19135 1.20039 1.18452 1.20726 0.97771 1.14073 0.93035 1.20315 0.92278 0.95122 0.96959 1.83937 1.64999 1.21865 1.34628 0.92071 0.92214 0.91797 0.89441 0.90828 0.84109 0.83709 0.89660 0.89573 0.90630 0.89934 0.90667 0.91835 0.85991 0.85326 0.90605 0.88665 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.89 37.16 0.37 -1.68 16 2 C -0.04 -0.47 6.47 -27.88 -0.18 -0.65 16 3 C -0.02 -0.31 6.57 -35.63 -0.23 -0.55 16 4 C -0.20 -3.23 10.81 -39.71 -0.43 -3.66 16 5 C -0.19 -3.18 8.42 -39.70 -0.33 -3.51 16 6 C -0.01 -0.13 3.46 -35.62 -0.12 -0.25 16 7 C 0.21 3.22 2.61 -68.11 -0.18 3.04 16 8 H 0.12 1.83 6.04 -51.93 -0.31 1.51 16 9 C -0.13 -1.42 6.51 -24.69 -0.16 -1.58 16 10 C -0.13 -1.44 7.10 -24.37 -0.17 -1.61 16 11 C 0.11 1.54 6.92 -2.53 -0.02 1.52 16 12 N -0.62 -11.25 3.03 -167.13 -0.51 -11.76 16 13 C 0.59 13.46 7.60 -12.42 -0.09 13.37 16 14 O -0.57 -14.40 16.60 5.29 0.09 -14.31 16 15 C -0.27 -6.54 5.67 -104.73 -0.59 -7.14 16 16 C -0.09 -2.11 6.24 -39.61 -0.25 -2.35 16 17 C -0.17 -4.14 8.34 -39.27 -0.33 -4.46 16 18 C 0.13 3.30 5.59 -106.80 -0.60 2.70 16 19 C -0.44 -11.26 9.07 -37.75 -0.34 -11.60 16 20 H 0.08 1.95 7.86 -52.49 -0.41 1.54 16 21 C 0.07 1.71 5.33 -17.31 -0.09 1.62 16 22 N -0.78 -18.95 10.53 55.56 0.58 -18.37 16 23 Si 0.91 17.73 29.57 -169.99 -5.03 12.70 16 24 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 25 H -0.28 -5.23 7.11 56.52 0.40 -4.82 16 26 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 27 C -0.24 -5.93 9.73 -39.27 -0.38 -6.31 16 28 C -0.03 -0.68 9.52 -39.60 -0.38 -1.06 16 29 O -0.16 -2.90 10.59 5.70 0.06 -2.84 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.14 2.05 8.06 -52.49 -0.42 1.62 16 36 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.88 7.82 -51.93 -0.41 0.47 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 1.16 8.01 -51.93 -0.42 0.74 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.12 2.42 1.70 -54.68 -0.09 2.32 16 44 H 0.13 3.23 5.92 -52.48 -0.31 2.92 16 45 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 46 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 47 H 0.10 2.33 7.65 -52.49 -0.40 1.93 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -30.80 378.25 -10.18 -40.98 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -6.56 Total: 12.06 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -4.52 Total: -24.17 kcal Atomic # 7 Polarization: -30.20 SS G_CDS: 0.08 Total: -30.12 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.15 Total: -17.15 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.80 -10.18 -40.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095442945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.203 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds