Wall clock time and date at job start Tue Mar 31 2020 05:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30766 * 1 3 3 Si 1.86800 * 119.99887 * 2 1 4 4 H 1.48491 * 109.47310 * 270.00396 * 3 2 1 5 5 H 1.48505 * 109.46580 * 30.00361 * 3 2 1 6 6 H 1.48501 * 109.47084 * 149.99809 * 3 2 1 7 7 C 1.40102 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99842 * 197.30028 * 7 2 1 9 9 C 1.40536 * 120.00404 * 17.30578 * 7 2 1 10 10 C 1.40943 * 120.64305 * 24.69828 * 9 7 2 11 11 C 1.36214 * 119.97485 * 180.28131 * 10 9 7 12 12 C 1.38975 * 121.41222 * 359.70898 * 11 10 9 13 13 C 1.37629 * 121.34757 * 359.97438 * 12 11 10 14 14 C 1.39955 * 119.89465 * 0.02562 * 13 12 11 15 15 C 1.43199 * 120.67601 * 180.02562 * 14 13 12 16 16 C 4.94733 * 122.22203 * 156.82418 * 2 1 3 17 17 C 6.00120 * 129.20016 * 147.63159 * 2 1 3 18 18 C 1.39968 * 120.16735 * 85.68056 * 17 16 15 19 19 C 1.37843 * 119.86763 * 179.97438 * 18 17 16 20 20 C 1.38423 * 120.20873 * 359.74598 * 19 18 17 21 21 C 1.50703 * 119.83068 * 180.27941 * 20 19 18 22 22 C 1.52998 * 109.46680 * 265.22888 * 21 20 19 23 23 C 1.50696 * 109.47108 * 180.02562 * 22 21 20 24 24 O 1.20824 * 120.00061 * 359.97438 * 23 22 21 25 25 O 1.34231 * 120.00308 * 179.97438 * 23 22 21 26 26 C 1.38634 * 120.33405 * 0.50965 * 20 19 18 27 27 F 1.35093 * 119.93350 * 179.76763 * 26 20 19 28 28 C 1.38102 * 120.12604 * 359.48748 * 26 20 19 29 29 H 0.96991 * 120.00299 * 359.97438 * 1 2 3 30 30 H 1.07994 * 120.00920 * 359.97438 * 10 9 7 31 31 H 1.07994 * 119.28816 * 179.72753 * 11 10 9 32 32 H 1.08001 * 119.32338 * 180.02562 * 12 11 10 33 33 H 1.08006 * 120.05484 * 179.97438 * 13 12 11 34 34 H 1.07994 * 120.06561 * 359.97438 * 18 17 16 35 35 H 1.08005 * 119.89751 * 179.97438 * 19 18 17 36 36 H 1.08998 * 109.47266 * 25.22437 * 21 20 19 37 37 H 1.08995 * 109.46946 * 145.23023 * 21 20 19 38 38 H 1.09002 * 109.47373 * 299.99852 * 22 21 20 39 39 H 1.08995 * 109.47320 * 60.00364 * 22 21 20 40 40 H 0.96697 * 117.00095 * 179.97438 * 25 23 22 41 41 H 1.08001 * 120.10355 * 180.27408 * 28 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4890 2.0465 -1.4000 5 1 1.4390 2.6526 0.7002 6 1 3.5392 1.4402 0.7001 7 6 2.0082 -1.2133 -0.0005 8 1 3.0515 -1.2346 0.2776 9 6 1.3533 -2.4027 -0.3631 10 6 0.2165 -2.3718 -1.1958 11 6 -0.4111 -3.5325 -1.5340 12 6 0.0478 -4.7631 -1.0797 13 6 1.1561 -4.8592 -0.2694 14 6 1.8436 -3.7015 0.1124 15 6 2.9990 -3.7821 0.9545 16 6 3.9456 -3.8476 1.6472 17 6 5.1006 -3.9280 2.4897 18 6 6.3699 -4.1077 1.9280 19 6 7.4777 -4.1837 2.7448 20 6 7.3390 -4.0776 4.1180 21 6 8.5566 -4.1556 5.0026 22 6 8.7395 -5.5933 5.4928 23 6 9.9566 -5.6713 6.3779 24 8 10.6110 -4.6788 6.5941 25 8 10.3139 -6.8433 6.9261 26 6 6.0853 -3.9048 4.6838 27 9 5.9588 -3.8069 6.0253 28 6 4.9661 -3.8267 3.8785 29 1 -0.4850 0.8399 0.0004 30 1 -0.1597 -1.4278 -1.5614 31 1 -1.2838 -3.4955 -2.1691 32 1 -0.4756 -5.6624 -1.3691 33 1 1.4943 -5.8265 0.0719 34 1 6.4812 -4.1866 0.8567 35 1 8.4573 -4.3227 2.3118 36 1 9.4368 -3.8498 4.4371 37 1 8.4266 -3.4936 5.8587 38 1 7.8593 -5.8992 6.0583 39 1 8.8695 -6.2553 4.6367 40 1 11.1021 -6.8438 7.4863 41 1 3.9901 -3.6876 4.3194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095930190.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:40 Heat of formation + Delta-G solvation = -66.418466 kcal Electronic energy + Delta-G solvation = -26009.310535 eV Core-core repulsion = 21926.502403 eV Total energy + Delta-G solvation = -4082.808132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.89861 -40.59376 -39.08368 -37.48586 -36.56322 -34.81627 -33.99487 -32.79136 -30.72677 -30.33867 -29.79570 -28.53117 -25.90342 -25.24638 -22.83254 -22.45667 -21.37113 -21.00516 -20.79194 -18.48274 -18.28689 -17.48377 -17.00745 -16.78239 -16.24609 -16.09061 -15.57307 -15.53487 -15.28191 -14.57738 -14.17027 -13.97617 -13.77526 -13.68517 -13.57541 -13.20657 -12.85326 -12.81781 -12.44278 -12.25860 -12.03475 -11.91129 -11.81762 -11.52434 -11.38219 -11.30999 -11.17397 -11.02512 -10.91407 -10.66993 -10.43298 -9.94692 -9.79886 -9.66666 -9.44713 -8.80955 -8.05267 -7.67995 -7.34710 -7.04555 -4.61344 0.92463 1.25014 1.86831 2.17187 2.68794 2.69391 2.93540 2.98171 3.10649 3.22790 3.72443 3.91942 4.22813 4.29491 4.42174 4.47558 4.58176 4.62135 4.81189 4.92929 5.08270 5.17343 5.24365 5.35005 5.51507 5.57565 5.67792 5.80524 6.02650 6.05213 6.07284 6.15546 6.22214 6.29983 6.43483 6.59832 6.71013 6.77523 6.93620 7.01781 7.10160 7.34321 7.53812 7.66935 7.80270 7.91386 7.98594 8.30815 8.45278 8.57800 8.69899 9.82087 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014671 B = 0.002214 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.077010 B =12643.687546 C =13881.022807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.430 4.430 8 H 0.086 0.914 9 C 0.142 3.858 10 C -0.167 4.167 11 C -0.085 4.085 12 C -0.254 4.254 13 C -0.044 4.044 14 C -0.174 4.174 15 C 0.026 3.974 16 C -0.276 4.276 17 C 0.103 3.897 18 C -0.117 4.117 19 C -0.083 4.083 20 C -0.136 4.136 21 C -0.064 4.064 22 C -0.110 4.110 23 C 0.480 3.520 24 O -0.516 6.516 25 O -0.519 6.519 26 C 0.105 3.895 27 F -0.140 7.140 28 C -0.143 4.143 29 H 0.288 0.712 30 H 0.122 0.878 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.409 0.591 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.872 -7.442 7.467 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.457 4.457 8 H 0.104 0.896 9 C 0.139 3.861 10 C -0.186 4.186 11 C -0.103 4.103 12 C -0.273 4.273 13 C -0.062 4.062 14 C -0.175 4.175 15 C 0.026 3.974 16 C -0.276 4.276 17 C 0.103 3.897 18 C -0.136 4.136 19 C -0.101 4.101 20 C -0.137 4.137 21 C -0.101 4.101 22 C -0.148 4.148 23 C 0.323 3.677 24 O -0.404 6.404 25 O -0.331 6.331 26 C 0.086 3.914 27 F -0.118 7.118 28 C -0.162 4.162 29 H 0.099 0.901 30 H 0.140 0.860 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.268 0.732 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 13.471 -6.988 7.354 16.863 hybrid contribution 0.612 0.762 0.679 1.191 sum 14.083 -6.225 8.033 17.367 Atomic orbital electron populations 1.69784 1.07865 1.30267 1.31248 1.26114 0.94850 1.02005 0.91790 0.86182 0.80742 0.79559 0.79793 1.18744 1.19828 1.18077 1.19679 0.98390 0.90942 1.36659 0.89595 1.18569 0.90250 0.89952 0.87327 1.21016 0.98921 0.97314 1.01349 1.20451 0.98056 0.93170 0.98647 1.20114 1.01694 0.96392 1.09139 1.20534 0.94454 0.95216 0.96020 1.17042 0.98017 0.94074 1.08416 1.19463 0.91906 0.92741 0.93279 1.18312 0.98021 1.06691 1.04575 1.15681 0.89303 0.95152 0.89594 1.21434 0.91044 1.00502 1.00578 1.20782 0.98993 0.98835 0.91490 1.19724 0.92904 1.06239 0.94847 1.20267 0.95800 0.94654 0.99392 1.21403 0.94210 1.00017 0.99151 1.23577 0.85923 0.80119 0.78106 1.90737 1.53782 1.36993 1.58916 1.84552 1.49464 1.36703 1.62332 1.17316 0.93692 1.03405 0.76957 1.91472 1.96721 1.93708 1.29938 1.21357 0.98384 1.03416 0.93030 0.90061 0.85978 0.89197 0.89063 0.88822 0.84913 0.84883 0.89498 0.89759 0.87331 0.87125 0.73178 0.84359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.49 10.95 55.56 0.61 -17.88 16 2 C 0.07 1.75 5.16 -17.31 -0.09 1.67 16 3 Si 0.91 17.73 29.60 -169.99 -5.03 12.70 16 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.43 -10.93 8.57 -38.02 -0.33 -11.26 16 8 H 0.09 2.19 7.38 -52.49 -0.39 1.80 16 9 C 0.14 3.66 5.74 -104.57 -0.60 3.06 16 10 C -0.17 -4.10 8.65 -39.29 -0.34 -4.44 16 11 C -0.08 -1.88 9.91 -40.04 -0.40 -2.28 16 12 C -0.25 -5.45 9.97 -39.53 -0.39 -5.85 16 13 C -0.04 -0.98 9.78 -39.16 -0.38 -1.36 16 14 C -0.17 -4.24 5.97 -103.90 -0.62 -4.86 16 15 C 0.03 0.60 12.25 -38.83 -0.48 0.13 16 16 C -0.28 -5.70 13.25 -38.83 -0.51 -6.22 16 17 C 0.10 1.73 5.75 -106.71 -0.61 1.11 16 18 C -0.12 -1.61 9.77 -39.08 -0.38 -1.99 16 19 C -0.08 -0.91 9.65 -39.66 -0.38 -1.29 16 20 C -0.14 -1.55 5.15 -104.41 -0.54 -2.09 16 21 C -0.06 -0.61 4.40 -27.88 -0.12 -0.73 16 22 C -0.11 -0.86 5.79 -27.89 -0.16 -1.02 16 23 C 0.48 4.21 8.33 36.00 0.30 4.51 16 24 O -0.52 -6.14 16.74 -18.75 -0.31 -6.46 16 25 O -0.52 -3.42 13.42 -39.26 -0.53 -3.95 16 26 C 0.11 1.42 7.23 -39.49 -0.29 1.13 16 27 F -0.14 -1.88 16.55 2.25 0.04 -1.84 16 28 C -0.14 -2.20 9.75 -39.01 -0.38 -2.58 16 29 H 0.29 6.21 8.29 -40.82 -0.34 5.87 16 30 H 0.12 3.03 6.18 -52.49 -0.32 2.70 16 31 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.09 1.85 8.06 -52.48 -0.42 1.42 16 34 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 36 H 0.09 0.76 8.01 -51.93 -0.42 0.34 16 37 H 0.08 0.89 7.73 -51.93 -0.40 0.49 16 38 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.41 1.03 9.10 45.56 0.41 1.45 16 41 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 374.97 15.07 5.65 5.65 Total: -1.00 -29.26 374.97 -9.91 -39.17 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -3.63 Total: 6.96 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: -6.70 Total: -34.35 kcal Atomic # 7 Polarization: -18.49 SS G_CDS: 0.61 Total: -17.88 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.84 Total: -10.41 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.26 -9.91 -39.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095930190.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.247 kcal (2) G-P(sol) polarization free energy of solvation -29.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds