Wall clock time and date at job start Tue Mar 31 2020 05:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39751 * 120.08512 * 326.27181 * 3 2 1 5 5 C 1.38044 * 120.14493 * 180.02562 * 4 3 2 6 6 C 1.38103 * 120.30376 * 359.69669 * 5 4 3 7 7 C 1.39670 * 120.15764 * 0.55865 * 6 5 4 8 8 C 1.47838 * 120.07461 * 179.74725 * 7 6 5 9 9 O 1.21570 * 119.99965 * 179.72220 * 8 7 6 10 10 N 1.34771 * 119.99464 * 359.71745 * 8 7 6 11 11 C 1.40061 * 119.99570 * 185.53605 * 10 8 7 12 12 C 1.38669 * 120.10424 * 24.83223 * 11 10 8 13 13 C 1.38246 * 120.00781 * 179.72348 * 12 11 10 14 14 C 1.38304 * 120.21263 * 0.27931 * 13 12 11 15 15 C 1.38195 * 120.20569 * 359.97438 * 14 13 12 16 16 C 1.38780 * 119.98930 * 359.97438 * 15 14 13 17 17 S 1.76205 * 120.10891 * 180.02562 * 16 15 14 18 18 C 1.81400 * 102.99430 * 0.02562 * 17 16 15 19 19 C 1.50703 * 109.46772 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00067 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99887 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99743 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99971 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47206 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47235 * 120.00222 * 23 21 19 26 26 H 1.48505 * 109.47273 * 240.00102 * 23 21 19 27 27 C 1.39346 * 119.85556 * 359.46562 * 7 6 5 28 28 H 1.08004 * 119.92791 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.84927 * 179.97438 * 5 4 3 30 30 H 1.08001 * 119.92105 * 180.30399 * 6 5 4 31 31 H 0.96995 * 120.00536 * 5.53521 * 10 8 7 32 32 H 1.07996 * 119.99390 * 0.02562 * 12 11 10 33 33 H 1.07999 * 119.89182 * 180.25501 * 13 12 11 34 34 H 1.07999 * 119.89260 * 179.97438 * 14 13 12 35 35 H 1.08001 * 120.00667 * 180.02562 * 15 14 13 36 36 H 1.09005 * 109.47201 * 299.99833 * 18 17 16 37 37 H 1.09002 * 109.47454 * 60.00386 * 18 17 16 38 38 H 0.97006 * 119.99658 * 179.97438 * 22 21 19 39 39 H 1.07993 * 120.15506 * 180.23307 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -1.0048 0.6714 5 6 4.6494 -1.0050 0.6727 6 6 5.3471 -0.0169 0.0062 7 6 4.6593 0.9970 -0.6644 8 6 5.4080 2.0570 -1.3726 9 8 4.8081 2.9360 -1.9601 10 7 6.7557 2.0488 -1.3666 11 6 7.4650 3.1133 -1.9370 12 6 6.8779 4.3655 -2.0379 13 6 7.5818 5.4163 -2.5961 14 6 8.8700 5.2221 -3.0606 15 6 9.4617 3.9766 -2.9692 16 6 8.7631 2.9161 -2.4094 17 16 9.5148 1.3269 -2.2907 18 6 11.1549 1.5961 -3.0177 19 6 11.9348 0.3069 -2.9887 20 1 11.4884 -0.5851 -2.5749 21 6 13.2181 0.2661 -3.4916 22 7 13.7615 1.3523 -3.9960 23 14 14.1851 -1.3316 -3.4551 24 1 13.3550 -2.3987 -2.8406 25 1 14.5469 -1.7231 -4.8412 26 1 15.4220 -1.1435 -2.6551 27 6 3.2659 1.0040 -0.6696 28 1 2.7295 -1.7828 1.1912 29 1 5.1863 -1.7841 1.1934 30 1 6.4270 -0.0259 0.0071 31 1 7.2345 1.3057 -0.9672 32 1 5.8723 4.5211 -1.6759 33 1 7.1243 6.3917 -2.6700 34 1 9.4151 6.0465 -3.4961 35 1 10.4680 3.8287 -3.3326 36 1 11.0446 1.9314 -4.0490 37 1 11.6867 2.3549 -2.4437 38 1 14.6644 1.3236 -4.3495 39 1 2.7293 1.7835 -1.1898 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:45 Heat of formation + Delta-G solvation = 45.609215 kcal Electronic energy + Delta-G solvation = -24191.847876 eV Core-core repulsion = 20576.570462 eV Total energy + Delta-G solvation = -3615.277414 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.083 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.94419 -39.48533 -38.05958 -36.74932 -34.92229 -33.33172 -32.18141 -31.72623 -30.82073 -29.27077 -28.66571 -24.83913 -24.32030 -23.42979 -22.82738 -22.00293 -20.92011 -19.32997 -18.03488 -16.99522 -16.89171 -16.58040 -16.32522 -15.66713 -15.43768 -15.07894 -14.92686 -14.45577 -14.42824 -14.28782 -14.06375 -13.54226 -13.39915 -13.18877 -13.14074 -13.04988 -12.64644 -12.45570 -12.34342 -12.26442 -11.84268 -11.79995 -11.31437 -11.02768 -10.81644 -10.53744 -10.18486 -9.88840 -9.75267 -9.57733 -9.51567 -9.30468 -9.24672 -8.71291 -8.08908 -6.68642 -6.34304 -4.40413 0.10959 0.50746 1.46210 1.62877 2.22211 2.25852 2.29197 2.85447 2.89604 3.15920 3.23928 3.27781 3.41149 3.46472 3.51790 4.03439 4.19248 4.23040 4.33032 4.51370 4.55598 4.84784 5.02428 5.03587 5.20965 5.28109 5.35271 5.49133 5.64085 5.67441 5.70207 5.75665 5.76807 6.11570 6.15085 6.37678 6.47788 6.62417 6.79549 6.86773 6.90346 7.06219 7.20303 7.31125 7.58201 7.80687 7.91469 8.60673 9.24091 10.76791 Molecular weight = 338.08amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.002749 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.310899 B =10182.713079 C =12305.452137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.256 3.744 3 C -0.037 4.037 4 C -0.045 4.045 5 C -0.122 4.122 6 C -0.053 4.053 7 C -0.131 4.131 8 C 0.558 3.442 9 O -0.516 6.516 10 N -0.652 5.652 11 C 0.147 3.853 12 C -0.116 4.116 13 C -0.122 4.122 14 C -0.115 4.115 15 C -0.114 4.114 16 C -0.094 4.094 17 S -0.173 6.173 18 C 0.079 3.921 19 C -0.520 4.520 20 H 0.069 0.931 21 C 0.068 3.932 22 N -0.888 5.888 23 Si 0.908 3.092 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.010 4.010 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.139 0.861 31 H 0.414 0.586 32 H 0.144 0.856 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.136 0.864 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.267 0.733 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.980 -0.186 9.112 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.060 4.060 3 C -0.041 4.041 4 C -0.066 4.066 5 C -0.140 4.140 6 C -0.073 4.073 7 C -0.135 4.135 8 C 0.347 3.653 9 O -0.393 6.393 10 N -0.296 5.296 11 C 0.047 3.953 12 C -0.137 4.137 13 C -0.143 4.143 14 C -0.136 4.136 15 C -0.139 4.139 16 C -0.209 4.209 17 S 0.073 5.927 18 C -0.068 4.068 19 C -0.559 4.559 20 H 0.087 0.913 21 C -0.137 4.137 22 N -0.525 5.525 23 Si 0.735 3.265 24 H -0.194 1.194 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.031 4.031 28 H 0.157 0.843 29 H 0.162 0.838 30 H 0.157 0.843 31 H 0.252 0.748 32 H 0.161 0.839 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.154 0.846 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.387 -0.667 9.086 19.629 hybrid contribution 1.943 0.045 -0.451 1.995 sum -15.445 -0.622 8.635 17.706 Atomic orbital electron populations 1.81279 1.11940 1.07421 1.08083 1.25551 0.92473 0.94014 0.93929 1.15858 0.84598 0.99041 1.04573 1.21425 0.94502 0.95866 0.94801 1.21106 0.93470 0.99335 1.00075 1.21714 1.00941 0.91992 0.92632 1.19746 0.93698 0.97432 1.02596 1.18170 0.81693 0.85291 0.80188 1.90760 1.68537 1.37277 1.42770 1.43361 1.05942 1.22907 1.57383 1.17165 0.90680 0.87558 0.99911 1.21208 1.01116 0.90385 1.01003 1.20956 0.94640 0.98492 1.00240 1.21060 0.95309 0.96846 1.00385 1.21237 1.00563 0.92146 0.99956 1.21806 0.96372 0.99773 1.02959 1.84948 1.21051 1.08502 1.78151 1.21381 0.85635 1.01682 0.98100 1.20634 0.98643 0.94468 1.42194 0.91276 1.24957 0.97046 0.97241 0.94420 1.69949 1.15547 1.27753 1.39256 0.86267 0.79674 0.82536 0.78019 1.19371 1.20625 1.20619 1.21272 0.92666 0.95838 0.93367 0.84310 0.83761 0.84337 0.74781 0.83865 0.86039 0.86033 0.84628 0.93642 0.93658 0.92304 0.83422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.78 18.54 41.84 0.78 -4.00 16 2 C 0.26 2.35 15.32 -22.47 -0.34 2.01 16 3 C -0.04 -0.27 5.73 -106.99 -0.61 -0.89 16 4 C -0.05 -0.24 9.75 -39.09 -0.38 -0.62 16 5 C -0.12 -0.62 10.02 -39.70 -0.40 -1.02 16 6 C -0.05 -0.37 9.53 -39.10 -0.37 -0.75 16 7 C -0.13 -1.22 5.87 -105.02 -0.62 -1.84 16 8 C 0.56 7.08 7.58 -12.34 -0.09 6.99 16 9 O -0.52 -7.87 13.51 5.30 0.07 -7.80 16 10 N -0.65 -8.73 5.11 -10.56 -0.05 -8.79 16 11 C 0.15 2.36 6.44 -83.45 -0.54 1.82 16 12 C -0.12 -1.76 8.72 -39.42 -0.34 -2.10 16 13 C -0.12 -1.70 10.04 -39.55 -0.40 -2.09 16 14 C -0.12 -1.71 10.04 -39.57 -0.40 -2.10 16 15 C -0.11 -2.00 9.36 -39.40 -0.37 -2.37 16 16 C -0.09 -1.68 6.12 -38.89 -0.24 -1.91 16 17 S -0.17 -3.36 20.56 -107.50 -2.21 -5.56 16 18 C 0.08 1.87 4.09 36.01 0.15 2.02 16 19 C -0.52 -13.52 9.13 -34.44 -0.31 -13.84 16 20 H 0.07 1.77 7.71 -52.49 -0.40 1.37 16 21 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -24.35 13.29 55.43 0.74 -23.61 16 23 Si 0.91 20.09 29.54 -169.99 -5.02 15.06 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 C -0.01 -0.09 9.30 -38.75 -0.36 -0.45 16 28 H 0.14 0.44 8.06 -52.48 -0.42 0.01 16 29 H 0.14 0.40 8.06 -52.49 -0.42 -0.03 16 30 H 0.14 0.83 6.40 -52.49 -0.34 0.50 16 31 H 0.41 4.88 5.69 -40.82 -0.23 4.64 16 32 H 0.14 2.13 5.79 -52.49 -0.30 1.82 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 35 H 0.14 2.52 5.88 -52.49 -0.31 2.22 16 36 H 0.05 1.14 7.75 -51.92 -0.40 0.74 16 37 H 0.05 1.12 7.75 -51.92 -0.40 0.72 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.15 1.30 7.64 -52.49 -0.40 0.90 16 LS Contribution 359.50 15.07 5.42 5.42 Total: -1.00 -30.57 359.50 -9.63 -40.20 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -3.62 Total: 4.53 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -5.72 Total: -15.44 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 1.46 Total: -36.40 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.07 Total: -7.80 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -2.21 Total: -5.56 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.57 -9.63 -40.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.808 kcal (2) G-P(sol) polarization free energy of solvation -30.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds