Wall clock time and date at job start Tue Mar 31 2020 07:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86803 * 119.99899 * 2 1 4 4 H 1.48495 * 109.47332 * 267.16830 * 3 2 1 5 5 H 1.48500 * 109.46858 * 27.16804 * 3 2 1 6 6 H 1.48500 * 109.47085 * 147.16615 * 3 2 1 7 7 C 1.39930 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00389 * 348.10490 * 7 2 1 9 9 C 1.41439 * 119.99776 * 168.10113 * 7 2 1 10 10 C 1.40783 * 120.17984 * 323.96079 * 9 7 2 11 11 C 1.37706 * 120.03992 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.41571 * 359.69952 * 11 10 9 13 13 C 1.39884 * 120.35369 * 0.56374 * 12 11 10 14 14 C 1.47885 * 120.02573 * 179.74223 * 13 12 11 15 15 O 1.21541 * 120.00145 * 203.17659 * 14 13 12 16 16 N 1.34781 * 119.99840 * 23.17376 * 14 13 12 17 17 C 1.46503 * 120.00051 * 1.16401 * 16 14 13 18 18 C 1.50703 * 109.46713 * 259.88672 * 17 16 14 19 19 O 1.20823 * 120.00335 * 359.97438 * 18 17 16 20 20 O 1.34231 * 119.99528 * 180.02562 * 18 17 16 21 21 C 1.46504 * 119.99764 * 181.16363 * 16 14 13 22 22 C 1.50693 * 109.47070 * 269.99522 * 21 16 14 23 23 C 1.38233 * 120.00615 * 269.73289 * 22 21 16 24 24 C 1.38234 * 120.00251 * 179.76796 * 23 22 21 25 25 C 1.38236 * 119.99991 * 0.48411 * 24 23 22 26 26 C 1.38244 * 119.99863 * 359.78576 * 25 24 23 27 27 C 1.38229 * 119.99775 * 359.96138 * 26 25 24 28 28 C 1.39026 * 119.94846 * 359.45694 * 13 12 11 29 29 H 0.97001 * 119.99805 * 359.97438 * 1 2 3 30 30 H 1.08004 * 119.97872 * 0.02562 * 10 9 7 31 31 H 1.08005 * 119.79248 * 179.97438 * 11 10 9 32 32 H 1.07999 * 119.82483 * 180.27798 * 12 11 10 33 33 H 1.08998 * 109.47168 * 19.88235 * 17 16 14 34 34 H 1.08997 * 109.47100 * 139.88646 * 17 16 14 35 35 H 0.96701 * 116.99920 * 180.02562 * 20 18 17 36 36 H 1.09001 * 109.46573 * 150.00020 * 21 16 14 37 37 H 1.08993 * 109.47230 * 30.00067 * 21 16 14 38 38 H 1.08004 * 119.99653 * 359.97438 * 23 22 21 39 39 H 1.08004 * 120.00086 * 180.24699 * 24 23 22 40 40 H 1.08001 * 120.00067 * 179.77076 * 25 24 23 41 41 H 1.07997 * 119.99648 * 179.97438 * 26 25 24 42 42 H 1.08004 * 120.00071 * 179.97438 * 27 26 25 43 43 H 1.08007 * 120.20478 * 180.23109 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.5497 2.0119 -1.3983 5 1 1.4110 2.6692 0.6393 6 1 3.5086 1.4583 0.7591 7 6 2.0079 -1.2118 -0.0005 8 1 1.4854 -2.1372 0.1918 9 6 3.3995 -1.2249 -0.2531 10 6 3.9588 -0.3260 -1.1812 11 6 5.3140 -0.3416 -1.4252 12 6 6.1357 -1.2331 -0.7585 13 6 5.5973 -2.1373 0.1630 14 6 6.4814 -3.0909 0.8673 15 8 6.0243 -4.1207 1.3230 16 7 7.7942 -2.8179 1.0039 17 6 8.3405 -1.5648 0.4770 18 6 9.0123 -1.8268 -0.8463 19 8 9.0330 -2.9455 -1.3023 20 8 9.5884 -0.8175 -1.5180 21 6 8.6749 -3.7743 1.6792 22 6 8.7153 -3.4655 3.1536 23 6 9.6682 -2.5970 3.6521 24 6 9.7022 -2.3101 5.0039 25 6 8.7895 -2.8993 5.8587 26 6 7.8400 -3.7722 5.3610 27 6 7.8028 -4.0550 4.0085 28 6 4.2311 -2.1349 0.4207 29 1 -0.4850 0.8401 0.0004 30 1 3.3247 0.3761 -1.7020 31 1 5.7388 0.3495 -2.1383 32 1 7.1979 -1.2340 -0.9540 33 1 7.5327 -0.8461 0.3383 34 1 9.0687 -1.1616 1.1806 35 1 10.0065 -1.0343 -2.3625 36 1 9.6800 -3.6981 1.2643 37 1 8.2959 -4.7852 1.5299 38 1 10.3841 -2.1401 2.9849 39 1 10.4442 -1.6284 5.3928 40 1 8.8183 -2.6780 6.9154 41 1 7.1272 -4.2329 6.0289 42 1 7.0612 -4.7373 3.6196 43 1 3.8114 -2.8287 1.1341 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095969940.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:13 Heat of formation + Delta-G solvation = -43.207148 kcal Electronic energy + Delta-G solvation = -29090.339218 eV Core-core repulsion = 25066.571998 eV Total energy + Delta-G solvation = -4023.767220 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.00853 -39.62424 -38.93178 -37.44577 -36.31307 -35.41302 -33.80367 -32.33611 -30.93037 -30.57989 -30.10298 -28.71206 -26.34917 -25.24987 -22.94656 -22.66001 -21.96403 -21.31489 -20.89563 -19.34096 -18.27622 -17.75347 -17.17914 -16.83449 -16.49665 -16.10919 -15.79557 -15.48001 -15.28589 -14.94841 -14.57253 -14.32624 -13.84290 -13.73937 -13.44167 -13.12380 -13.05671 -12.92095 -12.81142 -12.66278 -12.54062 -12.02748 -11.88139 -11.58561 -11.40773 -11.36408 -11.14971 -11.00239 -10.76901 -10.71907 -10.49270 -10.04528 -9.81390 -9.52689 -9.24721 -8.95260 -8.86066 -8.74042 -7.99041 -7.78877 -7.00320 -4.62786 1.22328 1.37614 1.77370 2.06996 2.40289 2.67787 3.01826 3.12557 3.14622 3.20991 3.54344 3.83632 3.88734 4.37835 4.64704 4.72696 4.89892 4.91800 4.95216 5.10570 5.15713 5.16718 5.30370 5.39763 5.44319 5.61500 5.70717 5.72438 5.85928 5.94091 6.02735 6.27125 6.38331 6.39111 6.42592 6.48662 6.53344 6.58701 6.59859 6.90225 6.96110 7.11515 7.22268 7.36331 7.44179 7.67777 7.79298 7.85190 8.23677 8.43265 8.47576 8.65970 10.02203 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010788 B = 0.003903 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.745215 B = 7172.563402 C = 8531.696910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.082 3.918 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.247 1.247 7 C -0.445 4.445 8 H 0.095 0.905 9 C 0.086 3.914 10 C -0.218 4.218 11 C -0.079 4.079 12 C -0.245 4.245 13 C -0.106 4.106 14 C 0.573 3.427 15 O -0.529 6.529 16 N -0.591 5.591 17 C 0.086 3.914 18 C 0.459 3.541 19 O -0.502 6.502 20 O -0.517 6.517 21 C 0.158 3.842 22 C -0.105 4.105 23 C -0.110 4.110 24 C -0.126 4.126 25 C -0.119 4.119 26 C -0.122 4.122 27 C -0.091 4.091 28 C -0.131 4.131 29 H 0.287 0.713 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.168 0.832 34 H 0.109 0.891 35 H 0.409 0.591 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.173 0.950 5.012 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.170 1.170 7 C -0.474 4.474 8 H 0.113 0.887 9 C 0.083 3.917 10 C -0.238 4.238 11 C -0.097 4.097 12 C -0.264 4.264 13 C -0.109 4.109 14 C 0.365 3.635 15 O -0.406 6.406 16 N -0.324 5.324 17 C -0.039 4.039 18 C 0.300 3.700 19 O -0.389 6.389 20 O -0.328 6.328 21 C 0.036 3.964 22 C -0.106 4.106 23 C -0.129 4.129 24 C -0.144 4.144 25 C -0.137 4.137 26 C -0.140 4.140 27 C -0.110 4.110 28 C -0.151 4.151 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.185 0.815 34 H 0.127 0.873 35 H 0.268 0.732 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.149 0.851 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 18.437 0.236 5.513 19.245 hybrid contribution 0.597 0.679 -0.718 1.154 sum 19.034 0.914 4.794 19.650 Atomic orbital electron populations 1.69646 1.07962 1.30335 1.35423 1.26125 0.94840 1.01515 0.91143 0.86333 0.80588 0.79707 0.79577 1.19208 1.21608 1.17024 1.19508 0.90848 0.95841 1.41164 0.88716 1.17744 0.93593 0.90766 0.89559 1.21387 0.94858 1.05156 1.02355 1.20580 0.93722 0.97598 0.97808 1.21132 0.98278 1.02159 1.04839 1.19389 0.94104 0.97373 1.00020 1.18846 0.80689 0.86058 0.77884 1.90689 1.74233 1.26665 1.48980 1.47477 1.08214 1.19736 1.56988 1.22123 1.02406 0.89988 0.89421 1.24136 0.75524 0.82658 0.87717 1.90750 1.55533 1.24409 1.68204 1.84545 1.68282 1.41825 1.38165 1.20313 0.94394 0.94364 0.87303 1.20267 0.96362 0.98123 0.95886 1.21018 0.98490 0.97821 0.95523 1.21081 0.99421 1.00314 0.93577 1.21165 0.95638 0.97286 0.99631 1.21204 0.98685 0.98538 0.95585 1.21290 0.97553 0.99019 0.93110 1.21318 0.90450 1.02289 1.01077 0.90290 0.87294 0.87972 0.87286 0.81508 0.87300 0.73227 0.90054 0.88597 0.86402 0.86220 0.86292 0.86052 0.85148 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.11 13.93 55.55 0.77 -20.33 16 2 C 0.08 2.09 5.46 -17.34 -0.09 2.00 16 3 Si 0.91 19.82 24.58 -169.99 -4.18 15.64 16 4 H -0.27 -5.54 6.46 56.52 0.36 -5.17 16 5 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.25 -5.42 7.05 56.52 0.40 -5.03 16 7 C -0.45 -11.74 9.58 -37.73 -0.36 -12.10 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 C 0.09 2.12 5.00 -106.87 -0.53 1.58 16 10 C -0.22 -4.91 7.20 -38.81 -0.28 -5.19 16 11 C -0.08 -1.55 10.01 -39.73 -0.40 -1.95 16 12 C -0.24 -4.66 7.53 -38.92 -0.29 -4.95 16 13 C -0.11 -2.22 5.61 -105.04 -0.59 -2.81 16 14 C 0.57 11.23 7.52 -12.31 -0.09 11.13 16 15 O -0.53 -11.49 15.63 5.33 0.08 -11.40 16 16 N -0.59 -9.14 2.02 -177.54 -0.36 -9.50 16 17 C 0.09 1.09 5.47 -5.19 -0.03 1.06 16 18 C 0.46 5.88 6.20 36.01 0.22 6.10 16 19 O -0.50 -8.08 16.99 -18.75 -0.32 -8.40 16 20 O -0.52 -4.95 13.42 -39.26 -0.53 -5.48 16 21 C 0.16 2.13 5.29 -5.19 -0.03 2.10 16 22 C -0.11 -1.34 5.46 -104.63 -0.57 -1.91 16 23 C -0.11 -1.18 9.70 -39.58 -0.38 -1.56 16 24 C -0.13 -1.27 10.05 -39.58 -0.40 -1.66 16 25 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 26 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 27 C -0.09 -1.24 9.70 -39.58 -0.38 -1.62 16 28 C -0.13 -3.08 9.33 -38.44 -0.36 -3.43 16 29 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 30 H 0.11 2.43 4.89 -52.48 -0.26 2.17 16 31 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 32 H 0.11 1.77 2.60 -52.49 -0.14 1.63 16 33 H 0.17 2.32 4.22 -51.94 -0.22 2.10 16 34 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.41 2.28 9.10 45.56 0.41 2.69 16 36 H 0.08 0.93 8.01 -51.93 -0.42 0.51 16 37 H 0.10 1.41 7.38 -51.93 -0.38 1.03 16 38 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 39 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.13 1.93 7.53 -52.48 -0.39 1.53 16 43 H 0.12 2.76 7.82 -52.48 -0.41 2.35 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -31.27 362.71 -8.36 -39.63 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -3.94 Total: 11.09 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -5.37 Total: -16.71 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 0.42 Total: -29.83 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.76 Total: -25.28 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.18 Total: 15.64 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.27 -8.36 -39.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095969940.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.579 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds