Wall clock time and date at job start Tue Mar 31 2020 05:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35718 * 116.99828 * 2 1 4 4 C 1.39009 * 119.90747 * 180.02562 * 3 2 1 5 5 C 1.37691 * 120.09249 * 179.97438 * 4 3 2 6 6 C 1.39776 * 119.90520 * 0.02562 * 5 4 3 7 7 C 1.47618 * 120.08916 * 179.97438 * 6 5 4 8 8 O 1.21694 * 120.00660 * 330.15355 * 7 6 5 9 9 C 1.46985 * 119.99976 * 150.14717 * 7 6 5 10 10 C 1.36263 * 127.14916 * 353.75191 * 9 7 6 11 11 O 1.33759 * 109.82424 * 180.02562 * 10 9 7 12 12 C 1.34980 * 111.38115 * 0.02693 * 11 10 9 13 13 C 1.39030 * 132.99191 * 180.02562 * 12 11 10 14 14 C 1.37729 * 120.07168 * 179.97438 * 13 12 11 15 15 C 1.39275 * 120.58099 * 359.97438 * 14 13 12 16 16 O 1.35796 * 119.97573 * 179.97438 * 15 14 13 17 17 C 1.34820 * 116.99689 * 353.57659 * 16 15 14 18 18 H 1.08006 * 120.00345 * 354.25585 * 17 16 15 19 19 C 1.38642 * 119.99987 * 174.25495 * 17 16 15 20 20 N 1.31565 * 120.00057 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00085 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47208 * 90.00237 * 21 19 17 23 23 H 1.48509 * 109.47081 * 209.99817 * 21 19 17 24 24 H 1.48503 * 109.47111 * 329.99691 * 21 19 17 25 25 C 1.38494 * 120.05127 * 359.97438 * 15 14 13 26 26 C 1.39019 * 119.56958 * 0.02562 * 25 15 14 27 27 C 1.39777 * 119.81816 * 0.27399 * 6 5 4 28 28 C 1.37689 * 119.90620 * 359.46883 * 27 6 5 29 29 H 1.09003 * 109.47521 * 59.99873 * 1 2 3 30 30 H 1.08998 * 109.47170 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47187 * 299.99748 * 1 2 3 32 32 H 1.07999 * 119.95647 * 359.97438 * 4 3 2 33 33 H 1.07995 * 120.05024 * 179.97438 * 5 4 3 34 34 H 1.07993 * 125.08500 * 0.02562 * 10 9 7 35 35 H 1.07999 * 119.96714 * 359.97438 * 13 12 11 36 36 H 1.07998 * 119.71303 * 179.97438 * 14 13 12 37 37 H 0.96999 * 120.00245 * 180.02562 * 20 19 17 38 38 H 1.07998 * 120.21299 * 179.74766 * 25 15 14 39 39 H 1.07997 * 120.04236 * 179.70370 * 27 6 5 40 40 H 1.08005 * 119.95061 * 180.25429 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4334 1.2798 -0.0005 5 6 4.0624 2.5046 -0.0011 6 6 3.3030 3.6781 -0.0005 7 6 3.9731 4.9934 -0.0005 8 8 5.0640 5.1206 0.5235 9 6 3.3228 6.1495 -0.6337 10 6 2.1694 6.1496 -1.3592 11 8 1.8942 7.3912 -1.7736 12 6 2.8310 8.2685 -1.3556 13 6 2.9878 9.6397 -1.5232 14 6 4.0710 10.2836 -0.9674 15 6 5.0178 9.5730 -0.2336 16 8 6.0814 10.2202 0.3086 17 6 6.2337 11.5212 -0.0103 18 1 5.5826 11.9780 -0.7411 19 6 7.2262 12.2729 0.5997 20 7 8.0190 11.7167 1.4902 21 14 7.4368 14.0758 0.1583 22 1 6.5990 14.9072 1.0595 23 1 8.8628 14.4601 0.3138 24 1 7.0162 14.2932 -1.2492 25 6 4.8755 8.2068 -0.0566 26 6 3.7837 7.5526 -0.6158 27 6 1.9072 3.6027 0.0063 28 6 1.2861 2.3738 0.0015 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.0195 0.3727 -0.0005 33 1 5.1410 2.5587 -0.0011 34 1 1.5675 5.2777 -1.5682 35 1 2.2594 10.2006 -2.0900 36 1 4.1873 11.3489 -1.1016 37 1 8.7131 12.2427 1.9173 38 1 5.6102 7.6525 0.5084 39 1 1.3169 4.5070 0.0116 40 1 0.2077 2.3148 0.0027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096184216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:11 Heat of formation + Delta-G solvation = -33.880340 kcal Electronic energy + Delta-G solvation = -27046.100118 eV Core-core repulsion = 22952.330156 eV Total energy + Delta-G solvation = -4093.769962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.10614 -40.56564 -39.02162 -38.63137 -37.19357 -35.70229 -32.87678 -32.30337 -31.47062 -30.75144 -29.23390 -28.51021 -27.72395 -25.35418 -24.62355 -23.07507 -22.80749 -21.86143 -21.44678 -19.44357 -18.64422 -18.31518 -17.26929 -16.83969 -16.62379 -16.22623 -16.15250 -15.88291 -15.77597 -14.81036 -14.69578 -14.38341 -14.29805 -14.07552 -13.83131 -13.60995 -13.56681 -13.30644 -13.07874 -12.88944 -12.51289 -12.36413 -12.23182 -12.05258 -11.60065 -11.45356 -11.25692 -11.20304 -10.78502 -10.68392 -10.48170 -9.76685 -9.71609 -9.42813 -9.40815 -8.86291 -8.58367 -7.83607 -7.22888 -6.48565 -4.07786 0.51714 0.98627 1.18131 2.02086 2.20882 2.81165 3.00686 3.06744 3.11425 3.11643 3.16814 3.61318 3.90955 3.99736 4.33698 4.40513 4.48587 4.62306 4.65375 4.70237 4.90790 4.99002 5.01675 5.04509 5.06868 5.21120 5.26521 5.34976 5.55123 5.64519 5.81938 5.87590 5.94039 5.96484 5.99930 6.18626 6.31251 6.32829 6.60219 6.82059 6.93044 6.98127 7.07854 7.12503 7.32293 7.62787 7.74358 7.93492 8.95225 9.63397 10.68764 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.025934 B = 0.002223 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.404718 B =12592.908602 C =13520.833288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.148 3.852 4 C -0.158 4.158 5 C -0.026 4.026 6 C -0.181 4.181 7 C 0.463 3.537 8 O -0.443 6.443 9 C -0.263 4.263 10 C 0.066 3.934 11 O -0.184 6.184 12 C -0.045 4.045 13 C -0.059 4.059 14 C -0.189 4.189 15 C 0.149 3.851 16 O -0.168 6.168 17 C -0.396 4.396 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.857 5.857 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.159 4.159 26 C -0.046 4.046 27 C -0.051 4.051 28 C -0.216 4.216 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.211 0.789 35 H 0.123 0.877 36 H 0.144 0.856 37 H 0.272 0.728 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.576 -18.569 -5.325 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.102 3.898 4 C -0.176 4.176 5 C -0.044 4.044 6 C -0.183 4.183 7 C 0.342 3.658 8 O -0.319 6.319 9 C -0.266 4.266 10 C -0.003 4.003 11 O -0.084 6.084 12 C -0.090 4.090 13 C -0.077 4.077 14 C -0.208 4.208 15 C 0.095 3.905 16 O -0.072 6.072 17 C -0.472 4.472 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.491 5.491 21 Si 0.767 3.233 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.179 4.179 26 C -0.047 4.047 27 C -0.069 4.069 28 C -0.235 4.235 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.227 0.773 35 H 0.141 0.859 36 H 0.162 0.838 37 H 0.081 0.919 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.739 -18.571 -4.901 24.832 hybrid contribution -0.274 0.903 -0.156 0.956 sum -16.013 -17.668 -5.057 24.375 Atomic orbital electron populations 1.23125 0.78001 1.04221 1.01679 1.86050 1.21747 1.26937 1.88026 1.19304 0.92424 0.84202 0.93903 1.20414 0.91271 0.98752 1.07212 1.21142 1.00621 0.90098 0.92582 1.20359 0.94186 0.94800 1.08918 1.19336 0.84874 0.85483 0.76098 1.90674 1.19602 1.85831 1.35817 1.21297 1.00134 0.94491 1.10657 1.24605 0.95367 0.86217 0.94139 1.83717 1.45390 1.15885 1.63418 1.19213 0.91518 0.91759 1.06523 1.19565 0.98573 0.88417 1.01182 1.21127 0.95274 1.01149 1.03274 1.19180 0.87667 0.91432 0.92243 1.84043 1.37399 1.24769 1.60945 1.21319 1.18335 0.83380 1.24149 0.88995 1.25320 0.95347 1.00221 0.95608 1.70049 1.17637 1.36807 1.24572 0.85694 0.78164 0.80397 0.79067 1.19822 1.20198 1.19119 1.19442 0.99666 0.91565 1.07186 1.18928 0.95913 0.90482 0.99337 1.21298 0.93350 0.97697 0.94556 1.21198 1.00330 0.91985 1.09953 0.92318 0.88056 0.92338 0.84474 0.84099 0.77310 0.85944 0.83842 0.91852 0.85130 0.84550 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.63 10.48 -18.86 -0.20 -2.82 16 3 C 0.15 1.35 6.70 -39.01 -0.26 1.09 16 4 C -0.16 -1.52 9.97 -39.50 -0.39 -1.92 16 5 C -0.03 -0.29 9.59 -39.21 -0.38 -0.67 16 6 C -0.18 -2.23 5.72 -104.92 -0.60 -2.83 16 7 C 0.46 7.48 6.91 -32.21 -0.22 7.26 16 8 O -0.44 -8.76 16.67 5.19 0.09 -8.68 16 9 C -0.26 -4.36 6.15 -103.20 -0.63 -5.00 16 10 C 0.07 0.85 10.29 30.02 0.31 1.16 16 11 O -0.18 -2.86 10.53 5.25 0.06 -2.81 16 12 C -0.05 -0.84 7.39 -38.53 -0.28 -1.12 16 13 C -0.06 -1.07 10.05 -39.47 -0.40 -1.47 16 14 C -0.19 -3.98 9.10 -39.38 -0.36 -4.34 16 15 C 0.15 3.65 6.64 -39.10 -0.26 3.39 16 16 O -0.17 -4.83 9.75 -0.07 0.00 -4.83 16 17 C -0.40 -10.87 9.43 30.88 0.29 -10.58 16 18 H 0.09 2.28 5.30 -52.48 -0.28 2.00 16 19 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 20 N -0.86 -25.09 13.67 55.48 0.76 -24.33 16 21 Si 0.94 20.17 29.55 -169.99 -5.02 15.15 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 C -0.16 -3.70 9.83 -39.20 -0.39 -4.08 16 26 C -0.05 -0.93 6.28 -104.99 -0.66 -1.59 16 27 C -0.05 -0.48 8.17 -39.21 -0.32 -0.80 16 28 C -0.22 -1.75 9.01 -39.50 -0.36 -2.11 16 29 H 0.06 0.20 7.65 -51.93 -0.40 -0.20 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 32 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.14 1.53 7.92 -52.49 -0.42 1.11 16 34 H 0.21 1.65 5.86 -52.49 -0.31 1.35 16 35 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 36 H 0.14 2.89 5.70 -52.49 -0.30 2.59 16 37 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.13 3.18 7.55 -52.49 -0.40 2.78 16 39 H 0.14 1.07 5.72 -52.49 -0.30 0.77 16 40 H 0.13 0.72 6.28 -52.48 -0.33 0.40 16 LS Contribution 350.73 15.07 5.29 5.29 Total: -1.00 -34.27 350.73 -6.58 -40.85 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -3.52 Total: 3.68 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -4.02 Total: -21.50 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.76 Total: -24.33 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.06 Total: -19.13 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.27 -6.58 -40.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096184216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.966 kcal (2) G-P(sol) polarization free energy of solvation -34.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds