Wall clock time and date at job start Tue Mar 31 2020 07:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46841 * 2 1 4 4 N 1.46502 * 109.46997 * 119.99741 * 2 1 3 5 5 C 1.46500 * 119.99989 * 304.79607 * 4 2 1 6 6 C 1.50698 * 109.47251 * 270.00204 * 5 4 2 7 7 H 1.08004 * 120.00221 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99768 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00072 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99776 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47139 * 59.99444 * 10 8 6 12 12 H 1.48496 * 109.46915 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46914 * 299.99424 * 10 8 6 14 14 C 1.34777 * 119.99529 * 124.80084 * 4 2 1 15 15 O 1.21721 * 119.99754 * 174.92903 * 14 4 2 16 16 C 1.46239 * 120.00206 * 354.92147 * 14 4 2 17 17 C 1.34998 * 119.99938 * 186.34501 * 16 14 4 18 18 C 1.46952 * 119.99898 * 9.67212 * 17 16 14 19 19 C 1.39925 * 120.21299 * 44.90824 * 18 17 16 20 20 C 1.37751 * 119.87850 * 179.97438 * 19 18 17 21 21 C 1.38570 * 120.32148 * 359.97438 * 20 19 18 22 22 C 1.38128 * 120.43559 * 0.02562 * 21 20 19 23 23 C 1.38613 * 120.10947 * 359.97438 * 22 21 20 24 24 O 1.35686 * 120.16050 * 180.02562 * 23 22 21 25 25 C 1.42902 * 116.99756 * 359.97438 * 24 23 22 26 26 F 1.39903 * 109.47136 * 299.99961 * 25 24 23 27 27 F 1.39893 * 109.47373 * 60.00089 * 25 24 23 28 28 H 1.09004 * 109.47026 * 300.00253 * 1 2 3 29 29 H 1.08996 * 109.47119 * 59.99897 * 1 2 3 30 30 H 1.08995 * 109.47333 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47331 * 240.00400 * 2 1 3 32 32 H 1.09002 * 109.47071 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47120 * 299.99538 * 3 2 1 34 34 H 1.08994 * 109.47561 * 59.99971 * 3 2 1 35 35 H 1.08998 * 109.47293 * 30.00621 * 5 4 2 36 36 H 1.08999 * 109.46939 * 149.99881 * 5 4 2 37 37 H 0.97004 * 120.00165 * 180.02562 * 9 8 6 38 38 H 1.08000 * 119.99919 * 6.35417 * 16 14 4 39 39 H 1.07993 * 120.00427 * 189.66602 * 17 16 14 40 40 H 1.07995 * 120.06031 * 359.95779 * 19 18 17 41 41 H 1.08008 * 119.84044 * 180.02562 * 20 19 18 42 42 H 1.07993 * 119.78257 * 180.27936 * 21 20 19 43 43 H 1.07998 * 119.94851 * 180.02562 * 22 21 20 44 44 H 1.09002 * 109.46816 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5799 -0.2542 2.5242 6 6 2.5295 0.7921 3.0481 7 1 3.3749 1.1014 2.4514 8 6 2.3191 1.3544 4.2893 9 7 1.2894 0.9781 5.0157 10 14 3.4958 2.6519 4.9385 11 1 3.5088 3.8149 4.0151 12 1 3.0514 3.0941 6.2846 13 1 4.8625 2.0785 5.0315 14 6 2.8710 -1.7273 1.0749 15 8 3.3488 -2.2418 2.0691 16 6 3.2220 -2.2340 -0.2512 17 6 3.9724 -3.3498 -0.3706 18 6 4.2583 -4.1730 0.8127 19 6 3.2369 -4.4852 1.7167 20 6 3.5124 -5.2579 2.8233 21 6 4.7967 -5.7284 3.0459 22 6 5.8148 -5.4282 2.1621 23 6 5.5577 -4.6521 1.0427 24 8 6.5569 -4.3570 0.1735 25 6 7.8529 -4.8790 0.4736 26 9 8.2769 -4.3900 1.7140 27 9 7.7941 -6.2760 0.5184 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5137 -0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 0.5770 0.1671 2.4555 36 1 1.5696 -1.1077 3.2021 37 1 1.1411 1.3740 5.8888 38 1 2.8810 -1.7154 -1.1351 39 1 4.3626 -3.6376 -1.3355 40 1 2.2345 -4.1209 1.5473 41 1 2.7235 -5.4989 3.5205 42 1 5.0020 -6.3372 3.9139 43 1 6.8127 -5.7993 2.3430 44 1 8.5571 -4.5692 -0.2986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096256424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:57 Heat of formation + Delta-G solvation = -119.443056 kcal Electronic energy + Delta-G solvation = -30257.260729 eV Core-core repulsion = 25811.791237 eV Total energy + Delta-G solvation = -4445.469492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.44424 -47.43385 -40.07530 -39.07814 -37.28284 -35.93528 -33.60699 -32.71296 -30.82566 -30.09011 -29.61381 -27.33761 -26.72848 -26.10523 -24.14046 -22.71014 -22.08550 -21.55132 -20.28326 -18.95797 -18.24562 -18.00358 -17.49252 -17.05316 -16.41070 -16.03647 -15.58768 -14.86404 -14.80791 -14.63310 -14.24469 -14.15187 -14.08815 -13.80435 -13.71048 -13.47361 -13.44392 -12.96097 -12.92771 -12.71630 -12.50059 -12.28792 -12.18269 -11.73985 -11.67287 -11.47561 -11.22169 -11.12792 -10.92491 -10.85801 -10.76980 -10.49774 -10.32637 -10.02578 -9.61476 -9.51445 -8.94268 -8.37509 -8.20745 -7.74848 -7.51650 -5.99377 -4.01899 1.03807 1.68496 2.16430 2.53236 3.34279 3.36110 3.38778 3.42747 3.94399 4.03259 4.12214 4.17636 4.49312 4.53744 4.82070 5.03023 5.08538 5.19334 5.27367 5.35103 5.41956 5.56407 5.60586 5.64324 5.70390 5.83200 6.03394 6.12675 6.17456 6.23781 6.29491 6.37854 6.39094 6.55379 6.62753 6.65346 6.81311 6.86032 6.98097 7.19278 7.29629 7.49524 7.62742 7.97714 8.30133 8.50689 8.96912 9.17863 9.61993 11.08572 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011561 B = 0.003669 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.390379 B = 7630.061673 C = 8468.821986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.130 3.870 3 C -0.159 4.159 4 N -0.585 5.585 5 C 0.247 3.753 6 C -0.515 4.515 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.897 5.897 10 Si 0.893 3.107 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.525 3.475 15 O -0.526 6.526 16 C -0.202 4.202 17 C -0.037 4.037 18 C -0.075 4.075 19 C 0.006 3.994 20 C -0.153 4.153 21 C -0.074 4.074 22 C -0.207 4.207 23 C 0.115 3.885 24 O -0.319 6.319 25 C 0.411 3.589 26 F -0.198 7.198 27 F -0.202 7.202 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.260 -11.474 -13.957 19.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 C -0.217 4.217 4 N -0.316 5.316 5 C 0.128 3.872 6 C -0.554 4.554 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.536 5.536 10 Si 0.721 3.279 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.314 3.686 15 O -0.405 6.405 16 C -0.222 4.222 17 C -0.056 4.056 18 C -0.075 4.075 19 C -0.012 4.012 20 C -0.172 4.172 21 C -0.092 4.092 22 C -0.225 4.225 23 C 0.072 3.928 24 O -0.236 6.236 25 C 0.321 3.679 26 F -0.180 7.180 27 F -0.184 7.184 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 6.382 -11.578 -13.359 18.795 hybrid contribution 0.872 0.890 0.713 1.435 sum 7.253 -10.688 -12.647 18.077 Atomic orbital electron populations 1.22151 0.95500 1.01808 1.02472 1.21076 0.94158 0.93924 0.88240 1.22171 1.01226 0.95974 1.02325 1.48329 1.43989 1.30532 1.08706 1.19230 0.95077 0.95711 0.77203 1.21391 1.10938 1.21141 1.01954 0.92507 1.24901 0.95473 0.97143 0.96548 1.69913 1.28490 1.43274 1.11940 0.86640 0.81568 0.81737 0.77968 1.20327 1.21282 1.20302 1.18234 0.80040 0.81231 0.89117 1.90852 1.51917 1.58475 1.39299 1.23369 1.02405 0.98367 0.98104 1.22041 0.93851 0.93049 0.96702 1.18129 0.90238 1.01223 0.97950 1.20925 0.98109 0.90799 0.91398 1.20923 0.96964 1.00748 0.98536 1.20898 0.92436 0.98159 0.97733 1.21213 1.00787 1.04132 0.96401 1.18834 0.86982 0.96967 0.90028 1.86515 1.16658 1.71660 1.48811 1.23305 0.85740 0.74198 0.84657 1.93114 1.89899 1.87418 1.47519 1.93080 1.96360 1.32201 1.96748 0.91178 0.92356 0.92874 0.90476 0.92928 0.93288 0.90064 0.94756 0.94200 0.92828 0.85188 0.85246 0.85820 0.85918 0.86052 0.85571 0.80571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.07 37.16 0.34 -2.01 16 2 C 0.13 2.11 3.16 -67.93 -0.21 1.90 16 3 C -0.16 -2.63 8.60 37.16 0.32 -2.31 16 4 N -0.58 -12.13 2.39 -169.17 -0.40 -12.53 16 5 C 0.25 6.29 4.68 -5.19 -0.02 6.26 16 6 C -0.52 -14.38 7.85 -34.44 -0.27 -14.65 16 7 H 0.06 1.61 7.59 -52.48 -0.40 1.21 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 9 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 10 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 14 C 0.53 10.83 6.69 -13.05 -0.09 10.74 16 15 O -0.53 -12.76 11.67 5.17 0.06 -12.70 16 16 C -0.20 -3.15 9.24 -37.52 -0.35 -3.50 16 17 C -0.04 -0.54 9.36 -37.21 -0.35 -0.89 16 18 C -0.07 -1.26 4.55 -104.93 -0.48 -1.73 16 19 C 0.01 0.10 6.56 -39.13 -0.26 -0.15 16 20 C -0.15 -2.48 10.02 -39.64 -0.40 -2.87 16 21 C -0.07 -1.12 10.03 -39.50 -0.40 -1.52 16 22 C -0.21 -3.22 8.25 -39.48 -0.33 -3.55 16 23 C 0.11 1.86 6.50 -38.64 -0.25 1.61 16 24 O -0.32 -4.35 9.89 -18.76 -0.19 -4.54 16 25 C 0.41 4.19 5.98 101.05 0.60 4.79 16 26 F -0.20 -2.53 15.59 2.25 0.04 -2.49 16 27 F -0.20 -2.21 15.58 2.25 0.04 -2.17 16 28 H 0.07 1.18 6.52 -51.93 -0.34 0.84 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.03 5.18 -51.93 -0.27 0.76 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 35 H 0.03 0.88 6.19 -51.93 -0.32 0.56 16 36 H 0.04 1.15 7.50 -51.93 -0.39 0.77 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.13 1.61 5.80 -52.49 -0.30 1.31 16 39 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.12 2.14 7.05 -52.49 -0.37 1.77 16 41 H 0.12 1.76 8.06 -52.48 -0.42 1.33 16 42 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 43 H 0.13 1.80 5.10 -52.49 -0.27 1.53 16 44 H 0.18 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 366.30 15.07 5.52 5.52 Total: -1.00 -34.10 366.30 -6.99 -41.09 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.54 Total: 2.75 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.23 Total: -6.27 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.33 Total: -38.31 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.13 Total: -17.24 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.07 Total: -4.66 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.10 -6.99 -41.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096256424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.350 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds