Wall clock time and date at job start Tue Mar 31 2020 07:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99923 * 2 1 4 4 C 1.53000 * 109.47224 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46870 * 64.99698 * 4 3 2 6 6 C 1.46499 * 120.00210 * 274.99817 * 5 4 3 7 7 C 1.50697 * 109.46937 * 275.00338 * 6 5 4 8 8 H 1.07994 * 120.00428 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99679 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00131 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99808 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47246 * 89.99652 * 11 9 7 13 13 H 1.48495 * 109.46906 * 209.99699 * 11 9 7 14 14 H 1.48500 * 109.47200 * 329.99607 * 11 9 7 15 15 S 1.65606 * 119.99906 * 95.00161 * 5 4 3 16 16 O 1.42105 * 106.40236 * 156.45867 * 15 5 4 17 17 O 1.42095 * 106.40179 * 23.53680 * 15 5 4 18 18 C 1.76195 * 107.21793 * 269.99350 * 15 5 4 19 19 C 1.32568 * 119.99726 * 117.79874 * 18 15 5 20 20 C 1.47815 * 119.99802 * 17.60609 * 19 18 15 21 21 C 1.39543 * 120.13755 * 225.40516 * 20 19 18 22 22 C 1.37977 * 119.85404 * 179.72179 * 21 20 19 23 23 C 1.38348 * 120.13669 * 0.57027 * 22 21 20 24 24 C 1.50706 * 119.85024 * 179.69843 * 23 22 21 25 25 C 1.38340 * 120.29124 * 359.68732 * 23 22 21 26 26 C 1.37977 * 120.13948 * 0.03514 * 25 23 22 27 27 H 1.09000 * 109.47047 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47083 * 299.99834 * 1 2 3 29 29 H 1.08999 * 109.47274 * 60.00396 * 1 2 3 30 30 H 1.08994 * 109.47675 * 59.99731 * 3 2 1 31 31 H 1.09005 * 109.46662 * 299.99654 * 3 2 1 32 32 H 1.08989 * 109.47143 * 304.99976 * 4 3 2 33 33 H 1.08999 * 109.46925 * 184.99117 * 4 3 2 34 34 H 1.08998 * 109.46832 * 34.99954 * 6 5 4 35 35 H 1.08998 * 109.47332 * 155.00482 * 6 5 4 36 36 H 0.96997 * 120.00070 * 180.02562 * 10 9 7 37 37 H 1.08003 * 120.00774 * 297.80523 * 18 15 5 38 38 H 1.08003 * 120.00355 * 197.60071 * 19 18 15 39 39 H 1.07996 * 120.07266 * 359.97438 * 21 20 19 40 40 H 1.07992 * 119.92867 * 180.27820 * 22 21 20 41 41 H 1.09000 * 109.47215 * 269.97827 * 24 23 22 42 42 H 1.08998 * 109.47256 * 29.98583 * 24 23 22 43 43 H 1.09001 * 109.46542 * 149.98251 * 24 23 22 44 44 H 1.07998 * 119.93231 * 180.02562 * 25 23 22 45 45 H 1.07999 * 120.06908 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0015 -0.8955 -1.3757 7 6 5.3001 -1.4248 -0.8238 8 1 6.0336 -0.7423 -0.4208 9 6 5.5520 -2.7803 -0.8344 10 7 4.6589 -3.6114 -1.3256 11 14 7.1614 -3.4365 -0.1496 12 1 7.0009 -3.7293 1.2974 13 1 7.5341 -4.6815 -0.8682 14 1 8.2286 -2.4204 -0.3336 15 16 4.4473 1.5121 -2.5245 16 8 5.3033 0.7102 -3.3268 17 8 4.8441 2.7593 -1.9711 18 6 3.0119 1.8323 -3.4948 19 6 2.5798 3.0761 -3.6486 20 6 3.4788 4.2123 -3.3556 21 6 3.0154 5.2987 -2.6124 22 6 3.8612 6.3535 -2.3374 23 6 5.1626 6.3410 -2.8067 24 6 6.0789 7.4996 -2.5082 25 6 5.6265 5.2694 -3.5485 26 6 4.7925 4.2057 -3.8256 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8508 0.5686 0.8426 33 1 3.9784 2.1766 0.0901 34 1 3.1685 -1.3221 -0.8170 35 1 3.9138 -1.1718 -2.4264 36 1 4.8361 -4.5650 -1.3327 37 1 2.4839 1.0153 -3.9641 38 1 1.5711 3.2593 -3.9882 39 1 1.9982 5.3119 -2.2499 40 1 3.5052 7.1928 -1.7585 41 1 5.9932 8.2439 -3.2999 42 1 5.7984 7.9486 -1.5554 43 1 7.1079 7.1443 -2.4535 44 1 6.6436 5.2654 -3.9117 45 1 5.1557 3.3700 -4.4052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096258902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:44 Heat of formation + Delta-G solvation = -59.051835 kcal Electronic energy + Delta-G solvation = -28448.531179 eV Core-core repulsion = 24559.520833 eV Total energy + Delta-G solvation = -3889.010345 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.42503 -37.79575 -36.51714 -35.33250 -35.22817 -34.61937 -32.46539 -31.34071 -30.84574 -29.49429 -26.78011 -26.64313 -25.66827 -22.99335 -22.76379 -22.35493 -21.63732 -20.40058 -18.06913 -17.38474 -16.62724 -16.30177 -15.95971 -15.73851 -15.58650 -15.26747 -15.06329 -14.70484 -14.43664 -14.33246 -14.16815 -13.74289 -13.41676 -13.39312 -12.81862 -12.57661 -12.37538 -12.30335 -12.12782 -11.98303 -11.86724 -11.53040 -11.28372 -11.16889 -11.13004 -11.04540 -10.98190 -10.81127 -10.61765 -10.50672 -10.27909 -9.94414 -9.89746 -9.65001 -9.35695 -8.72906 -8.32971 -8.18875 -7.96477 -5.94950 -3.97806 0.68564 1.20674 1.55620 1.94077 3.38179 3.44011 3.49724 3.70709 3.86426 4.11857 4.41118 4.53558 4.56497 4.81901 4.89534 4.98043 5.06012 5.22953 5.30344 5.33558 5.40312 5.41280 5.48794 5.50593 5.52882 5.57615 5.62167 5.69785 5.73922 5.77071 5.87509 5.92898 6.06733 6.12768 6.19101 6.33880 6.47793 6.54515 6.59628 6.64355 7.06293 7.45193 7.47966 7.52791 7.79463 8.02870 8.33634 9.03814 9.65647 11.13833 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.004181 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.453913 B = 6695.158610 C = 7923.277088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.041 3.959 4 C 0.123 3.877 5 N -0.972 5.972 6 C 0.254 3.746 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.273 1.273 15 S 2.664 3.336 16 O -0.949 6.949 17 O -0.964 6.964 18 C -0.743 4.743 19 C 0.038 3.962 20 C -0.090 4.090 21 C -0.086 4.086 22 C -0.128 4.128 23 C -0.073 4.073 24 C -0.115 4.115 25 C -0.114 4.114 26 C -0.056 4.056 27 H 0.084 0.916 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.033 0.967 36 H 0.262 0.738 37 H 0.161 0.839 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.123 0.877 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.368 19.246 -1.379 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.038 4.038 4 C -0.004 4.004 5 N -0.811 5.811 6 C 0.133 3.867 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.198 1.198 15 S 2.753 3.247 16 O -0.939 6.939 17 O -0.954 6.954 18 C -0.846 4.846 19 C 0.018 3.982 20 C -0.091 4.091 21 C -0.104 4.104 22 C -0.146 4.146 23 C -0.073 4.073 24 C -0.171 4.171 25 C -0.133 4.133 26 C -0.075 4.075 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.179 0.821 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.141 0.859 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.481 19.138 -1.610 20.270 hybrid contribution -0.432 -0.618 0.123 0.764 sum -6.913 18.520 -1.487 19.824 Atomic orbital electron populations 1.22712 0.82461 1.02536 0.98995 1.88146 1.18332 1.26859 1.95084 1.23178 0.95873 0.85338 0.99385 1.21303 0.90613 0.99399 0.89051 1.57326 1.81793 1.18871 1.23134 1.19210 0.98345 0.71217 0.97955 1.21497 1.02620 0.92114 1.40227 0.92278 1.24904 0.96898 0.96767 0.95411 1.69931 1.34589 1.03043 1.45880 0.86556 0.83980 0.78463 0.78797 1.20684 1.21146 1.19762 1.02807 0.74779 0.72994 0.74122 1.93608 1.62422 1.68989 1.68919 1.93646 1.80607 1.42307 1.78805 1.34388 1.29427 1.04132 1.16679 1.21706 0.97172 0.90990 0.88329 1.19024 0.93961 0.95036 1.01086 1.20979 0.99356 0.92731 0.97351 1.20808 0.93573 0.98710 1.01495 1.19931 0.94676 0.95903 0.96767 1.20811 0.98724 0.95903 1.01701 1.20771 0.99368 0.93686 0.99436 1.21055 0.91987 0.97392 0.97036 0.89775 0.94747 0.94789 0.92988 0.94200 0.88504 0.88597 0.92620 0.94896 0.92846 0.82130 0.85544 0.86123 0.86197 0.91352 0.91587 0.91435 0.85931 0.86994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.38 9.02 -35.23 -0.32 -6.70 16 3 C 0.04 0.62 6.28 37.16 0.23 0.85 16 4 C 0.12 2.17 6.13 -4.04 -0.02 2.14 16 5 N -0.97 -20.62 2.75 -115.67 -0.32 -20.94 16 6 C 0.25 6.59 4.94 -5.20 -0.03 6.57 16 7 C -0.52 -15.08 9.38 -34.44 -0.32 -15.40 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 11 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 15 S 2.66 53.63 4.78 -107.50 -0.51 53.12 16 16 O -0.95 -23.38 16.99 -57.17 -0.97 -24.35 16 17 O -0.96 -18.57 11.62 -57.17 -0.66 -19.23 16 18 C -0.74 -12.03 10.10 28.83 0.29 -11.74 16 19 C 0.04 0.51 9.72 -37.57 -0.37 0.15 16 20 C -0.09 -1.29 3.92 -105.01 -0.41 -1.70 16 21 C -0.09 -1.05 9.79 -39.19 -0.38 -1.43 16 22 C -0.13 -1.47 9.68 -39.64 -0.38 -1.85 16 23 C -0.07 -0.87 5.89 -104.54 -0.62 -1.49 16 24 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 25 C -0.11 -1.56 9.68 -39.64 -0.38 -1.94 16 26 C -0.06 -0.85 6.51 -39.20 -0.26 -1.11 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.10 1.78 8.11 -51.94 -0.42 1.36 16 33 H 0.10 1.50 6.91 -51.93 -0.36 1.14 16 34 H 0.06 1.49 6.60 -51.93 -0.34 1.15 16 35 H 0.03 0.92 7.61 -51.93 -0.40 0.52 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.16 2.47 8.06 -52.48 -0.42 2.05 16 38 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 43 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 44 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.11 1.73 7.41 -52.49 -0.39 1.34 16 LS Contribution 385.87 15.07 5.81 5.81 Total: -1.00 -35.05 385.87 -9.47 -44.52 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.94 Total: 0.96 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: -1.27 Total: -24.40 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.42 Total: -46.98 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -1.95 Total: -50.28 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: 53.63 SS G_CDS: -0.51 Total: 53.12 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.05 -9.47 -44.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096258902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.530 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds