Wall clock time and date at job start Tue Mar 31 2020 07:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46619 * 216.98541 * 3 2 1 5 5 C 1.36744 * 120.00313 * 264.31011 * 4 3 2 6 6 H 1.07996 * 120.00592 * 201.45365 * 5 4 3 7 7 C 1.39100 * 119.99817 * 21.45587 * 5 4 3 8 8 N 1.31349 * 119.99561 * 12.08911 * 7 5 4 9 9 Si 1.86801 * 120.00370 * 192.08453 * 7 5 4 10 10 H 1.48497 * 109.46720 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46935 * 120.00118 * 9 7 5 12 12 H 1.48490 * 109.47228 * 240.00092 * 9 7 5 13 13 C 1.34774 * 120.00153 * 84.32200 * 4 3 2 14 14 O 1.21778 * 120.00190 * 180.02562 * 13 4 3 15 15 C 1.41802 * 119.99847 * 359.97438 * 13 4 3 16 16 C 1.35151 * 119.99783 * 173.03864 * 15 13 4 17 17 C 1.46923 * 120.00264 * 348.45997 * 16 15 13 18 18 C 1.40023 * 120.10077 * 315.96925 * 17 16 15 19 19 C 1.37614 * 119.89097 * 180.02562 * 18 17 16 20 20 C 1.39164 * 120.10975 * 0.02562 * 19 18 17 21 21 N 1.39494 * 119.90345 * 179.97438 * 20 19 18 22 22 C 1.46758 * 124.35023 * 174.31390 * 21 20 19 23 23 C 1.54480 * 105.47488 * 197.03358 * 22 21 20 24 24 C 1.54780 * 101.69299 * 334.39545 * 23 22 21 25 25 C 1.34419 * 124.34769 * 354.33707 * 21 20 19 26 26 O 1.21280 * 124.94021 * 359.53445 * 25 21 20 27 27 C 1.39180 * 120.20099 * 0.25284 * 20 19 18 28 28 C 1.37613 * 120.10248 * 359.44643 * 27 20 19 29 29 H 1.09001 * 109.47096 * 96.98722 * 3 2 1 30 30 H 1.08996 * 109.47431 * 336.98456 * 3 2 1 31 31 H 0.97004 * 119.99502 * 179.97438 * 8 7 5 32 32 H 1.07998 * 119.99896 * 353.04647 * 15 13 4 33 33 H 1.08004 * 119.99278 * 168.46211 * 16 15 13 34 34 H 1.07992 * 120.05573 * 359.97438 * 18 17 16 35 35 H 1.08008 * 119.94735 * 179.97438 * 19 18 17 36 36 H 1.08996 * 110.24907 * 316.03949 * 22 21 20 37 37 H 1.09006 * 110.24673 * 77.95216 * 22 21 20 38 38 H 1.09006 * 110.96622 * 92.69903 * 23 22 21 39 39 H 1.08998 * 110.97618 * 216.46473 * 23 22 21 40 40 H 1.09002 * 110.61722 * 266.39729 * 24 23 22 41 41 H 1.09004 * 110.43506 * 143.70418 * 24 23 22 42 42 H 1.08004 * 119.94658 * 179.70643 * 27 20 19 43 43 H 1.07997 * 120.05457 * 180.27266 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.1042 0.8310 5 6 3.4338 2.2970 0.2540 6 1 4.0986 2.9759 0.7672 7 6 2.9212 2.6359 -0.9939 8 7 1.9382 1.9358 -1.5122 9 14 3.6309 4.0867 -1.9325 10 1 4.7221 4.7047 -1.1373 11 1 4.1716 3.6177 -3.2336 12 1 2.5635 5.0906 -2.1731 13 6 3.2115 0.9438 2.1641 14 8 3.6165 1.8613 2.8549 15 6 2.8607 -0.2930 2.7625 16 6 3.1078 -0.5030 4.0745 17 6 3.9594 0.4332 4.8208 18 6 5.1523 0.9007 4.2557 19 6 5.9469 1.7771 4.9588 20 6 5.5670 2.1984 6.2295 21 7 6.3760 3.0865 6.9385 22 6 6.0152 3.6859 8.2286 23 6 6.9670 4.8898 8.4043 24 6 8.1762 4.4629 7.5376 25 6 7.5860 3.5035 6.5277 26 8 8.1279 3.1570 5.4995 27 6 4.3851 1.7319 6.7975 28 6 3.5809 0.8602 6.0996 29 1 2.9713 0.1258 -1.0200 30 1 2.9718 -0.9450 0.4018 31 1 1.5805 2.1724 -2.3823 32 1 2.3962 -1.0671 2.1698 33 1 2.6793 -1.3592 4.5744 34 1 5.4486 0.5733 3.2702 35 1 6.8674 2.1379 4.5239 36 1 4.9790 4.0236 8.2111 37 1 6.1631 2.9659 9.0336 38 1 6.5132 5.8047 8.0232 39 1 7.2599 5.0067 9.4477 40 1 8.9272 3.9605 8.1473 41 1 8.6083 5.3280 7.0346 42 1 4.0966 2.0580 7.7860 43 1 2.6618 0.5021 6.5394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096315726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:37 Heat of formation + Delta-G solvation = 44.237887 kcal Electronic energy + Delta-G solvation = -28606.381773 eV Core-core repulsion = 24618.699205 eV Total energy + Delta-G solvation = -3987.682567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.99891 -39.38478 -38.04089 -36.65351 -35.83771 -34.50461 -33.57820 -32.15301 -31.61443 -30.51199 -28.30703 -27.85261 -27.44929 -25.30858 -23.52186 -22.88021 -21.66291 -20.90408 -19.65371 -18.28499 -17.84213 -17.57249 -17.02579 -16.86071 -16.27233 -15.71927 -15.04698 -14.74752 -14.49553 -14.10606 -13.94227 -13.87315 -13.75906 -13.70632 -13.20039 -13.04237 -13.00731 -12.93409 -12.72297 -12.41798 -12.14315 -11.88816 -11.76495 -11.59151 -11.39569 -11.32430 -11.19938 -11.09260 -10.80272 -10.56915 -10.43840 -10.38112 -10.11858 -9.53573 -9.32106 -8.91694 -8.64276 -8.26007 -7.91984 -7.10716 -6.55264 -4.03035 1.18117 1.98410 2.13092 2.74184 2.85219 3.11597 3.20042 3.26629 3.69086 3.97566 4.05022 4.11133 4.13845 4.31339 4.37429 4.50198 4.71227 4.91299 4.94770 5.16557 5.17943 5.19015 5.26913 5.33467 5.36432 5.39091 5.47463 5.60086 5.64046 5.85087 5.90596 5.95394 5.97643 6.15540 6.40624 6.52909 6.54162 6.61891 6.73182 6.82996 6.98639 7.20947 7.25438 7.39348 7.51224 7.94953 8.06322 8.28619 8.77047 9.00494 9.15605 9.79396 10.48513 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.003235 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.376377 B = 8653.954817 C =10174.265924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.250 3.750 3 C 0.219 3.781 4 N -0.431 5.431 5 C -0.295 4.295 6 H 0.110 0.890 7 C 0.028 3.972 8 N -0.878 5.878 9 Si 0.932 3.068 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.467 3.533 14 O -0.562 6.562 15 C -0.188 4.188 16 C -0.063 4.063 17 C -0.068 4.068 18 C 0.004 3.996 19 C -0.167 4.167 20 C 0.159 3.841 21 N -0.555 5.555 22 C 0.095 3.905 23 C -0.132 4.132 24 C -0.153 4.153 25 C 0.510 3.490 26 O -0.508 6.508 27 C -0.175 4.175 28 C -0.083 4.083 29 H 0.131 0.869 30 H 0.084 0.916 31 H 0.275 0.725 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.148 0.852 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.313 -1.188 17.215 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.157 5.157 2 C -0.068 4.068 3 C 0.092 3.908 4 N -0.149 5.149 5 C -0.423 4.423 6 H 0.128 0.872 7 C -0.175 4.175 8 N -0.517 5.517 9 Si 0.759 3.241 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.208 1.208 13 C 0.260 3.740 14 O -0.447 6.447 15 C -0.209 4.209 16 C -0.085 4.085 17 C -0.069 4.069 18 C -0.015 4.015 19 C -0.187 4.187 20 C 0.067 3.933 21 N -0.279 5.279 22 C -0.027 4.027 23 C -0.169 4.169 24 C -0.193 4.193 25 C 0.299 3.701 26 O -0.384 6.384 27 C -0.196 4.196 28 C -0.102 4.102 29 H 0.148 0.852 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.165 0.835 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.133 0.867 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.039 -0.865 16.762 18.610 hybrid contribution 0.137 0.817 -0.791 1.145 sum 8.176 -0.048 15.971 17.942 Atomic orbital electron populations 1.80889 1.13637 1.10632 1.10544 1.29260 0.95327 0.90963 0.91281 1.18836 0.81617 0.90120 1.00247 1.43735 1.54792 1.11744 1.04627 1.19865 1.25702 0.95962 1.00787 0.87216 1.25421 0.94985 0.99113 0.98008 1.69717 1.22684 1.40467 1.18835 0.85740 0.78999 0.80337 0.79041 1.18988 1.20371 1.20752 1.17042 0.85706 0.89262 0.81974 1.90760 1.50341 1.43714 1.59933 1.22327 1.04329 0.97935 0.96295 1.22071 0.95443 0.97356 0.93617 1.18790 0.95155 0.99144 0.93782 1.20960 0.91602 0.92532 0.96399 1.21335 1.03058 1.01086 0.93216 1.17763 0.91368 0.92236 0.91973 1.45645 1.17891 1.43064 1.21283 1.22212 1.00667 0.95174 0.84664 1.22646 0.94930 0.98002 1.01360 1.22368 0.99046 1.00156 0.97768 1.21035 0.80788 0.81649 0.86613 1.90655 1.63966 1.58671 1.25074 1.20356 0.95470 1.03219 1.00563 1.20835 0.98322 0.97305 0.93749 0.85163 0.89845 0.91438 0.86388 0.85924 0.86281 0.83491 0.89564 0.90342 0.89593 0.88821 0.87538 0.87679 0.86697 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.46 18.54 42.16 0.78 -10.67 16 2 C 0.25 5.56 13.05 -20.76 -0.27 5.29 16 3 C 0.22 4.36 4.78 -6.83 -0.03 4.33 16 4 N -0.43 -10.06 2.59 -121.14 -0.31 -10.37 16 5 C -0.30 -7.59 9.30 -15.04 -0.14 -7.73 16 6 H 0.11 3.00 7.38 -52.49 -0.39 2.61 16 7 C 0.03 0.70 5.07 -17.44 -0.09 0.61 16 8 N -0.88 -21.97 9.07 55.50 0.50 -21.47 16 9 Si 0.93 19.93 29.57 -169.99 -5.03 14.90 16 10 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 11 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 C 0.47 10.62 6.41 -14.90 -0.10 10.53 16 14 O -0.56 -14.38 11.76 5.12 0.06 -14.32 16 15 C -0.19 -3.42 8.77 -39.32 -0.34 -3.76 16 16 C -0.06 -1.03 9.79 -37.17 -0.36 -1.39 16 17 C -0.07 -1.20 4.47 -105.04 -0.47 -1.67 16 18 C 0.00 0.08 6.65 -39.14 -0.26 -0.18 16 19 C -0.17 -3.17 9.26 -39.47 -0.37 -3.54 16 20 C 0.16 2.62 6.60 -83.68 -0.55 2.07 16 21 N -0.56 -7.41 3.12 -112.22 -0.35 -7.77 16 22 C 0.10 0.78 6.24 -3.13 -0.02 0.76 16 23 C -0.13 -0.77 7.19 -25.02 -0.18 -0.95 16 24 C -0.15 -1.23 6.87 -26.66 -0.18 -1.41 16 25 C 0.51 7.05 7.91 -10.86 -0.09 6.97 16 26 O -0.51 -9.15 14.79 5.56 0.08 -9.07 16 27 C -0.18 -2.59 9.38 -39.46 -0.37 -2.96 16 28 C -0.08 -1.30 9.79 -39.14 -0.38 -1.69 16 29 H 0.13 2.65 6.44 -51.93 -0.33 2.32 16 30 H 0.08 1.28 6.53 -51.93 -0.34 0.94 16 31 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.12 1.86 6.10 -52.49 -0.32 1.54 16 33 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 34 H 0.12 2.36 7.08 -52.49 -0.37 1.99 16 35 H 0.15 2.99 5.22 -52.48 -0.27 2.71 16 36 H 0.09 0.67 7.69 -51.93 -0.40 0.27 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.12 1.32 6.99 -52.48 -0.37 0.95 16 43 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 360.85 15.07 5.44 5.44 Total: -1.00 -34.10 360.85 -7.92 -42.02 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -4.89 Total: 6.03 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -4.20 Total: 5.28 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.62 Total: -50.28 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.14 Total: -23.39 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.10 -7.92 -42.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096315726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.257 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds