Wall clock time and date at job start Tue Mar 31 2020 04:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38143 * 119.97492 * 2 1 4 4 C 1.38821 * 119.95140 * 180.02562 * 3 2 1 5 5 N 1.40058 * 120.04120 * 179.97438 * 4 3 2 6 6 C 1.34785 * 119.99698 * 144.91213 * 5 4 3 7 7 O 1.21589 * 119.99631 * 4.60065 * 6 5 4 8 8 N 1.34775 * 119.99990 * 184.59629 * 6 5 4 9 9 C 1.46501 * 120.00111 * 0.02562 * 8 6 5 10 10 C 1.50698 * 109.47218 * 89.99608 * 9 8 6 11 11 H 1.08003 * 119.99623 * 0.02562 * 10 9 8 12 12 C 1.37869 * 120.00232 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00143 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 120.00166 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47086 * 90.00285 * 14 12 10 16 16 H 1.48504 * 109.47034 * 210.00144 * 14 12 10 17 17 H 1.48498 * 109.47098 * 330.00339 * 14 12 10 18 18 C 1.46500 * 119.99708 * 180.02562 * 8 6 5 19 19 C 1.53003 * 109.47264 * 90.00429 * 18 8 6 20 20 C 1.52992 * 109.47083 * 179.97438 * 19 18 8 21 21 N 1.46902 * 109.47035 * 179.97438 * 20 19 18 22 22 C 1.46899 * 110.99978 * 170.00012 * 21 20 19 23 23 C 1.46894 * 110.99732 * 293.94957 * 21 20 19 24 24 C 1.38861 * 119.91269 * 359.97438 * 4 3 2 25 25 C 1.38091 * 119.95368 * 359.97405 * 24 4 3 26 26 C 1.38444 * 119.97886 * 179.97438 * 2 1 3 27 27 F 1.35102 * 119.95282 * 359.72773 * 26 2 1 28 28 H 1.09000 * 109.46582 * 270.02490 * 1 2 3 29 29 H 1.09004 * 109.47362 * 30.02263 * 1 2 3 30 30 H 1.08992 * 109.47010 * 150.02551 * 1 2 3 31 31 H 1.07994 * 120.02275 * 359.97042 * 3 2 1 32 32 H 0.97001 * 120.00674 * 324.92069 * 5 4 3 33 33 H 1.08999 * 109.46988 * 209.99857 * 9 8 6 34 34 H 1.09005 * 109.46840 * 329.99985 * 9 8 6 35 35 H 0.97005 * 120.00293 * 179.97438 * 13 12 10 36 36 H 1.09010 * 109.46713 * 209.99876 * 18 8 6 37 37 H 1.08999 * 109.47510 * 329.99759 * 18 8 6 38 38 H 1.08999 * 109.46402 * 299.99682 * 19 18 8 39 39 H 1.08994 * 109.46981 * 59.99477 * 19 18 8 40 40 H 1.09004 * 109.47220 * 299.99654 * 20 19 18 41 41 H 1.08999 * 109.47566 * 59.99405 * 20 19 18 42 42 H 1.09003 * 109.47697 * 59.99645 * 22 21 20 43 43 H 1.08996 * 109.47321 * 179.97438 * 22 21 20 44 44 H 1.08998 * 109.47091 * 299.99677 * 22 21 20 45 45 H 1.08995 * 109.47408 * 60.00491 * 23 21 20 46 46 H 1.09003 * 109.46917 * 180.02562 * 23 21 20 47 47 H 1.09004 * 109.47473 * 299.99766 * 23 21 20 48 48 H 1.07997 * 120.02216 * 179.97438 * 24 4 3 49 49 H 1.08006 * 119.97602 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1967 0.0000 4 6 3.5855 1.1961 -0.0005 5 7 4.2871 2.4082 -0.0011 6 6 5.4516 2.5131 0.6694 7 8 5.9352 1.5342 1.2046 8 7 6.0801 3.7028 0.7466 9 6 5.4972 4.8823 0.1021 10 6 4.5845 5.5858 1.0732 11 1 4.4523 5.1938 2.0709 12 6 3.9192 6.7305 0.6885 13 7 4.0807 7.2081 -0.5261 14 14 2.7884 7.6030 1.8925 15 1 3.5646 8.6101 2.6596 16 1 1.6990 8.2816 1.1456 17 1 2.2028 6.6108 2.8295 18 6 7.3461 3.8166 1.4749 19 6 8.5105 3.5525 0.5181 20 6 9.8326 3.6720 1.2787 21 7 10.9505 3.4179 0.3602 22 6 12.2351 3.7533 0.9889 23 6 10.9412 2.0255 -0.1078 24 6 4.2775 -0.0078 -0.0005 25 6 3.5837 -1.2018 0.0005 26 6 2.1989 -1.1992 0.0005 27 9 1.5220 -2.3684 0.0066 28 1 -0.3632 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6573 2.1319 -0.0005 32 1 3.9350 3.1723 -0.4839 33 1 6.2940 5.5601 -0.2039 34 1 4.9267 4.5730 -0.7738 35 1 3.6123 8.0132 -0.7969 36 1 7.4375 4.8204 1.8901 37 1 7.3672 3.0858 2.2834 38 1 8.4190 2.5488 0.1030 39 1 8.4894 4.2834 -0.2902 40 1 9.9238 4.6759 1.6935 41 1 9.8540 2.9414 2.0873 42 1 12.3721 3.1448 1.8829 43 1 13.0456 3.5553 0.2875 44 1 12.2410 4.8082 1.2630 45 1 10.0064 1.8243 -0.6311 46 1 11.7794 1.8645 -0.7859 47 1 11.0313 1.3544 0.7464 48 1 5.3574 -0.0103 -0.0014 49 1 4.1216 -2.1384 0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096461428.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:54 Heat of formation + Delta-G solvation = -60.253103 kcal Electronic energy + Delta-G solvation = -29357.298448 eV Core-core repulsion = 25233.293254 eV Total energy + Delta-G solvation = -4124.005194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.191 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.82787 -41.72654 -39.85436 -38.64963 -36.95348 -35.86593 -34.70973 -33.63790 -32.83382 -30.25066 -29.26514 -28.48980 -27.86524 -27.02174 -24.99714 -24.16539 -23.66460 -22.57405 -21.74875 -20.67344 -19.26919 -18.60212 -18.48135 -18.04344 -17.31438 -16.75001 -16.67148 -16.55975 -16.46904 -16.25138 -15.74597 -15.58170 -15.19027 -15.02132 -14.61111 -14.51712 -14.45300 -14.19390 -14.07302 -13.82576 -13.61979 -13.36224 -13.27133 -13.05344 -12.93945 -12.91741 -12.85673 -12.66445 -12.55053 -12.41490 -12.35781 -12.07393 -11.98124 -11.70969 -11.50949 -11.23965 -10.93260 -10.60251 -9.86649 -9.56553 -9.31660 -8.90582 -8.20567 -6.35989 0.12008 0.23994 1.41456 1.44911 1.53062 1.73222 2.08952 2.40147 2.67395 2.91198 3.09493 3.11833 3.31690 3.74864 3.82190 3.95025 4.11986 4.20140 4.23374 4.30659 4.38132 4.43969 4.46814 4.51213 4.63578 4.67150 4.73073 4.75914 4.77185 4.81712 4.83930 4.86855 4.99671 5.01833 5.10019 5.14196 5.15353 5.23167 5.25916 5.31027 5.31774 5.55152 5.61792 5.76802 6.01861 6.02429 6.05615 6.09729 6.14004 6.66656 6.95973 7.36133 7.57138 8.83940 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.006746 B = 0.003990 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4149.637949 B = 7015.359418 C =10748.758961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.128 4.128 4 C 0.155 3.845 5 N -0.680 5.680 6 C 0.704 3.296 7 O -0.620 6.620 8 N -0.609 5.609 9 C 0.255 3.745 10 C -0.546 4.546 11 H 0.050 0.950 12 C 0.028 3.972 13 N -0.916 5.916 14 Si 0.954 3.046 15 H -0.277 1.277 16 H -0.280 1.280 17 H -0.274 1.274 18 C 0.139 3.861 19 C -0.114 4.114 20 C 0.066 3.934 21 N -0.565 5.565 22 C 0.025 3.975 23 C 0.024 3.976 24 C -0.115 4.115 25 C -0.127 4.127 26 C 0.059 3.941 27 F -0.142 7.142 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.146 0.854 32 H 0.417 0.583 33 H 0.027 0.973 34 H 0.025 0.975 35 H 0.269 0.731 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.037 0.963 42 H 0.029 0.971 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.080 0.920 47 H 0.026 0.974 48 H 0.135 0.865 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.417 -10.661 0.127 11.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.098 4.098 3 C -0.149 4.149 4 C 0.059 3.941 5 N -0.328 5.328 6 C 0.406 3.594 7 O -0.502 6.502 8 N -0.342 5.342 9 C 0.134 3.866 10 C -0.585 4.585 11 H 0.068 0.932 12 C -0.173 4.173 13 N -0.554 5.554 14 Si 0.780 3.220 15 H -0.202 1.202 16 H -0.205 1.205 17 H -0.199 1.199 18 C 0.015 3.985 19 C -0.153 4.153 20 C -0.063 4.063 21 N -0.289 5.289 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.135 4.135 25 C -0.146 4.146 26 C 0.039 3.961 27 F -0.121 7.121 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.163 0.837 32 H 0.257 0.743 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.045 0.955 48 H 0.152 0.848 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.690 -10.822 -0.010 11.434 hybrid contribution -0.634 0.491 0.921 1.221 sum 3.056 -10.332 0.911 10.813 Atomic orbital electron populations 1.20790 0.88006 1.04273 1.03673 1.19926 0.98280 0.90604 1.00988 1.20845 0.91487 0.98881 1.03647 1.17880 0.91221 0.85358 0.99600 1.42830 1.22760 1.13626 1.53586 1.15923 0.80561 0.83745 0.79121 1.90784 1.68256 1.37207 1.53938 1.47379 1.23447 1.07683 1.55656 1.19026 0.93273 0.82178 0.92140 1.21627 1.27201 1.10278 0.99375 0.93180 1.25562 0.97787 0.97364 0.96612 1.69994 1.43447 1.23096 1.18909 0.85620 0.78713 0.78628 0.79072 1.20227 1.20547 1.19866 1.21217 0.81174 1.02124 0.93962 1.21774 0.93383 1.01357 0.98780 1.21965 0.89536 1.01597 0.93198 1.61959 1.03814 1.23423 1.39677 1.22425 0.90334 1.01543 0.97987 1.22417 1.02785 0.87491 0.99750 1.21117 1.01117 0.90413 1.00888 1.21137 0.92155 0.99501 1.01796 1.17541 0.90042 0.81097 1.07398 1.91442 1.80241 1.46022 1.94354 0.89923 0.89555 0.90470 0.83659 0.74326 0.95476 0.95757 0.92234 0.90144 0.91292 0.92980 0.92227 0.89849 0.94521 0.95285 0.90287 0.90871 0.92346 0.90107 0.95513 0.84762 0.82797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 9.83 71.24 0.70 -1.46 16 2 C -0.10 -2.52 5.88 -19.84 -0.12 -2.63 16 3 C -0.13 -3.73 9.62 22.39 0.22 -3.52 16 4 C 0.16 5.28 6.30 38.12 0.24 5.52 16 5 N -0.68 -25.61 5.22 -317.11 -1.66 -27.27 16 6 C 0.70 29.20 8.12 179.05 1.45 30.65 16 7 O -0.62 -27.16 13.36 -4.00 -0.05 -27.21 16 8 N -0.61 -24.91 2.46 -844.17 -2.07 -26.98 16 9 C 0.25 11.60 4.97 85.63 0.43 12.03 16 10 C -0.55 -27.18 9.39 25.60 0.24 -26.94 16 11 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 12 C 0.03 1.40 5.46 84.65 0.46 1.86 16 13 N -0.92 -48.19 13.29 21.44 0.28 -47.90 16 14 Si 0.95 40.44 29.54 68.60 2.03 42.47 16 15 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 18 C 0.14 4.94 5.41 86.38 0.47 5.41 16 19 C -0.11 -3.57 5.46 30.59 0.17 -3.40 16 20 C 0.07 1.70 4.96 86.30 0.43 2.13 16 21 N -0.56 -13.77 5.02 -948.88 -4.76 -18.53 16 22 C 0.02 0.46 9.57 127.69 1.22 1.69 16 23 C 0.02 0.53 9.32 127.69 1.19 1.72 16 24 C -0.11 -3.75 8.69 22.38 0.19 -3.55 16 25 C -0.13 -3.51 10.02 22.29 0.22 -3.28 16 26 C 0.06 1.61 7.24 22.38 0.16 1.77 16 27 F -0.14 -3.68 16.47 44.97 0.74 -2.94 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.46 8.09 -2.38 -0.02 1.44 16 30 H 0.08 1.38 7.64 -2.39 -0.02 1.36 16 31 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 32 H 0.42 15.72 6.52 -92.71 -0.60 15.12 16 33 H 0.03 1.32 8.07 -2.39 -0.02 1.30 16 34 H 0.02 1.14 6.30 -2.38 -0.02 1.12 16 35 H 0.27 13.46 8.31 -92.70 -0.77 12.69 16 36 H 0.08 2.81 8.07 -2.38 -0.02 2.79 16 37 H 0.07 2.48 7.42 -2.39 -0.02 2.46 16 38 H 0.05 1.75 6.55 -2.39 -0.02 1.73 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.08 2.03 8.06 -2.38 -0.02 2.01 16 41 H 0.04 0.93 8.12 -2.39 -0.02 0.91 16 42 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.08 1.25 8.12 -2.39 -0.02 1.24 16 44 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 45 H 0.06 1.47 6.47 -2.39 -0.02 1.45 16 46 H 0.08 1.51 8.12 -2.39 -0.02 1.49 16 47 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.13 4.79 6.22 -2.91 -0.02 4.77 16 49 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -58.00 403.60 2.53 -55.47 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: 0.34 Total: 34.90 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 7.68 Total: 17.98 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -8.21 Total: -120.68 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.05 Total: -27.21 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.74 Total: -2.94 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -58.00 2.53 -55.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096461428.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.781 kcal (2) G-P(sol) polarization free energy of solvation -58.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds