Wall clock time and date at job start Tue Mar 31 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35760 * 116.99956 * 2 1 4 4 C 1.39640 * 119.72982 * 0.02562 * 3 2 1 5 5 C 1.36010 * 121.08760 * 179.70299 * 4 3 2 6 6 C 1.40666 * 120.15952 * 0.29133 * 5 4 3 7 7 C 1.40548 * 121.10311 * 180.02562 * 6 5 4 8 8 C 1.36140 * 119.68109 * 179.97438 * 7 6 5 9 9 C 1.39306 * 120.95732 * 0.03772 * 8 7 6 10 10 C 1.36213 * 120.92162 * 359.97438 * 9 8 7 11 11 C 1.40243 * 119.69025 * 359.97438 * 10 9 8 12 12 C 1.38884 * 119.73214 * 180.27627 * 3 2 1 13 13 C 1.48038 * 120.36769 * 359.97438 * 12 3 2 14 14 C 1.42424 * 126.96065 * 0.30081 * 13 12 3 15 15 C 1.35167 * 103.93691 * 179.97438 * 14 13 12 16 16 C 1.50702 * 126.63832 * 179.97438 * 15 14 13 17 17 N 1.46501 * 109.47089 * 89.99784 * 16 15 14 18 18 C 1.46498 * 120.00307 * 89.99815 * 17 16 15 19 19 C 1.36937 * 119.99729 * 270.00061 * 17 16 15 20 20 H 1.07997 * 119.99992 * 23.03709 * 19 17 16 21 21 C 1.38815 * 119.99706 * 203.03313 * 19 17 16 22 22 N 1.31618 * 120.00337 * 12.95750 * 21 19 17 23 23 Si 1.86806 * 119.99849 * 192.95691 * 21 19 17 24 24 H 1.48503 * 109.47130 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47150 * 120.00008 * 23 21 19 26 26 H 1.48498 * 109.46714 * 240.00371 * 23 21 19 27 27 O 1.34097 * 106.72791 * 359.97438 * 15 14 13 28 28 N 1.20913 * 111.87113 * 359.75101 * 27 15 14 29 29 H 1.08997 * 109.47877 * 300.00136 * 1 2 3 30 30 H 1.09002 * 109.47047 * 60.00080 * 1 2 3 31 31 H 1.09006 * 109.47420 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.46025 * 359.97318 * 4 3 2 33 33 H 1.07998 * 119.92290 * 180.27209 * 5 4 3 34 34 H 1.07999 * 120.15556 * 359.96191 * 7 6 5 35 35 H 1.07997 * 119.52068 * 180.02562 * 8 7 6 36 36 H 1.07996 * 119.53502 * 179.97438 * 9 8 7 37 37 H 1.08007 * 120.15689 * 179.97438 * 10 9 8 38 38 H 1.08002 * 128.03463 * 359.92154 * 14 13 12 39 39 H 1.08997 * 109.47202 * 209.99583 * 16 15 14 40 40 H 1.08993 * 109.46866 * 329.99817 * 16 15 14 41 41 H 1.09005 * 109.46838 * 95.12095 * 18 17 16 42 42 H 1.08992 * 109.47162 * 215.12513 * 18 17 16 43 43 H 1.09002 * 109.47198 * 335.12748 * 18 17 16 44 44 H 0.96993 * 120.00029 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2793 2.3771 0.0005 5 6 1.8678 3.6033 0.0066 6 6 3.2701 3.7141 0.0063 7 6 3.8991 4.9710 0.0130 8 6 5.2585 5.0445 0.0130 9 6 6.0386 3.8904 0.0057 10 6 5.4624 2.6561 -0.0012 11 6 4.0646 2.5420 -0.0004 12 6 3.4326 1.2759 -0.0058 13 6 4.2410 0.0357 -0.0114 14 6 3.7553 -1.3031 -0.0177 15 6 4.8775 -2.0565 -0.0216 16 6 4.9501 -3.5618 -0.0282 17 7 4.9729 -4.0435 -1.4116 18 6 6.2514 -4.2232 -2.1038 19 6 3.7989 -4.3257 -2.0576 20 1 2.8779 -3.8675 -1.7288 21 6 3.7927 -5.2008 -3.1352 22 7 4.8460 -5.9514 -3.3796 23 14 2.2895 -5.3132 -4.2385 24 1 1.2477 -4.3729 -3.7530 25 1 2.6687 -4.9574 -5.6295 26 1 1.7570 -6.6991 -4.2097 27 8 5.9138 -1.2055 -0.0184 28 7 5.5497 -0.0525 -0.0180 29 1 -0.3635 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2016 2.3054 0.0005 33 1 1.2571 4.4940 0.0114 34 1 3.3068 5.8740 0.0179 35 1 5.7391 6.0116 0.0186 36 1 7.1152 3.9754 0.0054 37 1 6.0791 1.7694 -0.0073 38 1 2.7287 -1.6386 -0.0182 39 1 5.8569 -3.8841 0.4836 40 1 4.0790 -3.9698 0.4843 41 1 6.5706 -5.2615 -2.0135 42 1 6.1330 -3.9697 -3.1572 43 1 7.0020 -3.5721 -1.6555 44 1 4.8415 -6.5631 -4.1323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096496393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:08 Heat of formation + Delta-G solvation = 103.166917 kcal Electronic energy + Delta-G solvation = -28790.187267 eV Core-core repulsion = 24870.485966 eV Total energy + Delta-G solvation = -3919.701302 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 10.03 seconds Orbital eigenvalues (eV) -44.14355 -40.70016 -38.94670 -35.81800 -35.65701 -34.43621 -32.45086 -31.50556 -30.32151 -29.92591 -29.48030 -27.09331 -26.36841 -25.75440 -24.06671 -23.15931 -22.62496 -21.89194 -21.33977 -19.54952 -18.42026 -17.26107 -16.99854 -16.95100 -16.70790 -16.24431 -15.82048 -15.69795 -14.90469 -14.73282 -14.49868 -13.95355 -13.75259 -13.62875 -13.57726 -13.35869 -13.16204 -12.85500 -12.60729 -12.48758 -12.01715 -11.87841 -11.63537 -11.40133 -11.08161 -10.99384 -10.92460 -10.80242 -10.73659 -10.65228 -10.50374 -10.27881 -9.99511 -9.96832 -9.28113 -8.76271 -8.55747 -8.49595 -7.51992 -6.90474 -5.79535 -3.28382 0.29341 0.95897 1.76011 2.27598 2.72187 3.15528 3.23836 3.34481 3.42175 3.44087 3.80193 4.11305 4.23765 4.46178 4.51524 4.69368 4.78347 4.83660 5.01236 5.05189 5.06311 5.17198 5.26057 5.31025 5.36710 5.41964 5.50082 5.58836 5.75033 5.83973 5.87711 5.95441 6.04573 6.06525 6.14189 6.30667 6.42864 6.45108 6.49890 6.63194 6.71651 6.75746 6.76061 6.96184 7.26736 7.34887 7.68691 7.77347 8.30151 8.86495 9.14435 9.75367 10.22873 11.25119 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.003462 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.522975 B = 8086.517911 C = 9321.789852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.298 6.298 3 C 0.152 3.848 4 C -0.189 4.189 5 C -0.063 4.063 6 C -0.084 4.084 7 C -0.103 4.103 8 C -0.126 4.126 9 C -0.113 4.113 10 C -0.113 4.113 11 C -0.002 4.002 12 C -0.044 4.044 13 C 0.060 3.940 14 C -0.212 4.212 15 C -0.020 4.020 16 C 0.219 3.781 17 N -0.584 5.584 18 C 0.156 3.844 19 C -0.263 4.263 20 H 0.071 0.929 21 C 0.008 3.992 22 N -0.902 5.902 23 Si 0.905 3.095 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.289 1.289 27 O 0.090 5.910 28 N -0.381 5.381 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.159 0.841 38 H 0.173 0.827 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.039 0.961 42 H 0.042 0.958 43 H 0.004 0.996 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.811 18.805 9.152 21.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.210 6.210 3 C 0.104 3.896 4 C -0.207 4.207 5 C -0.081 4.081 6 C -0.084 4.084 7 C -0.121 4.121 8 C -0.145 4.145 9 C -0.131 4.131 10 C -0.131 4.131 11 C -0.003 4.003 12 C -0.046 4.046 13 C -0.095 4.095 14 C -0.235 4.235 15 C -0.087 4.087 16 C 0.088 3.912 17 N -0.305 5.305 18 C 0.012 3.988 19 C -0.392 4.392 20 H 0.089 0.911 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.735 3.265 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.216 1.216 27 O 0.027 5.973 28 N -0.089 5.089 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.176 0.824 38 H 0.190 0.810 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.023 0.977 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.666 19.284 8.972 21.774 hybrid contribution -1.917 -0.170 -0.904 2.126 sum -6.583 19.113 8.068 21.766 Atomic orbital electron populations 1.23152 0.78536 1.04545 1.01102 1.86237 1.21189 1.25934 1.87678 1.18844 0.90757 0.84701 0.95308 1.20901 1.00269 0.91929 1.07626 1.20892 0.93366 0.97275 0.96587 1.17973 0.93163 0.93083 1.04150 1.20916 0.94956 0.95889 1.00289 1.20834 0.93977 0.98488 1.01156 1.20936 1.00109 0.92320 0.99737 1.21826 0.93833 0.99665 0.97732 1.17730 0.93781 0.90629 0.98145 1.16967 0.88739 0.89795 1.09117 1.21530 0.89883 0.93722 1.04328 1.22539 1.00953 0.90110 1.09905 1.26849 0.85625 0.97843 0.98378 1.19418 1.01857 0.81186 0.88746 1.43983 1.04322 1.74099 1.08118 1.20920 0.84152 0.97963 0.95747 1.19236 0.87043 1.21045 1.11899 0.91087 1.25013 0.97484 0.96362 1.00246 1.70080 1.29236 1.25248 1.30073 0.86182 0.82284 0.77387 0.80661 1.20210 1.21541 1.21568 1.84725 1.34715 1.10658 1.67240 1.73788 1.13815 0.99380 1.21894 0.92649 0.92551 0.87751 0.84753 0.85038 0.85721 0.86165 0.85955 0.82418 0.80975 0.91897 0.89467 0.94308 0.93944 0.97745 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.80 101.05 0.99 1.19 16 2 O -0.30 -4.24 7.31 -18.99 -0.14 -4.38 16 3 C 0.15 2.22 6.68 -38.82 -0.26 1.96 16 4 C -0.19 -2.13 8.93 -39.86 -0.36 -2.48 16 5 C -0.06 -0.67 9.74 -39.47 -0.38 -1.05 16 6 C -0.08 -1.08 5.74 -106.83 -0.61 -1.69 16 7 C -0.10 -1.10 9.76 -39.47 -0.39 -1.48 16 8 C -0.13 -1.35 9.95 -39.94 -0.40 -1.75 16 9 C -0.11 -1.40 9.95 -39.91 -0.40 -1.80 16 10 C -0.11 -1.73 9.32 -39.56 -0.37 -2.10 16 11 C 0.00 -0.03 5.76 -106.61 -0.61 -0.65 16 12 C -0.04 -0.75 5.92 -104.39 -0.62 -1.37 16 13 C 0.06 1.16 6.96 -82.52 -0.57 0.58 16 14 C -0.21 -4.11 9.96 -39.06 -0.39 -4.50 16 15 C -0.02 -0.40 7.05 -35.40 -0.25 -0.65 16 16 C 0.22 4.39 6.20 -5.19 -0.03 4.36 16 17 N -0.58 -14.48 2.91 -182.51 -0.53 -15.01 16 18 C 0.16 3.86 8.98 59.85 0.54 4.40 16 19 C -0.26 -7.08 9.65 -15.06 -0.15 -7.22 16 20 H 0.07 1.87 7.86 -52.49 -0.41 1.45 16 21 C 0.01 0.22 5.10 -17.43 -0.09 0.13 16 22 N -0.90 -25.86 10.71 55.49 0.59 -25.27 16 23 Si 0.91 21.60 29.57 -169.99 -5.03 16.57 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 O 0.09 1.80 11.18 17.03 0.19 1.99 16 28 N -0.38 -7.47 8.89 33.31 0.30 -7.17 16 29 H 0.05 0.41 7.64 -51.93 -0.40 0.01 16 30 H 0.06 0.46 7.64 -51.93 -0.40 0.07 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.13 1.09 6.22 -52.49 -0.33 0.77 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.16 2.66 4.89 -52.48 -0.26 2.41 16 38 H 0.17 3.20 6.22 -52.49 -0.33 2.88 16 39 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 40 H 0.09 1.64 8.04 -51.93 -0.42 1.22 16 41 H 0.04 1.01 7.34 -51.93 -0.38 0.63 16 42 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 43 H 0.00 0.09 8.03 -51.93 -0.42 -0.33 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -32.06 365.31 -8.84 -40.89 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.38 Total: 1.01 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -4.35 Total: -14.13 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.36 Total: -47.45 kcal Atomic # 8 Polarization: -2.45 SS G_CDS: 0.05 Total: -2.39 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.06 -8.84 -40.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096496393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.061 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.03 seconds