Wall clock time and date at job start Tue Mar 31 2020 07:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28719 * 4 3 2 6 6 C 1.50700 * 120.00273 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47635 * 89.99495 * 6 5 4 8 8 H 1.09002 * 109.47386 * 305.00268 * 7 6 5 9 9 C 1.52997 * 109.47015 * 64.99886 * 7 6 5 10 10 C 1.50693 * 109.47602 * 184.99945 * 7 6 5 11 11 O 1.34926 * 120.00025 * 84.99714 * 10 7 6 12 12 N 1.29034 * 120.00351 * 265.00254 * 10 7 6 13 13 S 1.65600 * 120.00314 * 179.97438 * 12 10 7 14 14 O 1.42099 * 104.27938 * 296.07262 * 13 12 10 15 15 O 1.42101 * 104.27551 * 63.93081 * 13 12 10 16 16 C 1.81396 * 104.45011 * 180.02562 * 13 12 10 17 17 C 1.53007 * 109.47094 * 180.02562 * 16 13 12 18 18 C 1.50701 * 109.46912 * 179.97438 * 17 16 13 19 19 H 1.08002 * 120.00468 * 0.02562 * 18 17 16 20 20 C 1.37887 * 119.99713 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99656 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47434 * 60.00422 * 22 20 18 24 24 H 1.48503 * 109.47193 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47493 * 300.00083 * 22 20 18 26 26 C 1.38238 * 119.99712 * 359.97124 * 5 4 3 27 27 C 1.38234 * 120.00028 * 359.97438 * 26 5 4 28 28 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 29 29 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 30 30 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 31 31 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 33 33 H 1.08999 * 109.46948 * 210.00264 * 6 5 4 34 34 H 1.09009 * 109.46815 * 329.99236 * 6 5 4 35 35 H 1.09005 * 109.47233 * 180.02562 * 9 7 6 36 36 H 1.09006 * 109.47753 * 300.00375 * 9 7 6 37 37 H 1.09006 * 109.47242 * 60.00516 * 9 7 6 38 38 H 0.96691 * 114.00245 * 180.02562 * 11 10 7 39 39 H 1.08999 * 109.47286 * 299.99628 * 16 13 12 40 40 H 1.08994 * 109.47379 * 60.00054 * 16 13 12 41 41 H 1.09004 * 109.46932 * 300.00087 * 17 16 13 42 42 H 1.09002 * 109.47021 * 59.99980 * 17 16 13 43 43 H 0.96999 * 119.99576 * 180.02562 * 21 20 18 44 44 H 1.08002 * 119.99691 * 179.97438 * 26 5 4 45 45 H 1.07999 * 119.99968 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0055 6 6 5.7787 -0.0001 0.0112 7 6 6.2833 -0.0034 1.4556 8 1 5.8467 0.8371 1.9950 9 6 5.8760 -1.3123 2.1351 10 6 7.7851 0.1203 1.4633 11 8 8.3620 1.3385 1.4011 12 7 8.5195 -0.9386 1.5294 13 16 10.1699 -0.8026 1.5373 14 8 10.4813 -0.2406 0.2699 15 8 10.4580 -0.1026 2.7399 16 6 10.7645 -2.5134 1.6377 17 6 12.2945 -2.5215 1.6531 18 6 12.7885 -3.9427 1.7371 19 1 12.0820 -4.7587 1.7753 20 6 14.1426 -4.2015 1.7642 21 7 15.0029 -3.2078 1.7173 22 14 14.7549 -5.9631 1.8691 23 1 14.2671 -6.7276 0.6932 24 1 16.2398 -5.9710 1.8840 25 1 14.2446 -6.5913 3.1143 26 6 3.5805 -1.1972 0.0001 27 6 2.1981 -1.1972 -0.0045 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1325 0.0004 32 1 4.1205 2.1324 0.0100 33 1 6.1439 -0.8889 -0.5034 34 1 6.1439 0.8911 -0.4993 35 1 6.2351 -1.3145 3.1643 36 1 4.7896 -1.4019 2.1295 37 1 6.3126 -2.1529 1.5957 38 1 9.3286 1.3169 1.4113 39 1 10.3900 -2.9753 2.5512 40 1 10.4066 -3.0738 0.7741 41 1 12.6695 -2.0594 0.7398 42 1 12.6521 -1.9612 2.5170 43 1 15.9555 -3.3899 1.7360 44 1 4.1205 -2.1325 -0.0005 45 1 1.6581 -2.1325 -0.0091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097049135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:48 Heat of formation + Delta-G solvation = -90.660167 kcal Electronic energy + Delta-G solvation = -26486.513330 eV Core-core repulsion = 22596.132344 eV Total energy + Delta-G solvation = -3890.380986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 5.97 seconds Orbital eigenvalues (eV) -40.40917 -39.65296 -36.73747 -36.31827 -35.60039 -33.98818 -33.81129 -32.13275 -31.23380 -31.20558 -28.59841 -26.16771 -25.67888 -24.33499 -22.98889 -21.90837 -21.16447 -20.22822 -19.75942 -18.09222 -17.19984 -16.69378 -16.27243 -15.98282 -15.85234 -15.51607 -15.24359 -14.90386 -14.71680 -14.45844 -14.24091 -14.06436 -13.69885 -13.51346 -13.29307 -12.95332 -12.64901 -12.60010 -12.54320 -12.20136 -11.99667 -11.90094 -11.78580 -11.70908 -11.52558 -11.34656 -11.27599 -11.11781 -11.07867 -11.01890 -10.66356 -10.46432 -10.40875 -10.07508 -9.75946 -9.25171 -9.19835 -8.79017 -8.52130 -6.14638 -4.20517 0.58815 0.96045 1.11628 1.35524 2.71675 3.10967 3.27171 3.31586 3.33755 3.43324 3.69488 4.34525 4.35829 4.43674 4.58609 4.59891 4.65564 4.73513 4.77248 4.87418 4.94855 5.14559 5.20230 5.20606 5.22086 5.30115 5.42953 5.47467 5.55430 5.57908 5.65671 5.66534 5.75705 5.77923 5.80367 5.86740 6.11929 6.17175 6.29632 6.33893 6.42370 6.71455 7.10334 7.24954 7.30166 7.78247 8.13231 8.82503 9.44205 10.96440 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022229 B = 0.002130 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.310216 B =13144.426734 C =14008.854631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.084 4.084 6 C -0.076 4.076 7 C -0.025 4.025 8 H 0.108 0.892 9 C -0.140 4.140 10 C 0.492 3.508 11 O -0.500 6.500 12 N -0.985 5.985 13 S 2.500 3.500 14 O -0.983 6.983 15 O -0.983 6.983 16 C -0.534 4.534 17 C 0.025 3.975 18 C -0.521 4.521 19 H 0.063 0.937 20 C 0.058 3.942 21 N -0.891 5.891 22 Si 0.903 3.097 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.105 4.105 27 C -0.120 4.120 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.400 0.600 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.266 0.734 44 H 0.127 0.873 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.824 7.503 -2.812 29.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C -0.138 4.138 4 C -0.128 4.128 5 C -0.084 4.084 6 C -0.114 4.114 7 C -0.046 4.046 8 H 0.126 0.874 9 C -0.197 4.197 10 C 0.271 3.729 11 O -0.295 6.295 12 N -0.845 5.845 13 S 2.604 3.396 14 O -0.972 6.972 15 O -0.972 6.972 16 C -0.670 4.670 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.082 0.918 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.730 3.270 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.123 4.123 27 C -0.138 4.138 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.259 0.741 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.145 0.855 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -28.686 7.969 -2.826 29.906 hybrid contribution 1.442 -0.989 0.087 1.750 sum -27.244 6.980 -2.739 28.257 Atomic orbital electron populations 1.20796 0.91350 1.02751 1.02282 1.19947 0.96042 0.93316 0.99728 1.21013 0.94132 0.97517 1.01179 1.21086 0.94170 0.97691 0.99840 1.19657 0.94543 0.93403 1.00793 1.20648 0.91709 1.04880 0.94183 1.20362 0.82826 1.02657 0.98791 0.87353 1.21843 1.01384 0.95354 1.01157 1.24216 0.96218 0.77994 0.74475 1.84966 1.27744 1.31432 1.85405 1.73979 1.31286 1.39502 1.39765 1.08067 0.75311 0.81367 0.74833 1.93617 1.83996 1.76859 1.42746 1.93618 1.84334 1.71528 1.47742 1.29758 1.10446 1.15776 1.10987 1.19058 0.82934 1.00388 0.99017 1.20944 0.91820 0.91026 1.52267 0.91836 1.25079 0.96805 0.97807 0.94809 1.69949 1.02347 1.31229 1.49318 0.86480 0.77656 0.84055 0.78791 1.20006 1.21070 1.20010 1.21134 0.94092 0.97814 0.99297 1.21042 0.94182 0.97536 1.01077 0.91247 0.91554 0.91609 0.86160 0.85829 0.89211 0.89793 0.91743 0.91112 0.90063 0.74051 0.85437 0.85440 0.94743 0.94747 0.92435 0.85529 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.01 36.00 0.36 -0.20 16 2 C -0.09 -0.63 5.88 -104.63 -0.62 -1.25 16 3 C -0.12 -0.85 9.70 -39.58 -0.38 -1.23 16 4 C -0.11 -0.82 9.70 -39.58 -0.38 -1.20 16 5 C -0.08 -0.66 4.71 -104.62 -0.49 -1.15 16 6 C -0.08 -0.64 4.82 -27.89 -0.13 -0.77 16 7 C -0.03 -0.24 2.82 -91.78 -0.26 -0.49 16 8 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 9 C -0.14 -1.23 8.25 37.16 0.31 -0.92 16 10 C 0.49 6.55 6.91 -13.46 -0.09 6.46 16 11 O -0.50 -6.95 13.48 -30.96 -0.42 -7.36 16 12 N -0.98 -15.02 9.60 32.46 0.31 -14.70 16 13 S 2.50 47.21 4.31 -107.50 -0.46 46.75 16 14 O -0.98 -20.56 17.07 -61.33 -1.05 -21.60 16 15 O -0.98 -20.70 17.07 -61.34 -1.05 -21.75 16 16 C -0.53 -10.73 6.12 37.16 0.23 -10.51 16 17 C 0.03 0.66 4.98 -27.88 -0.14 0.52 16 18 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 19 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 20 C 0.06 1.64 5.46 -17.81 -0.10 1.54 16 21 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 22 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 C -0.11 -0.79 7.96 -39.58 -0.32 -1.11 16 27 C -0.12 -0.86 9.70 -39.58 -0.38 -1.24 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 30 H 0.06 0.27 8.09 -51.93 -0.42 -0.15 16 31 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 32 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 34 H 0.08 0.68 8.09 -51.92 -0.42 0.26 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.51 6.27 -51.93 -0.33 0.18 16 37 H 0.08 0.76 7.79 -51.93 -0.40 0.35 16 38 H 0.40 5.98 5.36 53.48 0.29 6.27 16 39 H 0.13 2.33 8.14 -51.92 -0.42 1.91 16 40 H 0.13 2.32 8.14 -51.93 -0.42 1.90 16 41 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.13 0.82 8.04 -52.49 -0.42 0.40 16 45 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 388.83 15.07 5.86 5.86 Total: -1.00 -34.72 388.83 -10.12 -44.84 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.31 Total: 3.90 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -2.72 Total: -26.38 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 1.05 Total: -40.53 kcal Atomic # 8 Polarization: -48.20 SS G_CDS: -2.51 Total: -50.71 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 47.21 SS G_CDS: -0.46 Total: 46.75 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.72 -10.12 -44.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097049135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.817 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.97 seconds