Wall clock time and date at job start Tue Mar 31 2020 07:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38231 * 120.00264 * 2 1 4 4 C 1.38239 * 120.00080 * 180.02562 * 3 2 1 5 5 C 1.38233 * 119.99801 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00225 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47192 * 89.99528 * 6 5 4 8 8 H 1.09000 * 109.46737 * 55.00832 * 7 6 5 9 9 C 1.52990 * 109.47456 * 295.00719 * 7 6 5 10 10 C 1.50700 * 109.46977 * 175.00298 * 7 6 5 11 11 O 1.34924 * 120.00042 * 275.00258 * 10 7 6 12 12 N 1.29038 * 119.99985 * 95.00265 * 10 7 6 13 13 S 1.65602 * 119.99823 * 179.97438 * 12 10 7 14 14 O 1.42091 * 104.28095 * 296.07398 * 13 12 10 15 15 O 1.42102 * 104.27468 * 63.93519 * 13 12 10 16 16 C 1.81406 * 104.44578 * 180.02562 * 13 12 10 17 17 C 1.52997 * 109.46863 * 180.02562 * 16 13 12 18 18 C 1.50701 * 109.47158 * 180.02562 * 17 16 13 19 19 H 1.08001 * 119.99791 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00044 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99989 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00087 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47289 * 89.99788 * 22 20 18 24 24 H 1.48501 * 109.47123 * 209.99817 * 22 20 18 25 25 H 1.48498 * 109.47045 * 329.99512 * 22 20 18 26 26 C 1.38235 * 120.00348 * 0.25878 * 5 4 3 27 27 C 1.38235 * 119.99577 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.47172 * 90.00165 * 1 2 3 29 29 H 1.08998 * 109.47803 * 209.99916 * 1 2 3 30 30 H 1.09006 * 109.47126 * 330.00219 * 1 2 3 31 31 H 1.07996 * 120.00027 * 359.97438 * 3 2 1 32 32 H 1.07992 * 120.00040 * 179.97438 * 4 3 2 33 33 H 1.09011 * 109.46562 * 329.99990 * 6 5 4 34 34 H 1.08998 * 109.47324 * 210.00609 * 6 5 4 35 35 H 1.08996 * 109.47315 * 59.99421 * 9 7 6 36 36 H 1.08997 * 109.47512 * 179.97438 * 9 7 6 37 37 H 1.09000 * 109.47240 * 299.99805 * 9 7 6 38 38 H 0.96696 * 114.00109 * 180.02562 * 11 10 7 39 39 H 1.08999 * 109.47065 * 300.00225 * 16 13 12 40 40 H 1.09004 * 109.46873 * 60.00246 * 16 13 12 41 41 H 1.09005 * 109.47464 * 300.00331 * 17 16 13 42 42 H 1.09004 * 109.47310 * 60.00348 * 17 16 13 43 43 H 0.96999 * 120.00081 * 180.02562 * 21 20 18 44 44 H 1.07995 * 120.00327 * 179.72651 * 26 5 4 45 45 H 1.07997 * 120.00638 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1970 -0.0005 5 6 4.2716 -0.0001 -0.0005 6 6 5.7787 -0.0003 -0.0017 7 6 6.2898 0.0004 1.4404 8 1 5.8556 -0.8412 1.9801 9 6 5.8856 1.3080 2.1241 10 6 7.7917 -0.1235 1.4410 11 8 8.3681 -1.3416 1.3740 12 7 8.5264 0.9353 1.5057 13 16 10.1768 0.7991 1.5071 14 8 10.4696 0.0973 2.7074 15 8 10.4832 0.2389 0.2376 16 6 10.7720 2.5096 1.6091 17 6 12.3020 2.5176 1.6175 18 6 12.7965 3.9385 1.7029 19 1 12.0902 4.7544 1.7472 20 6 14.1506 4.1970 1.7255 21 7 14.5822 5.4371 1.8005 22 14 15.3723 2.7860 1.6495 23 1 15.7036 2.4939 0.2318 24 1 16.6094 3.1624 2.3796 25 1 14.7749 1.5798 2.2769 26 6 3.5805 -1.1973 -0.0054 27 6 2.1980 -1.1972 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6582 2.1324 -0.0004 32 1 4.1205 2.1323 -0.0010 33 1 6.1416 0.8895 -0.5163 34 1 6.1415 -0.8905 -0.5155 35 1 4.7994 1.3976 2.1236 36 1 6.2494 1.3083 3.1516 37 1 6.3198 2.1496 1.5844 38 1 9.3348 -1.3201 1.3806 39 1 10.4108 3.0720 0.7481 40 1 10.4009 2.9694 2.5251 41 1 12.6636 1.9550 2.4783 42 1 12.6727 2.0579 0.7013 43 1 15.5349 5.6190 1.8160 44 1 4.1204 -2.1326 -0.0099 45 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097049136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:57 Heat of formation + Delta-G solvation = -86.128564 kcal Electronic energy + Delta-G solvation = -26549.517790 eV Core-core repulsion = 22659.333309 eV Total energy + Delta-G solvation = -3890.184481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 5.96 seconds Orbital eigenvalues (eV) -40.47283 -39.69286 -36.87881 -36.37304 -35.73368 -34.06386 -33.87057 -32.17755 -31.52659 -31.24903 -28.62369 -26.23998 -26.03436 -24.37788 -23.00667 -21.65174 -21.14856 -20.25914 -19.81972 -18.23410 -17.46197 -16.81696 -16.45220 -16.09410 -15.88003 -15.58723 -15.33549 -14.98694 -14.68583 -14.33690 -14.27288 -14.08192 -13.75759 -13.71594 -13.33086 -13.00436 -12.82304 -12.71125 -12.62834 -12.22181 -12.05208 -12.03281 -11.92530 -11.84795 -11.55766 -11.37794 -11.32532 -11.28697 -11.27094 -11.14464 -10.74736 -10.48380 -10.19589 -10.15296 -9.70908 -9.41141 -9.21456 -8.80966 -8.68934 -6.18889 -4.20618 0.45209 0.93464 1.09951 1.28094 2.64127 2.96303 3.24197 3.31532 3.35070 3.41393 3.55197 4.31305 4.33179 4.41064 4.54668 4.56750 4.61174 4.66334 4.72587 4.83491 4.92810 5.10417 5.12403 5.17622 5.20974 5.27662 5.40705 5.41708 5.46115 5.54168 5.54904 5.57569 5.65450 5.75125 5.78276 5.84136 6.10215 6.14738 6.21786 6.28222 6.31730 6.69756 6.75451 6.87488 7.02355 7.50231 8.33543 8.82328 9.40043 10.93307 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026502 B = 0.002165 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.254003 B =12931.810161 C =13576.530704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.120 4.120 4 C -0.105 4.105 5 C -0.084 4.084 6 C -0.076 4.076 7 C -0.025 4.025 8 H 0.109 0.891 9 C -0.141 4.141 10 C 0.493 3.507 11 O -0.499 6.499 12 N -0.982 5.982 13 S 2.497 3.503 14 O -0.983 6.983 15 O -0.983 6.983 16 C -0.526 4.526 17 C -0.010 4.010 18 C -0.520 4.520 19 H 0.080 0.920 20 C 0.073 3.927 21 N -0.893 5.893 22 Si 0.870 3.130 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.263 1.263 26 C -0.110 4.110 27 C -0.120 4.120 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.399 0.601 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.267 0.733 44 H 0.124 0.876 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.234 -12.664 -3.004 31.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C -0.138 4.138 4 C -0.123 4.123 5 C -0.085 4.085 6 C -0.114 4.114 7 C -0.047 4.047 8 H 0.127 0.873 9 C -0.198 4.198 10 C 0.273 3.727 11 O -0.294 6.294 12 N -0.843 5.843 13 S 2.601 3.399 14 O -0.972 6.972 15 O -0.972 6.972 16 C -0.662 4.662 17 C -0.049 4.049 18 C -0.559 4.559 19 H 0.099 0.901 20 C -0.130 4.130 21 N -0.531 5.531 22 Si 0.696 3.304 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.188 1.188 26 C -0.128 4.128 27 C -0.138 4.138 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.259 0.741 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.077 0.923 44 H 0.141 0.859 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -28.123 -12.963 -3.010 31.113 hybrid contribution 1.760 -0.488 -0.017 1.827 sum -26.363 -13.451 -3.027 29.751 Atomic orbital electron populations 1.20800 0.91335 1.02766 1.02296 1.19949 0.96056 0.93312 0.99675 1.21047 0.94184 0.97553 1.01026 1.21137 0.94104 0.97818 0.99253 1.19645 0.94500 0.93416 1.00895 1.20650 0.91744 1.04878 0.94140 1.20382 0.82652 1.02743 0.98878 0.87298 1.21846 1.01488 0.95323 1.01133 1.24261 0.96286 0.77909 0.74243 1.84980 1.27653 1.31446 1.85363 1.73952 1.30864 1.39477 1.40032 1.08114 0.75631 0.81271 0.74888 1.93624 1.84364 1.71378 1.47826 1.93624 1.84194 1.76837 1.42548 1.29582 1.08745 1.15998 1.11856 1.19504 0.86157 1.01298 0.97978 1.20809 0.92891 0.89912 1.52287 0.90145 1.24972 0.98296 0.95660 0.94109 1.69875 1.15026 1.18545 1.49640 0.86922 0.81208 0.83211 0.79076 1.19641 1.20651 1.18752 1.21084 0.94176 0.97667 0.99874 1.21015 0.94127 0.97522 1.01185 0.91229 0.91608 0.91537 0.86038 0.85496 0.89180 0.89811 0.91042 0.91715 0.90009 0.74148 0.84839 0.84808 0.94849 0.95286 0.92310 0.85851 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 10.01 36.00 0.36 -0.19 16 2 C -0.09 -0.61 5.88 -104.63 -0.62 -1.23 16 3 C -0.12 -0.84 9.70 -39.58 -0.38 -1.22 16 4 C -0.11 -0.77 7.96 -39.58 -0.32 -1.09 16 5 C -0.08 -0.64 4.71 -104.62 -0.49 -1.14 16 6 C -0.08 -0.61 4.82 -27.88 -0.13 -0.74 16 7 C -0.03 -0.23 2.82 -91.78 -0.26 -0.48 16 8 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 9 C -0.14 -1.19 8.25 37.15 0.31 -0.88 16 10 C 0.49 6.28 6.91 -13.45 -0.09 6.19 16 11 O -0.50 -6.57 13.48 -30.96 -0.42 -6.99 16 12 N -0.98 -14.34 9.60 32.47 0.31 -14.02 16 13 S 2.50 44.61 4.31 -107.50 -0.46 44.15 16 14 O -0.98 -19.52 17.07 -61.33 -1.05 -20.57 16 15 O -0.98 -19.32 17.07 -61.34 -1.05 -20.37 16 16 C -0.53 -10.10 6.12 37.16 0.23 -9.87 16 17 C -0.01 -0.24 4.05 -27.88 -0.11 -0.35 16 18 C -0.52 -14.61 9.66 -34.44 -0.33 -14.95 16 19 H 0.08 2.37 7.99 -52.49 -0.42 1.95 16 20 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 21 N -0.89 -27.00 13.96 55.43 0.77 -26.22 16 22 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 25 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 26 C -0.11 -0.79 9.70 -39.58 -0.38 -1.18 16 27 C -0.12 -0.83 9.70 -39.58 -0.38 -1.21 16 28 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.06 0.27 8.09 -51.93 -0.42 -0.15 16 30 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 31 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.13 0.80 8.04 -52.49 -0.42 0.38 16 33 H 0.09 0.74 8.09 -51.92 -0.42 0.32 16 34 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.07 0.50 6.27 -51.93 -0.33 0.17 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.74 7.79 -51.93 -0.40 0.34 16 38 H 0.40 5.61 5.36 53.48 0.29 5.90 16 39 H 0.13 2.35 8.14 -51.92 -0.42 1.93 16 40 H 0.13 2.36 8.14 -51.92 -0.42 1.94 16 41 H 0.03 0.80 7.20 -51.93 -0.37 0.43 16 42 H 0.03 0.69 7.57 -51.93 -0.39 0.29 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 45 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 LS Contribution 385.22 15.07 5.81 5.81 Total: -1.00 -34.56 385.22 -9.74 -44.31 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.28 Total: 3.39 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: -2.71 Total: -26.34 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 1.09 Total: -40.25 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -2.51 Total: -47.93 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 44.61 SS G_CDS: -0.46 Total: 44.15 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.56 -9.74 -44.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097049136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.822 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.96 seconds