Wall clock time and date at job start Tue Mar 31 2020 07:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38231 * 120.00264 * 2 1 4 4 C 1.38239 * 120.00080 * 180.02562 * 3 2 1 5 5 C 1.38233 * 119.99801 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00225 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47192 * 89.99528 * 6 5 4 8 8 H 1.09000 * 109.46737 * 55.00832 * 7 6 5 9 9 C 1.52990 * 109.47456 * 295.00719 * 7 6 5 10 10 C 1.50700 * 109.46977 * 175.00298 * 7 6 5 11 11 O 1.34924 * 120.00042 * 275.00258 * 10 7 6 12 12 N 1.29038 * 119.99985 * 95.00265 * 10 7 6 13 13 S 1.65602 * 119.99823 * 179.97438 * 12 10 7 14 14 O 1.42091 * 104.28095 * 296.07398 * 13 12 10 15 15 O 1.42102 * 104.27468 * 63.93519 * 13 12 10 16 16 C 1.81406 * 104.44578 * 180.02562 * 13 12 10 17 17 C 1.52997 * 109.46863 * 180.02562 * 16 13 12 18 18 C 1.50701 * 109.47158 * 180.02562 * 17 16 13 19 19 H 1.08001 * 119.99791 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00044 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99989 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00087 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47289 * 89.99788 * 22 20 18 24 24 H 1.48501 * 109.47123 * 209.99817 * 22 20 18 25 25 H 1.48498 * 109.47045 * 329.99512 * 22 20 18 26 26 C 1.38235 * 120.00348 * 0.25878 * 5 4 3 27 27 C 1.38235 * 119.99577 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.47172 * 90.00165 * 1 2 3 29 29 H 1.08998 * 109.47803 * 209.99916 * 1 2 3 30 30 H 1.09006 * 109.47126 * 330.00219 * 1 2 3 31 31 H 1.07996 * 120.00027 * 359.97438 * 3 2 1 32 32 H 1.07992 * 120.00040 * 179.97438 * 4 3 2 33 33 H 1.09011 * 109.46562 * 329.99990 * 6 5 4 34 34 H 1.08998 * 109.47324 * 210.00609 * 6 5 4 35 35 H 1.08996 * 109.47315 * 59.99421 * 9 7 6 36 36 H 1.08997 * 109.47512 * 179.97438 * 9 7 6 37 37 H 1.09000 * 109.47240 * 299.99805 * 9 7 6 38 38 H 0.96696 * 114.00109 * 180.02562 * 11 10 7 39 39 H 1.08999 * 109.47065 * 300.00225 * 16 13 12 40 40 H 1.09004 * 109.46873 * 60.00246 * 16 13 12 41 41 H 1.09005 * 109.47464 * 300.00331 * 17 16 13 42 42 H 1.09004 * 109.47310 * 60.00348 * 17 16 13 43 43 H 0.96999 * 120.00081 * 180.02562 * 21 20 18 44 44 H 1.07995 * 120.00327 * 179.72651 * 26 5 4 45 45 H 1.07997 * 120.00638 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1970 -0.0005 5 6 4.2716 -0.0001 -0.0005 6 6 5.7787 -0.0003 -0.0017 7 6 6.2898 0.0004 1.4404 8 1 5.8556 -0.8412 1.9801 9 6 5.8856 1.3080 2.1241 10 6 7.7917 -0.1235 1.4410 11 8 8.3681 -1.3416 1.3740 12 7 8.5264 0.9353 1.5057 13 16 10.1768 0.7991 1.5071 14 8 10.4696 0.0973 2.7074 15 8 10.4832 0.2389 0.2376 16 6 10.7720 2.5096 1.6091 17 6 12.3020 2.5176 1.6175 18 6 12.7965 3.9385 1.7029 19 1 12.0902 4.7544 1.7472 20 6 14.1506 4.1970 1.7255 21 7 14.5822 5.4371 1.8005 22 14 15.3723 2.7860 1.6495 23 1 15.7036 2.4939 0.2318 24 1 16.6094 3.1624 2.3796 25 1 14.7749 1.5798 2.2769 26 6 3.5805 -1.1973 -0.0054 27 6 2.1980 -1.1972 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6582 2.1324 -0.0004 32 1 4.1205 2.1323 -0.0010 33 1 6.1416 0.8895 -0.5163 34 1 6.1415 -0.8905 -0.5155 35 1 4.7994 1.3976 2.1236 36 1 6.2494 1.3083 3.1516 37 1 6.3198 2.1496 1.5844 38 1 9.3348 -1.3201 1.3806 39 1 10.4108 3.0720 0.7481 40 1 10.4009 2.9694 2.5251 41 1 12.6636 1.9550 2.4783 42 1 12.6727 2.0579 0.7013 43 1 15.5349 5.6190 1.8160 44 1 4.1204 -2.1326 -0.0099 45 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097049136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:56 Heat of formation + Delta-G solvation = -110.116555 kcal Electronic energy + Delta-G solvation = -26550.557987 eV Core-core repulsion = 22659.333309 eV Total energy + Delta-G solvation = -3891.224678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.44337 -40.30600 -38.37411 -37.41196 -36.91867 -35.97680 -34.86375 -33.55057 -32.83958 -31.73930 -29.17091 -28.02174 -26.87377 -25.14763 -23.54235 -23.34393 -21.85146 -21.20028 -20.95005 -19.73671 -19.20039 -18.11305 -17.61398 -17.16714 -16.58347 -16.42330 -16.34135 -16.19783 -16.02851 -15.66073 -15.42370 -14.97549 -14.84186 -14.52212 -14.18714 -14.07003 -13.93106 -13.85692 -13.56933 -13.42487 -13.36720 -13.13650 -13.08451 -13.04322 -12.73491 -12.66403 -12.30323 -12.23238 -12.05985 -12.00287 -11.87106 -11.79565 -11.74600 -11.66604 -11.38595 -11.31208 -10.87515 -9.71917 -9.32095 -8.39226 -6.45894 -0.97579 0.11611 0.50194 0.59623 1.29827 1.31326 1.41304 1.62635 1.66278 2.11729 2.26752 2.89348 2.93933 3.18580 3.54359 3.79400 3.82637 3.92845 4.01161 4.05108 4.09067 4.22611 4.25957 4.34381 4.41775 4.45878 4.48196 4.68737 4.77819 4.87578 4.90236 4.97551 4.97893 4.98157 5.00673 5.06844 5.13932 5.29659 5.37305 5.41357 5.47344 5.60354 5.78400 5.80785 5.92990 6.13026 6.21294 6.59984 7.18224 8.76166 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026502 B = 0.002165 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.254003 B =12931.810161 C =13576.530704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.098 4.098 3 C -0.131 4.131 4 C -0.114 4.114 5 C -0.092 4.092 6 C -0.072 4.072 7 C -0.023 4.023 8 H 0.132 0.868 9 C -0.140 4.140 10 C 0.496 3.504 11 O -0.496 6.496 12 N -0.980 5.980 13 S 2.522 3.478 14 O -1.004 7.004 15 O -1.002 7.002 16 C -0.534 4.534 17 C -0.018 4.018 18 C -0.530 4.530 19 H 0.052 0.948 20 C 0.015 3.985 21 N -0.937 5.937 22 Si 0.926 3.074 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.251 1.251 26 C -0.117 4.117 27 C -0.130 4.130 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.396 0.604 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.271 0.729 44 H 0.135 0.865 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.957 -14.544 -3.159 33.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.098 4.098 3 C -0.149 4.149 4 C -0.131 4.131 5 C -0.092 4.092 6 C -0.110 4.110 7 C -0.044 4.044 8 H 0.150 0.850 9 C -0.197 4.197 10 C 0.277 3.723 11 O -0.290 6.290 12 N -0.844 5.844 13 S 2.625 3.375 14 O -0.993 6.993 15 O -0.991 6.991 16 C -0.669 4.669 17 C -0.058 4.058 18 C -0.569 4.569 19 H 0.070 0.930 20 C -0.184 4.184 21 N -0.576 5.576 22 Si 0.749 3.251 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.175 1.175 26 C -0.135 4.135 27 C -0.148 4.148 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.255 0.745 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.080 0.920 44 H 0.153 0.847 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -29.849 -14.847 -3.167 33.488 hybrid contribution 2.101 0.101 0.018 2.103 sum -27.748 -14.746 -3.148 31.580 Atomic orbital electron populations 1.20835 0.90035 1.03458 1.02815 1.20260 0.97211 0.93304 0.99053 1.21274 0.94259 0.98300 1.01036 1.21289 0.94468 0.98080 0.99313 1.19606 0.94011 0.93778 1.01826 1.20616 0.92212 1.04948 0.93237 1.20662 0.79778 1.03948 1.00011 0.84998 1.21865 1.02546 0.94713 1.00614 1.25176 0.97650 0.77204 0.72229 1.85005 1.27393 1.31596 1.85034 1.73941 1.28180 1.39772 1.42489 1.07265 0.76623 0.79627 0.73967 1.93586 1.85425 1.71459 1.48828 1.93588 1.85240 1.76777 1.43508 1.29538 1.05755 1.18417 1.13177 1.19448 0.89595 0.98631 0.98085 1.21114 0.92746 0.91461 1.51595 0.93012 1.25869 1.00454 0.98229 0.93874 1.70001 1.15726 1.20711 1.51161 0.86006 0.78966 0.80281 0.79864 1.18420 1.19674 1.17480 1.21288 0.94548 0.98022 0.99650 1.21267 0.94237 0.98267 1.01011 0.90723 0.90861 0.90957 0.84883 0.84936 0.89555 0.89416 0.89343 0.92140 0.90750 0.74547 0.83634 0.83704 0.94770 0.94823 0.91989 0.84733 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 71.23 0.71 -0.15 16 2 C -0.10 -1.16 5.88 -19.87 -0.12 -1.28 16 3 C -0.13 -1.61 9.70 22.27 0.22 -1.39 16 4 C -0.11 -1.48 7.96 22.27 0.18 -1.30 16 5 C -0.09 -1.23 4.71 -19.87 -0.09 -1.32 16 6 C -0.07 -1.02 4.82 29.85 0.14 -0.87 16 7 C -0.02 -0.36 2.82 -11.54 -0.03 -0.39 16 8 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 9 C -0.14 -2.11 8.25 71.98 0.59 -1.51 16 10 C 0.50 11.70 6.91 88.52 0.61 12.32 16 11 O -0.50 -12.18 13.48 -68.11 -0.92 -13.10 16 12 N -0.98 -27.24 9.60 -166.06 -1.59 -28.83 16 13 S 2.52 87.61 4.31 -56.49 -0.24 87.36 16 14 O -1.00 -38.84 17.07 -124.03 -2.12 -40.96 16 15 O -1.00 -38.32 17.07 -124.02 -2.12 -40.44 16 16 C -0.53 -20.32 6.12 71.98 0.44 -19.88 16 17 C -0.02 -0.88 4.05 29.85 0.12 -0.76 16 18 C -0.53 -30.32 9.66 25.60 0.25 -30.07 16 19 H 0.05 3.16 7.99 -2.91 -0.02 3.13 16 20 C 0.01 0.86 5.47 84.65 0.46 1.32 16 21 N -0.94 -57.73 13.96 21.45 0.30 -57.43 16 22 Si 0.93 43.98 27.47 68.60 1.88 45.87 16 23 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 24 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 26 C -0.12 -1.45 9.70 22.27 0.22 -1.23 16 27 C -0.13 -1.53 9.70 22.27 0.22 -1.31 16 28 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.07 0.44 8.09 -2.39 -0.02 0.42 16 30 H 0.07 0.46 8.09 -2.38 -0.02 0.44 16 31 H 0.13 1.23 8.06 -2.91 -0.02 1.20 16 32 H 0.13 1.49 8.04 -2.91 -0.02 1.46 16 33 H 0.09 1.29 8.09 -2.38 -0.02 1.27 16 34 H 0.09 1.17 8.08 -2.39 -0.02 1.15 16 35 H 0.09 1.04 6.27 -2.39 -0.01 1.03 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.24 7.79 -2.39 -0.02 1.22 16 38 H 0.40 10.62 5.36 -79.09 -0.42 10.19 16 39 H 0.15 5.09 8.14 -2.39 -0.02 5.07 16 40 H 0.14 5.09 8.14 -2.39 -0.02 5.07 16 41 H 0.03 1.62 7.20 -2.38 -0.02 1.60 16 42 H 0.03 1.56 7.57 -2.38 -0.02 1.55 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.13 1.27 8.06 -2.91 -0.02 1.25 16 45 H 0.13 1.11 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -73.64 385.22 -0.38 -74.02 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.51 Total: 21.33 kcal Atomic # 6 Polarization: -51.75 SS G_CDS: 3.92 Total: -47.83 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -1.29 Total: -86.26 kcal Atomic # 8 Polarization: -89.34 SS G_CDS: -5.15 Total: -94.49 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.87 kcal Atomic # 16 Polarization: 87.61 SS G_CDS: -0.24 Total: 87.36 kcal Total: -73.64 -0.38 -74.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097049136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.101 kcal (2) G-P(sol) polarization free energy of solvation -73.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds