Wall clock time and date at job start Tue Mar 31 2020 07:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38257 * 120.00034 * 2 1 4 4 C 1.38216 * 120.00479 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99572 * 0.02562 * 4 3 2 6 6 C 1.38206 * 120.00230 * 359.95538 * 5 4 3 7 7 C 1.50702 * 120.00193 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47049 * 156.66666 * 7 6 5 9 9 O 1.42895 * 109.46929 * 36.66350 * 7 6 5 10 10 C 1.53001 * 109.47062 * 276.66701 * 7 6 5 11 11 N 1.46501 * 109.46846 * 180.99541 * 10 7 6 12 12 C 1.46494 * 119.99814 * 264.97031 * 11 10 7 13 13 C 1.50707 * 109.47568 * 270.28011 * 12 11 10 14 14 C 1.38230 * 119.99638 * 269.73101 * 13 12 11 15 15 C 1.38235 * 119.99588 * 179.76605 * 14 13 12 16 16 C 1.38237 * 120.00159 * 0.47921 * 15 14 13 17 17 C 1.38233 * 119.99820 * 359.79527 * 16 15 14 18 18 C 1.38232 * 119.99683 * 89.99871 * 13 12 11 19 19 C 1.34773 * 120.00024 * 85.25308 * 11 10 7 20 20 O 1.21684 * 120.00267 * 174.62906 * 19 11 10 21 21 C 1.46375 * 119.99937 * 354.62734 * 19 11 10 22 22 H 1.07997 * 120.00522 * 352.03316 * 21 19 11 23 23 C 1.40057 * 119.99935 * 172.03241 * 21 19 11 24 24 N 1.30674 * 119.99832 * 170.95473 * 23 21 19 25 25 Si 1.86795 * 119.99735 * 350.95726 * 23 21 19 26 26 H 1.48497 * 109.47397 * 84.65243 * 25 23 21 27 27 H 1.48506 * 109.47152 * 204.64989 * 25 23 21 28 28 H 1.48499 * 109.47279 * 324.64814 * 25 23 21 29 29 C 1.38212 * 120.00602 * 180.21276 * 2 1 3 30 30 H 1.08999 * 109.46825 * 90.00036 * 1 2 3 31 31 H 1.09001 * 109.46988 * 209.99512 * 1 2 3 32 32 H 1.08993 * 109.47328 * 329.99372 * 1 2 3 33 33 H 1.08002 * 119.99767 * 0.02562 * 3 2 1 34 34 H 1.07995 * 119.99967 * 179.97438 * 4 3 2 35 35 H 1.08000 * 119.99580 * 179.97438 * 5 4 3 36 36 H 0.96701 * 114.00197 * 300.00507 * 9 7 6 37 37 H 1.08994 * 109.47187 * 60.99101 * 10 7 6 38 38 H 1.09006 * 109.47023 * 300.99764 * 10 7 6 39 39 H 1.08999 * 109.47074 * 30.27865 * 12 11 10 40 40 H 1.08996 * 109.47442 * 150.27753 * 12 11 10 41 41 H 1.08000 * 120.00361 * 359.97438 * 14 13 12 42 42 H 1.08002 * 120.00108 * 180.24625 * 15 14 13 43 43 H 1.08004 * 120.00260 * 179.77192 * 16 15 14 44 44 H 1.08001 * 120.00237 * 179.97438 * 17 16 15 45 45 H 1.07999 * 120.00487 * 0.02562 * 18 13 12 46 46 H 0.96996 * 119.99659 * 180.02562 * 24 23 21 47 47 H 1.08009 * 119.99388 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 3.5807 -1.1968 -0.0012 7 6 4.3343 -2.5020 -0.0018 8 1 3.6990 -3.2885 0.4056 9 8 5.5088 -2.3741 0.8019 10 6 4.7333 -2.8598 -1.4348 11 7 5.4451 -4.1403 -1.4382 12 6 6.9093 -4.1645 -1.3970 13 6 7.4519 -4.1397 -2.8028 14 6 7.6871 -5.3251 -3.4738 15 6 8.1803 -5.3022 -4.7650 16 6 8.4477 -4.0942 -5.3815 17 6 8.2179 -2.9089 -4.7083 18 6 7.7198 -2.9316 -3.4190 19 6 4.7531 -5.2958 -1.4849 20 8 5.3435 -6.3550 -1.5864 21 6 3.2912 -5.2768 -1.4136 22 1 2.7731 -4.3548 -1.1950 23 6 2.5642 -6.4544 -1.6289 24 7 1.2791 -6.4811 -1.3934 25 14 3.4316 -7.9866 -2.2527 26 1 4.0237 -8.7217 -1.1062 27 1 2.4534 -8.8605 -2.9489 28 1 4.5074 -7.5959 -3.1989 29 6 2.1981 -1.1969 -0.0044 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6582 2.1326 0.0004 34 1 4.1203 2.1328 -0.0010 35 1 5.3517 0.0002 -0.0024 36 1 6.1214 -1.6907 0.4972 37 1 5.3828 -2.0819 -1.8361 38 1 3.8384 -2.9399 -2.0520 39 1 7.2719 -3.2928 -0.8522 40 1 7.2437 -5.0720 -0.8944 41 1 7.4823 -6.2690 -2.9906 42 1 8.3602 -6.2283 -5.2908 43 1 8.8365 -4.0764 -6.3889 44 1 8.4272 -1.9651 -5.1897 45 1 7.5405 -2.0056 -2.8929 46 1 0.7757 -7.2968 -1.5422 47 1 1.6581 -2.1322 -0.0083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:52 Heat of formation + Delta-G solvation = -50.598953 kcal Electronic energy + Delta-G solvation = -29535.778960 eV Core-core repulsion = 25647.524302 eV Total energy + Delta-G solvation = -3888.254658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -39.79839 -39.10505 -37.94212 -36.67717 -34.21197 -32.87478 -32.60893 -31.84890 -31.00717 -30.56613 -27.86815 -27.02440 -26.76793 -24.90924 -23.38320 -22.20344 -22.01670 -21.17985 -20.24761 -19.17177 -17.36812 -16.69036 -16.51674 -16.12169 -15.58986 -15.43566 -15.18608 -14.99860 -14.69545 -14.57773 -14.12245 -13.82247 -13.68267 -13.51659 -13.10028 -13.06306 -12.98128 -12.43835 -12.39603 -12.26369 -12.17035 -12.11948 -11.73963 -11.63698 -11.39561 -11.28192 -11.11415 -10.95514 -10.87040 -10.71394 -10.59168 -10.34084 -9.98786 -9.46522 -9.03178 -8.70276 -8.60289 -8.54649 -8.50939 -7.80844 -7.53366 -6.64840 -4.86959 1.41448 1.49604 1.64574 1.73320 3.44632 3.49941 3.75013 3.80201 3.96823 4.20342 4.36235 4.57546 4.71765 4.89337 4.90226 4.98712 5.12263 5.16686 5.20578 5.27060 5.37895 5.39567 5.41507 5.51667 5.54769 5.58619 5.65975 5.74740 5.79374 5.81786 5.85669 5.98837 6.12693 6.16065 6.20234 6.30532 6.35000 6.36639 6.42536 6.51813 6.68026 6.73258 6.80571 6.83558 6.93741 7.11093 7.12570 7.34145 7.59549 7.80509 7.88568 8.27216 8.67380 9.11152 10.03203 10.35477 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.008428 B = 0.004668 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3321.630872 B = 5997.212133 C = 8385.428947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.128 4.128 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.100 4.100 7 C 0.125 3.875 8 H 0.123 0.877 9 O -0.547 6.547 10 C 0.111 3.889 11 N -0.617 5.617 12 C 0.166 3.834 13 C -0.091 4.091 14 C -0.090 4.090 15 C -0.127 4.127 16 C -0.128 4.128 17 C -0.130 4.130 18 C -0.113 4.113 19 C 0.552 3.448 20 O -0.611 6.611 21 C -0.530 4.530 22 H 0.088 0.912 23 C 0.102 3.898 24 N -0.826 5.826 25 Si 0.967 3.033 26 H -0.280 1.280 27 H -0.326 1.326 28 H -0.260 1.260 29 C -0.103 4.103 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.360 0.640 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.131 0.869 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.282 0.718 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.876 14.495 -1.199 15.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.146 4.146 4 C -0.136 4.136 5 C -0.140 4.140 6 C -0.101 4.101 7 C 0.065 3.935 8 H 0.141 0.859 9 O -0.351 6.351 10 C -0.014 4.014 11 N -0.348 5.348 12 C 0.042 3.958 13 C -0.093 4.093 14 C -0.108 4.108 15 C -0.145 4.145 16 C -0.147 4.147 17 C -0.148 4.148 18 C -0.132 4.132 19 C 0.362 3.638 20 O -0.503 6.503 21 C -0.566 4.566 22 H 0.106 0.894 23 C -0.116 4.116 24 N -0.456 5.456 25 Si 0.801 3.199 26 H -0.207 1.207 27 H -0.258 1.258 28 H -0.186 1.186 29 C -0.121 4.121 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.206 0.794 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.148 0.852 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.132 0.868 46 H 0.092 0.908 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.685 13.434 -0.863 14.613 hybrid contribution 0.342 0.038 -0.686 0.767 sum 6.027 13.472 -1.549 14.840 Atomic orbital electron populations 1.20799 0.91250 1.02687 1.02435 1.19925 0.96105 0.93066 0.99332 1.20978 0.94258 0.97310 1.02066 1.21006 0.94277 0.97625 1.00699 1.20804 0.99429 0.92097 1.01658 1.20643 0.94545 0.95838 0.99064 1.21603 0.85844 0.93295 0.92801 0.85914 1.86708 1.32593 1.60369 1.55468 1.21814 0.98159 0.86183 0.95277 1.47404 1.03430 1.05690 1.78319 1.20044 0.82176 1.02534 0.91020 1.20564 0.97476 0.92947 0.98280 1.21323 0.96161 0.98962 0.94386 1.21160 1.00135 0.97690 0.95476 1.21044 1.01317 0.92812 0.99499 1.21010 1.00936 0.97720 0.95148 1.20979 0.99841 0.97184 0.95211 1.18317 0.88684 0.81121 0.75639 1.90165 1.70931 1.29730 1.59497 1.20793 0.88279 0.97706 1.49801 0.89406 1.25777 0.94498 1.00929 0.90445 1.69552 1.08255 1.30098 1.37670 0.85191 0.76542 0.78075 0.80123 1.20652 1.25817 1.18569 1.21077 0.93542 0.98228 0.99293 0.91106 0.91208 0.91880 0.86506 0.86395 0.86587 0.79359 0.92156 0.89246 0.91382 0.89926 0.85152 0.86598 0.86797 0.86737 0.86787 0.90836 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 10.01 36.00 0.36 -0.88 16 2 C -0.08 -1.09 5.88 -104.63 -0.62 -1.71 16 3 C -0.13 -1.49 9.70 -39.58 -0.38 -1.87 16 4 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 5 C -0.12 -1.49 9.33 -39.59 -0.37 -1.86 16 6 C -0.10 -1.45 4.99 -104.62 -0.52 -1.98 16 7 C 0.12 2.05 3.22 -27.88 -0.09 1.96 16 8 H 0.12 2.45 6.95 -51.93 -0.36 2.09 16 9 O -0.55 -8.47 12.33 -35.23 -0.43 -8.91 16 10 C 0.11 1.91 4.66 -4.04 -0.02 1.89 16 11 N -0.62 -12.56 2.36 -176.73 -0.42 -12.98 16 12 C 0.17 2.94 5.29 -5.19 -0.03 2.92 16 13 C -0.09 -1.55 5.46 -104.62 -0.57 -2.13 16 14 C -0.09 -1.63 9.57 -39.59 -0.38 -2.00 16 15 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 16 C -0.13 -1.78 10.05 -39.58 -0.40 -2.17 16 17 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 18 C -0.11 -1.65 9.70 -39.58 -0.38 -2.03 16 19 C 0.55 14.03 7.34 -12.99 -0.10 13.94 16 20 O -0.61 -16.83 10.93 5.20 0.06 -16.77 16 21 C -0.53 -14.24 8.71 -35.63 -0.31 -14.55 16 22 H 0.09 2.31 5.86 -52.49 -0.31 2.00 16 23 C 0.10 2.82 5.52 -17.36 -0.10 2.73 16 24 N -0.83 -22.83 13.92 55.55 0.77 -22.05 16 25 Si 0.97 25.29 25.90 -169.99 -4.40 20.88 16 26 H -0.28 -7.55 7.11 56.52 0.40 -7.14 16 27 H -0.33 -8.19 7.11 56.52 0.40 -7.78 16 28 H -0.26 -7.12 6.50 56.52 0.37 -6.76 16 29 C -0.10 -1.54 9.33 -39.58 -0.37 -1.91 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 32 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.12 1.14 6.67 -52.49 -0.35 0.79 16 36 H 0.36 4.07 7.40 45.56 0.34 4.41 16 37 H 0.06 0.87 8.03 -51.93 -0.42 0.45 16 38 H 0.09 1.71 6.77 -51.93 -0.35 1.36 16 39 H 0.07 1.00 7.45 -51.93 -0.39 0.61 16 40 H 0.08 1.62 7.44 -51.93 -0.39 1.23 16 41 H 0.13 2.62 7.40 -52.49 -0.39 2.23 16 42 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 44 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 46 H 0.28 7.24 8.29 -40.82 -0.34 6.90 16 47 H 0.13 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 388.02 15.07 5.85 5.85 Total: -1.00 -31.96 388.02 -10.04 -42.01 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.00 Total: 7.89 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -5.46 Total: -15.92 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.36 Total: -35.03 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.38 Total: -25.68 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -4.40 Total: 20.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.96 -10.04 -42.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.594 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds