Wall clock time and date at job start Tue Mar 31 2020 04:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86798 * 119.99684 * 2 1 4 4 H 1.48506 * 109.47287 * 269.99571 * 3 2 1 5 5 H 1.48501 * 109.47457 * 29.99816 * 3 2 1 6 6 H 1.48504 * 109.47296 * 149.99781 * 3 2 1 7 7 C 1.39862 * 120.00452 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00125 * 197.95248 * 7 2 1 9 9 C 1.41141 * 119.99736 * 17.94984 * 7 2 1 10 10 C 1.40880 * 120.15675 * 204.60244 * 9 7 2 11 11 C 1.36339 * 119.83909 * 180.02562 * 10 9 7 12 12 C 1.39572 * 120.15833 * 0.02562 * 11 10 9 13 13 N 1.38858 * 119.83764 * 179.97438 * 12 11 10 14 14 C 1.46504 * 119.99489 * 179.97438 * 13 12 11 15 15 C 1.53122 * 109.52124 * 155.00382 * 14 13 12 16 16 C 1.53034 * 109.27827 * 177.56181 * 15 14 13 17 17 N 1.46846 * 109.52157 * 300.81665 * 16 15 14 18 18 C 1.46901 * 110.99834 * 185.83743 * 17 16 15 19 19 C 1.50705 * 109.47058 * 170.00301 * 18 17 16 20 20 C 1.38671 * 120.41921 * 90.00232 * 19 18 17 21 21 C 1.38622 * 118.42200 * 180.02562 * 20 19 18 22 22 C 1.38230 * 119.16271 * 0.02562 * 21 20 19 23 23 N 1.31856 * 120.76196 * 359.97438 * 22 21 20 24 24 C 1.31894 * 121.72358 * 359.70600 * 23 22 21 25 25 C 1.46853 * 111.19716 * 61.74715 * 17 16 15 26 26 C 1.53040 * 109.51973 * 298.25583 * 25 17 16 27 27 C 1.39559 * 120.31615 * 0.25573 * 12 11 10 28 28 C 1.36339 * 120.16084 * 359.48300 * 27 12 11 29 29 H 0.97003 * 120.00130 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.08336 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.91997 * 179.97438 * 11 10 9 32 32 H 0.96998 * 120.00457 * 0.02562 * 13 12 11 33 33 H 1.09000 * 109.52233 * 34.87790 * 14 13 12 34 34 H 1.09000 * 109.50193 * 57.61609 * 15 14 13 35 35 H 1.09000 * 109.50165 * 297.50551 * 15 14 13 36 36 H 1.09001 * 109.46129 * 180.80856 * 16 15 14 37 37 H 1.08993 * 109.45629 * 60.82984 * 16 15 14 38 38 H 1.09001 * 109.47135 * 50.00687 * 18 17 16 39 39 H 1.08996 * 109.47722 * 290.00562 * 18 17 16 40 40 H 1.08005 * 120.78605 * 359.97438 * 20 19 18 41 41 H 1.08004 * 120.42209 * 180.02562 * 21 20 19 42 42 H 1.07995 * 119.61909 * 179.97438 * 22 21 20 43 43 H 1.07994 * 119.61529 * 180.31225 * 24 23 22 44 44 H 1.08998 * 109.46331 * 58.26755 * 25 17 16 45 45 H 1.08996 * 109.46109 * 178.23761 * 25 17 16 46 46 H 1.08994 * 109.50087 * 299.23750 * 26 25 17 47 47 H 1.08998 * 109.53259 * 179.14082 * 26 25 17 48 48 H 1.07996 * 119.92087 * 179.71982 * 27 12 11 49 49 H 1.08006 * 120.08424 * 180.23463 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4905 2.0465 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5405 1.4403 0.7001 7 6 2.0084 -1.2112 0.0005 8 1 3.0489 -1.2338 0.2888 9 6 1.3543 -2.4039 -0.3756 10 6 1.8268 -3.6471 0.0891 11 6 1.1902 -4.7953 -0.2787 12 6 0.0734 -4.7412 -1.1141 13 7 -0.5695 -5.9147 -1.4850 14 6 -1.7424 -5.8619 -2.3612 15 6 -1.8841 -7.1915 -3.1073 16 6 -3.1444 -7.1525 -3.9745 17 7 -4.3185 -6.9207 -3.1235 18 6 -5.5602 -7.0148 -3.9028 19 6 -6.7416 -7.0174 -2.9671 20 6 -7.3436 -5.8255 -2.5929 21 6 -8.4272 -5.8762 -1.7298 22 6 -8.8681 -7.1042 -1.2735 23 7 -8.2710 -8.2178 -1.6505 24 6 -7.2417 -8.2079 -2.4752 25 6 -4.2271 -5.6277 -2.4333 26 6 -2.9990 -5.6212 -1.5202 27 6 -0.3967 -3.5137 -1.5830 28 6 0.2267 -2.3571 -1.2190 29 1 -0.4850 0.8401 -0.0004 30 1 2.6911 -3.6906 0.7353 31 1 1.5516 -5.7491 0.0765 32 1 -0.2425 -6.7694 -1.1634 33 1 -1.6236 -5.0515 -3.0804 34 1 -1.9626 -8.0062 -2.3874 35 1 -1.0110 -7.3480 -3.7409 36 1 -3.2559 -8.1031 -4.4960 37 1 -3.0590 -6.3463 -4.7030 38 1 -5.5553 -7.9367 -4.4843 39 1 -5.6322 -6.1608 -4.5763 40 1 -6.9764 -4.8802 -2.9645 41 1 -8.9206 -4.9676 -1.4177 42 1 -9.7113 -7.1522 -0.6006 43 1 -6.7816 -9.1407 -2.7656 44 1 -4.1367 -4.8288 -3.1692 45 1 -5.1250 -5.4709 -1.8356 46 1 -3.0952 -6.4111 -0.7753 47 1 -2.9224 -4.6561 -1.0193 48 1 -1.2587 -3.4795 -2.2327 49 1 -0.1405 -1.4075 -1.5796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097139335.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:47 Heat of formation + Delta-G solvation = 61.184109 kcal Electronic energy + Delta-G solvation = -28026.684146 eV Core-core repulsion = 24338.714090 eV Total energy + Delta-G solvation = -3687.970056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.185 amu Computer time = 4.18 seconds Orbital eigenvalues (eV) -40.56639 -39.22093 -37.72666 -35.55659 -33.74022 -32.76279 -32.08889 -30.88676 -30.59231 -29.43935 -28.30302 -26.30494 -24.39442 -23.96573 -23.19340 -22.76548 -21.72047 -21.09061 -20.10667 -19.43199 -17.32472 -17.20663 -16.60764 -16.41396 -16.08630 -15.66327 -15.13629 -14.91632 -14.75245 -14.34382 -14.07542 -13.86195 -13.70916 -13.48947 -13.29943 -13.05443 -12.82093 -12.50117 -12.47729 -12.25897 -11.94380 -11.89376 -11.64443 -11.47735 -11.22322 -11.18207 -11.03690 -10.73819 -10.63298 -10.39857 -10.31861 -10.02583 -9.69808 -9.67695 -9.27515 -9.26525 -9.21471 -8.52469 -8.49482 -7.48720 -6.63972 -6.37500 -4.02620 0.84418 1.02481 2.91629 3.10381 3.14946 3.18384 3.36005 3.44234 3.89209 4.05483 4.19635 4.24618 4.45714 4.54447 4.71340 4.72924 4.75630 4.81841 4.95411 5.04512 5.14015 5.18180 5.30802 5.38224 5.43493 5.52491 5.56950 5.65256 5.68015 5.76678 5.82935 5.85288 5.95643 6.02811 6.12827 6.26133 6.27958 6.35066 6.43996 6.53614 6.85307 6.91844 6.94693 6.96642 7.20916 7.36483 7.57330 7.69752 7.73579 7.85107 8.15789 8.30519 8.51167 8.72114 8.81752 9.06698 9.16058 10.37790 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015148 B = 0.002276 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.956449 B =12297.007786 C =13443.771124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.467 4.467 8 H 0.072 0.928 9 C 0.073 3.927 10 C -0.186 4.186 11 C -0.160 4.160 12 C 0.095 3.905 13 N -0.756 5.756 14 C 0.165 3.835 15 C -0.122 4.122 16 C 0.062 3.938 17 N -0.533 5.533 18 C 0.097 3.903 19 C -0.126 4.126 20 C -0.070 4.070 21 C -0.172 4.172 22 C 0.095 3.905 23 N -0.487 5.487 24 C 0.117 3.883 25 C 0.055 3.945 26 C -0.131 4.131 27 C -0.165 4.165 28 C -0.124 4.124 29 H 0.275 0.725 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.383 0.617 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.034 0.966 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.685 -12.140 -8.383 20.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.498 4.498 8 H 0.090 0.910 9 C 0.070 3.930 10 C -0.206 4.206 11 C -0.182 4.182 12 C -0.002 4.002 13 N -0.390 5.390 14 C 0.058 3.942 15 C -0.160 4.160 16 C -0.066 4.066 17 N -0.258 5.258 18 C -0.031 4.031 19 C -0.128 4.128 20 C -0.097 4.097 21 C -0.192 4.192 22 C -0.062 4.062 23 N -0.195 5.195 24 C -0.040 4.040 25 C -0.073 4.073 26 C -0.170 4.170 27 C -0.187 4.187 28 C -0.144 4.144 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.216 0.784 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.171 0.829 43 H 0.172 0.828 44 H 0.052 0.948 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.105 0.895 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.291 -13.037 -7.798 21.554 hybrid contribution 0.719 2.074 -0.617 2.280 sum -14.573 -10.963 -8.415 20.084 Atomic orbital electron populations 1.69858 1.07334 1.28526 1.37858 1.25785 0.94656 1.00847 0.92768 0.86416 0.80502 0.81266 0.79051 1.19582 1.20605 1.18868 1.19368 0.97911 0.91357 1.41165 0.90968 1.17497 0.92445 0.91990 0.91045 1.20546 1.02669 0.92632 1.04781 1.19816 0.98015 0.97042 1.03365 1.17342 0.95516 0.85724 1.01569 1.43920 1.32219 1.05794 1.57021 1.20591 0.85595 0.96498 0.91558 1.21839 0.96522 0.98446 0.99212 1.22031 0.89699 1.00786 0.94131 1.61983 1.00913 1.33183 1.29691 1.20940 0.87196 1.02048 0.92952 1.20753 0.97671 0.94311 1.00103 1.21562 0.94377 0.98247 0.95468 1.22144 0.98124 0.99739 0.99220 1.22769 0.98351 0.87883 0.97237 1.67716 1.08821 1.31451 1.11558 1.22634 0.91701 0.97589 0.92072 1.22183 0.99493 0.88658 0.96999 1.22116 0.93490 1.02961 0.98449 1.20091 1.01804 0.91946 1.04826 1.20932 0.98211 0.96405 0.98872 0.91394 0.89109 0.89631 0.78415 0.91414 0.90952 0.91063 0.90546 0.94609 0.89538 0.93690 0.85038 0.84770 0.82900 0.82826 0.94801 0.90773 0.91416 0.90761 0.89487 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.46 10.97 55.54 0.61 -20.85 16 2 C 0.07 1.92 5.13 -17.34 -0.09 1.84 16 3 Si 0.90 19.30 29.59 -169.99 -5.03 14.27 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.47 -12.72 9.03 -37.87 -0.34 -13.06 16 8 H 0.07 1.91 7.91 -52.49 -0.41 1.49 16 9 C 0.07 1.98 5.57 -106.79 -0.60 1.39 16 10 C -0.19 -4.63 9.74 -39.27 -0.38 -5.01 16 11 C -0.16 -3.60 9.82 -39.77 -0.39 -3.99 16 12 C 0.10 2.05 6.65 -83.69 -0.56 1.49 16 13 N -0.76 -12.86 5.22 -51.91 -0.27 -13.13 16 14 C 0.16 2.37 2.20 -67.81 -0.15 2.22 16 15 C -0.12 -1.37 5.57 -26.65 -0.15 -1.52 16 16 C 0.06 0.59 5.46 -3.84 -0.02 0.57 16 17 N -0.53 -5.44 4.65 -236.11 -1.10 -6.54 16 18 C 0.10 0.81 5.14 -4.97 -0.03 0.78 16 19 C -0.13 -1.16 4.89 -104.48 -0.51 -1.67 16 20 C -0.07 -0.61 8.05 -39.28 -0.32 -0.93 16 21 C -0.17 -1.42 10.11 -39.44 -0.40 -1.82 16 22 C 0.09 0.86 11.18 -17.54 -0.20 0.67 16 23 N -0.49 -5.36 10.36 -13.25 -0.14 -5.50 16 24 C 0.12 1.16 10.86 -17.55 -0.19 0.97 16 25 C 0.05 0.64 5.18 -3.83 -0.02 0.62 16 26 C -0.13 -1.86 5.62 -26.65 -0.15 -2.01 16 27 C -0.16 -3.81 8.81 -39.77 -0.35 -4.16 16 28 C -0.12 -3.24 8.64 -39.26 -0.34 -3.58 16 29 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 30 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 31 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.38 5.90 8.60 -40.82 -0.35 5.55 16 33 H 0.07 1.08 6.43 -51.93 -0.33 0.75 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.60 8.02 -51.93 -0.42 0.19 16 37 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.59 7.94 -51.93 -0.41 0.18 16 39 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 40 H 0.13 1.00 7.99 -52.48 -0.42 0.58 16 41 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.87 5.77 -51.93 -0.30 0.57 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.07 1.24 7.73 -51.93 -0.40 0.84 16 48 H 0.09 1.84 6.06 -52.49 -0.32 1.52 16 49 H 0.12 3.18 6.16 -52.48 -0.32 2.85 16 LS Contribution 389.76 15.07 5.87 5.87 Total: -1.00 -29.53 389.76 -12.70 -42.22 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -7.47 Total: 10.86 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: -5.17 Total: -27.21 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -0.90 Total: -46.02 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.53 -12.70 -42.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097139335.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.409 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.18 seconds