Wall clock time and date at job start Tue Mar 31 2020 06:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47195 * 2 1 4 4 H 1.08996 * 109.46822 * 55.00310 * 3 2 1 5 5 C 1.50701 * 109.46932 * 175.00054 * 3 2 1 6 6 H 1.07999 * 119.99796 * 119.72433 * 5 3 2 7 7 C 1.37878 * 119.99887 * 300.00150 * 5 3 2 8 8 N 1.31512 * 120.00232 * 359.72319 * 7 5 3 9 9 Si 1.86807 * 119.99629 * 179.72676 * 7 5 3 10 10 H 1.48498 * 109.47131 * 89.99811 * 9 7 5 11 11 H 1.48496 * 109.46789 * 209.99727 * 9 7 5 12 12 H 1.48503 * 109.47044 * 329.99802 * 9 7 5 13 13 N 1.46494 * 109.46666 * 295.00192 * 3 2 1 14 14 C 1.34776 * 120.00361 * 85.00264 * 13 3 2 15 15 O 1.21594 * 119.99514 * 359.97438 * 14 13 3 16 16 N 1.34777 * 120.00278 * 179.97438 * 14 13 3 17 17 C 1.40175 * 119.99943 * 175.44575 * 16 14 13 18 18 C 1.38837 * 120.00351 * 34.74039 * 17 16 14 19 19 C 1.38056 * 120.01163 * 179.74729 * 18 17 16 20 20 C 1.38880 * 120.02034 * 0.54987 * 19 18 17 21 21 N 1.40084 * 119.99825 * 179.72279 * 20 19 18 22 22 C 1.34773 * 120.00107 * 215.09046 * 21 20 19 23 23 C 1.50703 * 120.00062 * 175.44317 * 22 21 20 24 24 O 1.21299 * 120.00170 * 355.43675 * 22 21 20 25 25 C 1.38844 * 120.00296 * 359.70363 * 20 19 18 26 26 C 1.38160 * 119.98913 * 0.02562 * 25 20 19 27 27 Cl 1.73609 * 120.00899 * 179.97438 * 26 25 20 28 28 H 1.09004 * 109.47047 * 299.99709 * 1 2 3 29 29 H 1.08992 * 109.47181 * 59.99921 * 1 2 3 30 30 H 1.09002 * 109.47214 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46926 * 239.99660 * 2 1 3 32 32 H 1.09002 * 109.47229 * 120.00051 * 2 1 3 33 33 H 0.97000 * 119.99962 * 180.02562 * 8 7 5 34 34 H 0.97003 * 119.99889 * 264.99445 * 13 3 2 35 35 H 0.96996 * 119.99984 * 355.44369 * 16 14 13 36 36 H 1.08005 * 119.99288 * 0.02562 * 18 17 16 37 37 H 1.08004 * 119.98914 * 180.25544 * 19 18 17 38 38 H 0.96995 * 120.00053 * 35.08684 * 21 20 19 39 39 H 1.09001 * 109.46882 * 89.99918 * 23 22 21 40 40 H 1.09006 * 109.46849 * 209.99436 * 23 22 21 41 41 H 1.08991 * 109.47128 * 329.99556 * 23 22 21 42 42 H 1.08008 * 120.00159 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1474 1.8849 -0.6544 7 6 4.1433 0.8783 1.2280 8 7 3.4060 0.3418 2.1756 9 14 6.0053 0.8737 1.3777 10 1 6.4487 2.1064 2.0771 11 1 6.4366 -0.3174 2.1526 12 1 6.6108 0.8284 0.0225 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3415 2.6318 -0.4319 16 7 0.0787 3.2673 -2.5184 17 6 -1.2197 3.7727 -2.6722 18 6 -1.8846 4.3214 -1.5839 19 6 -3.1613 4.8239 -1.7364 20 6 -3.7857 4.7705 -2.9758 21 7 -5.0834 5.2753 -3.1286 22 6 -5.9451 4.6745 -3.9730 23 6 -7.3712 5.1536 -4.0614 24 8 -5.5728 3.7482 -4.6619 25 6 -3.1235 4.2171 -4.0635 26 6 -1.8436 3.7192 -3.9125 27 17 -1.0154 3.0266 -5.2720 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8291 -0.0561 2.9526 34 1 2.2719 2.1231 -1.9978 35 1 0.7206 3.3515 -3.2407 36 1 -1.4011 4.3592 -0.6189 37 1 -3.6766 5.2545 -0.8905 38 1 -5.3619 6.0572 -2.6267 39 1 -7.4476 5.9282 -4.8245 40 1 -8.0195 4.3181 -4.3256 41 1 -7.6779 5.5610 -3.0981 42 1 -3.6089 4.1760 -5.0275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097163285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:36 Heat of formation + Delta-G solvation = -44.343574 kcal Electronic energy + Delta-G solvation = -26743.135380 eV Core-core repulsion = 22749.178783 eV Total energy + Delta-G solvation = -3993.956597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.81940 -39.96072 -38.36339 -36.53463 -35.76540 -34.75998 -33.73138 -32.38820 -31.04950 -30.77938 -30.37421 -28.00184 -26.69479 -23.67071 -23.08011 -22.40522 -21.13950 -20.44496 -19.54001 -18.28149 -18.11159 -17.51647 -17.15437 -16.08711 -15.75269 -15.26243 -15.05205 -14.96076 -14.60119 -14.31984 -14.04778 -13.73468 -13.55036 -13.33418 -13.18555 -12.83402 -12.66004 -12.63145 -12.23260 -11.87903 -11.57125 -11.52213 -11.26322 -11.04497 -10.96727 -10.87903 -10.69808 -10.33176 -10.21893 -10.15483 -9.72936 -9.50330 -9.27960 -9.05210 -8.79318 -8.51500 -7.97738 -7.61080 -6.13884 -4.23095 1.03059 1.27510 2.07544 2.28156 2.79411 3.14158 3.23876 3.30995 3.33253 3.51871 3.92088 4.30981 4.38078 4.76627 4.84425 4.89663 4.95130 5.01304 5.17898 5.25125 5.30389 5.41783 5.63618 5.88928 6.06494 6.21497 6.35750 6.42760 6.50078 6.57900 6.68199 6.98688 7.00236 7.08579 7.13738 7.33286 7.37214 7.44209 7.63563 7.81000 7.85077 7.95605 8.17432 8.71103 8.81640 9.20917 9.44911 10.91504 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022283 B = 0.002524 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.242321 B =11089.732266 C =11583.479254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.716 5.716 14 C 0.695 3.305 15 O -0.576 6.576 16 N -0.693 5.693 17 C 0.184 3.816 18 C -0.092 4.092 19 C -0.117 4.117 20 C 0.120 3.880 21 N -0.670 5.670 22 C 0.507 3.493 23 C -0.170 4.170 24 O -0.525 6.525 25 C -0.093 4.093 26 C -0.057 4.057 27 Cl -0.065 7.065 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.021 0.979 31 H 0.031 0.969 32 H 0.099 0.901 33 H 0.265 0.735 34 H 0.386 0.614 35 H 0.404 0.596 36 H 0.160 0.840 37 H 0.133 0.867 38 H 0.412 0.588 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.483 12.297 -11.816 23.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.367 5.367 14 C 0.396 3.604 15 O -0.453 6.453 16 N -0.341 5.341 17 C 0.085 3.915 18 C -0.114 4.114 19 C -0.138 4.138 20 C 0.025 3.975 21 N -0.316 5.316 22 C 0.295 3.705 23 C -0.230 4.230 24 O -0.401 6.401 25 C -0.114 4.114 26 C -0.088 4.088 27 Cl -0.037 7.037 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.219 0.781 35 H 0.240 0.760 36 H 0.177 0.823 37 H 0.151 0.849 38 H 0.248 0.752 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.785 11.335 -11.317 23.201 hybrid contribution 1.510 0.244 -0.477 1.602 sum -15.275 11.580 -11.794 22.506 Atomic orbital electron populations 1.21812 0.98219 0.97971 1.01264 1.21957 0.92733 0.99828 1.02231 1.18738 0.94027 0.88922 0.79816 0.93115 1.21218 0.90619 1.39234 1.06215 0.92078 1.24872 0.98603 0.94765 0.95391 1.69895 1.35131 1.37638 1.09196 0.86449 0.84825 0.77638 0.78181 1.20576 1.21073 1.19879 1.45846 1.13192 1.58257 1.19380 1.16063 0.83729 0.78617 0.82025 1.90875 1.51749 1.64768 1.37935 1.42910 1.11518 1.61120 1.18595 1.17297 0.85844 0.96028 0.92298 1.21240 0.94596 0.95934 0.99589 1.20901 0.95820 1.01963 0.95098 1.17467 0.85031 1.01717 0.93280 1.43542 1.10874 1.31969 1.45234 1.21035 0.88094 0.82311 0.79053 1.21884 0.92277 1.04344 1.04493 1.90763 1.78820 1.28536 1.41950 1.20815 0.91521 0.99413 0.99677 1.20517 0.94000 1.05666 0.88594 1.98354 1.78191 1.83360 1.43764 0.93148 0.94270 0.95991 0.95065 0.88281 0.92530 0.78138 0.76025 0.82295 0.84931 0.75233 0.88557 0.88462 0.89867 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16 3 C 0.29 7.06 2.24 -69.08 -0.15 6.91 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -13.83 8.73 -34.44 -0.30 -14.13 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.35 11.31 55.43 0.63 -23.72 16 9 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.72 -14.55 5.03 -59.81 -0.30 -14.85 16 14 C 0.69 13.59 6.98 -86.92 -0.61 12.99 16 15 O -0.58 -12.83 10.89 5.28 0.06 -12.78 16 16 N -0.69 -10.89 5.06 -14.16 -0.07 -10.97 16 17 C 0.18 2.80 6.31 -83.56 -0.53 2.27 16 18 C -0.09 -1.36 8.69 -39.43 -0.34 -1.70 16 19 C -0.12 -1.36 9.96 -39.41 -0.39 -1.75 16 20 C 0.12 1.38 6.30 -83.62 -0.53 0.86 16 21 N -0.67 -5.40 5.34 -9.83 -0.05 -5.45 16 22 C 0.51 4.63 7.78 -10.99 -0.09 4.54 16 23 C -0.17 -0.73 10.31 36.01 0.37 -0.36 16 24 O -0.53 -7.31 14.54 5.54 0.08 -7.23 16 25 C -0.09 -1.24 8.47 -39.39 -0.33 -1.58 16 26 C -0.06 -0.81 6.33 -39.35 -0.25 -1.06 16 27 Cl -0.07 -0.86 27.95 -51.86 -1.45 -2.31 16 28 H 0.05 1.20 7.84 -51.93 -0.41 0.80 16 29 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 2.65 5.96 -51.93 -0.31 2.34 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.39 6.85 8.56 -40.82 -0.35 6.50 16 35 H 0.40 5.39 8.09 -40.82 -0.33 5.06 16 36 H 0.16 2.62 6.19 -52.48 -0.33 2.29 16 37 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.41 1.71 8.82 -40.82 -0.36 1.35 16 39 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.15 2.05 6.22 -52.48 -0.33 1.72 16 LS Contribution 362.04 15.07 5.46 5.46 Total: -1.00 -32.46 362.04 -8.92 -41.37 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -5.17 Total: 12.48 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -3.07 Total: 2.64 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.20 Total: -54.99 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: 0.14 Total: -20.00 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.45 Total: -2.31 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.46 -8.92 -41.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097163285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.970 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds