Wall clock time and date at job start Tue Mar 31 2020 06:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86806 * 119.99849 * 2 1 4 4 H 1.48499 * 109.47323 * 274.98619 * 3 2 1 5 5 H 1.48500 * 109.47091 * 34.99036 * 3 2 1 6 6 H 1.48507 * 109.46901 * 154.98773 * 3 2 1 7 7 C 1.40044 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00113 * 186.15148 * 7 2 1 9 9 C 1.46376 * 120.00244 * 6.14423 * 7 2 1 10 10 O 1.21689 * 119.99679 * 353.94124 * 9 7 2 11 11 N 1.34777 * 120.00015 * 173.94293 * 9 7 2 12 12 C 1.46500 * 119.99593 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47197 * 180.02562 * 12 11 9 14 14 C 1.34732 * 125.66977 * 89.99315 * 13 12 11 15 15 C 1.40921 * 107.03718 * 180.02562 * 14 13 12 16 16 C 1.35950 * 106.74215 * 0.02562 * 15 14 13 17 17 C 1.47790 * 125.93578 * 180.02562 * 16 15 14 18 18 C 1.39610 * 120.14687 * 359.97438 * 17 16 15 19 19 C 1.37926 * 119.85171 * 180.02562 * 18 17 16 20 20 C 1.38379 * 120.14909 * 359.97438 * 19 18 17 21 21 C 1.38334 * 120.29807 * 0.02562 * 20 19 18 22 22 C 1.50698 * 119.92897 * 180.02562 * 21 20 19 23 23 F 1.39897 * 109.46801 * 0.02562 * 22 21 20 24 24 F 1.39899 * 109.47078 * 120.00213 * 22 21 20 25 25 F 1.39903 * 109.46989 * 240.00037 * 22 21 20 26 26 C 1.37985 * 120.14444 * 359.72355 * 21 20 19 27 27 O 1.34310 * 125.66217 * 269.69574 * 13 12 11 28 28 H 0.97001 * 119.99818 * 359.97438 * 1 2 3 29 29 H 0.96990 * 120.00561 * 359.97438 * 11 9 7 30 30 H 1.09000 * 109.47405 * 59.99909 * 12 11 9 31 31 H 1.09006 * 109.47007 * 299.99427 * 12 11 9 32 32 H 1.08005 * 126.47909 * 0.02562 * 14 13 12 33 33 H 1.07999 * 126.63534 * 180.02562 * 15 14 13 34 34 H 1.08007 * 120.06969 * 359.97438 * 18 17 16 35 35 H 1.08009 * 119.92294 * 180.02562 * 19 18 17 36 36 H 1.07998 * 119.85261 * 180.02562 * 20 19 18 37 37 H 1.07999 * 120.07658 * 180.27075 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1074 -1.3947 5 1 1.4948 2.6200 0.8029 6 1 3.5871 1.4121 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0824 -1.2155 0.0997 9 6 1.2815 -2.4768 -0.1368 10 8 0.0646 -2.4827 -0.1387 11 7 1.9612 -3.6340 -0.2601 12 6 1.2350 -4.8990 -0.3970 13 6 2.2199 -6.0333 -0.5168 14 6 2.7315 -6.7412 0.5091 15 6 3.6055 -7.6979 -0.0447 16 6 3.5792 -7.5188 -1.3921 17 6 4.3440 -8.3007 -2.3860 18 6 5.1889 -9.3307 -1.9682 19 6 5.9002 -10.0561 -2.9010 20 6 5.7775 -9.7655 -4.2484 21 6 4.9421 -8.7463 -4.6692 22 6 4.8143 -8.4372 -6.1386 23 9 5.6290 -9.3075 -6.8707 24 9 3.4828 -8.6008 -6.5354 25 9 5.2121 -7.1167 -6.3736 26 6 4.2209 -8.0161 -3.7469 27 8 2.7293 -6.5101 -1.6644 28 1 -0.4850 0.8401 0.0004 29 1 2.9311 -3.6294 -0.2589 30 1 0.6099 -4.8644 -1.2893 31 1 0.6074 -5.0545 0.4806 32 1 2.5130 -6.6017 1.5576 33 1 4.1844 -8.4316 0.4966 34 1 5.2859 -9.5582 -0.9169 35 1 6.5539 -10.8535 -2.5792 36 1 6.3364 -10.3369 -4.9747 37 1 3.5657 -7.2235 -4.0769 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097163962.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:01 Heat of formation + Delta-G solvation = -173.020233 kcal Electronic energy + Delta-G solvation = -27485.412808 eV Core-core repulsion = 22778.326635 eV Total energy + Delta-G solvation = -4707.086172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.087 amu Computer time = 4.36 seconds Orbital eigenvalues (eV) -51.26927 -48.78101 -48.74637 -43.68994 -40.33013 -39.42333 -35.66494 -34.55854 -34.47838 -33.35153 -32.74858 -30.64602 -28.49459 -27.18080 -26.46711 -23.76251 -23.66362 -22.22982 -21.86419 -21.36557 -19.75945 -19.59203 -19.44944 -19.38246 -17.76597 -17.53050 -17.31319 -17.14712 -16.33678 -16.14378 -15.95346 -15.71377 -15.65638 -15.43293 -15.17433 -15.15635 -14.98562 -14.89938 -14.76592 -14.34004 -14.07651 -14.00170 -13.88689 -13.73895 -13.61344 -13.16599 -12.93664 -12.75184 -12.62201 -12.57151 -12.29442 -12.01356 -11.17778 -10.95839 -10.76461 -10.30692 -9.97564 -9.63557 -9.00203 -8.32907 -6.89353 -0.46944 -0.09439 0.81929 1.39879 1.40983 1.54604 1.56314 1.58709 1.67720 2.24308 2.42752 2.49906 2.60012 2.90123 3.14246 3.30843 3.36431 3.54744 3.71414 3.74576 3.96865 4.02013 4.05912 4.20891 4.39374 4.42639 4.54867 4.65966 4.77010 4.85373 4.91965 5.07197 5.19788 5.25680 5.29815 5.48931 5.64755 5.81114 6.04262 6.07534 6.19848 6.83257 7.42384 8.40835 8.62082 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.013416 B = 0.002379 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.571387 B =11767.358548 C =12942.008288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.029 3.971 3 Si 1.000 3.000 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.248 1.248 7 C -0.572 4.572 8 H 0.088 0.912 9 C 0.540 3.460 10 O -0.629 6.629 11 N -0.752 5.752 12 C 0.213 3.787 13 C -0.026 4.026 14 C -0.182 4.182 15 C -0.170 4.170 16 C 0.004 3.996 17 C -0.027 4.027 18 C -0.059 4.059 19 C -0.101 4.101 20 C -0.067 4.067 21 C -0.190 4.190 22 C 0.508 3.492 23 F -0.171 7.171 24 F -0.184 7.184 25 F -0.185 7.185 26 C -0.077 4.077 27 O -0.189 6.189 28 H 0.276 0.724 29 H 0.395 0.605 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.170 0.830 33 H 0.194 0.806 34 H 0.170 0.830 35 H 0.184 0.816 36 H 0.164 0.836 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.154 -23.973 -5.601 30.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.171 1.171 7 C -0.608 4.608 8 H 0.106 0.894 9 C 0.345 3.655 10 O -0.516 6.516 11 N -0.408 5.408 12 C 0.089 3.911 13 C -0.076 4.076 14 C -0.202 4.202 15 C -0.189 4.189 16 C -0.045 4.045 17 C -0.027 4.027 18 C -0.077 4.077 19 C -0.118 4.118 20 C -0.085 4.085 21 C -0.191 4.191 22 C 0.454 3.546 23 F -0.152 7.152 24 F -0.166 7.166 25 F -0.166 7.166 26 C -0.095 4.095 27 O -0.086 6.086 28 H 0.086 0.914 29 H 0.228 0.772 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.188 0.812 33 H 0.211 0.789 34 H 0.188 0.812 35 H 0.202 0.798 36 H 0.181 0.819 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 16.010 -23.796 -5.938 29.289 hybrid contribution -0.103 1.162 -0.507 1.272 sum 15.907 -22.634 -6.445 28.405 Atomic orbital electron populations 1.70178 1.09540 1.29148 1.36038 1.26990 0.95549 1.04977 0.91134 0.84979 0.78961 0.75025 0.79154 1.18953 1.19479 1.17070 1.21397 0.95237 0.90052 1.54111 0.89430 1.18621 0.86790 0.83871 0.76215 1.90562 1.16016 1.87321 1.57733 1.45928 1.09361 1.04824 1.80644 1.19201 0.90635 0.79798 1.01474 1.22440 1.01770 0.99826 0.83610 1.21888 1.00228 0.97624 1.00475 1.22137 1.02572 1.02470 0.91671 1.20812 0.96601 0.92385 0.94744 1.17818 0.98307 0.96953 0.89647 1.21717 0.91959 0.91188 1.02794 1.21551 0.99174 1.00260 0.90823 1.21512 0.94670 0.93711 0.98585 1.19878 1.05666 1.03423 0.90153 1.18388 0.73583 0.74132 0.88471 1.93164 1.72896 1.69383 1.79759 1.93215 1.35764 1.95201 1.92407 1.93222 1.90650 1.37160 1.95603 1.20952 0.97510 0.98262 0.92806 1.84012 1.48200 1.41770 1.34653 0.91381 0.77161 0.93538 0.89756 0.81213 0.78896 0.81232 0.79835 0.81888 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.38 11.85 21.83 0.26 -50.12 16 2 C 0.03 1.62 5.49 85.30 0.47 2.09 16 3 Si 1.00 41.12 29.56 68.60 2.03 43.15 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.57 -32.71 9.53 24.83 0.24 -32.47 16 8 H 0.09 4.51 7.86 -2.91 -0.02 4.49 16 9 C 0.54 31.75 7.74 86.36 0.67 32.42 16 10 O -0.63 -42.41 15.05 -4.31 -0.06 -42.47 16 11 N -0.75 -34.94 5.54 -471.14 -2.61 -37.55 16 12 C 0.21 8.60 6.20 85.63 0.53 9.14 16 13 C -0.03 -0.86 6.68 24.88 0.17 -0.69 16 14 C -0.18 -4.69 10.78 22.12 0.24 -4.46 16 15 C -0.17 -3.49 10.26 22.40 0.23 -3.26 16 16 C 0.00 0.11 7.03 24.27 0.17 0.28 16 17 C -0.03 -0.54 5.87 -20.10 -0.12 -0.66 16 18 C -0.06 -0.66 9.56 22.53 0.22 -0.44 16 19 C -0.10 -0.77 10.03 22.23 0.22 -0.54 16 20 C -0.07 -0.77 9.43 22.33 0.21 -0.56 16 21 C -0.19 -3.50 5.37 -19.90 -0.11 -3.61 16 22 C 0.51 10.31 3.31 71.24 0.24 10.55 16 23 F -0.17 -2.98 15.96 44.97 0.72 -2.26 16 24 F -0.18 -4.25 17.23 44.97 0.77 -3.47 16 25 F -0.18 -4.36 17.24 44.97 0.78 -3.58 16 26 C -0.08 -1.72 9.26 22.53 0.21 -1.51 16 27 O -0.19 -6.18 10.41 -6.36 -0.07 -6.24 16 28 H 0.28 15.30 8.29 -92.71 -0.77 14.53 16 29 H 0.39 16.37 8.44 -92.72 -0.78 15.59 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 3.37 8.14 -2.38 -0.02 3.35 16 32 H 0.17 3.74 8.06 -2.91 -0.02 3.72 16 33 H 0.19 2.16 7.26 -2.91 -0.02 2.14 16 34 H 0.17 0.82 6.99 -2.91 -0.02 0.80 16 35 H 0.18 -0.08 8.06 -2.91 -0.02 -0.11 16 36 H 0.16 1.12 7.14 -2.91 -0.02 1.10 16 37 H 0.12 3.05 7.91 -2.91 -0.02 3.03 16 Total: -1.00 -79.83 347.03 5.77 -74.06 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.38 Total: 22.23 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 3.58 Total: 6.26 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -2.35 Total: -87.67 kcal Atomic # 8 Polarization: -48.59 SS G_CDS: -0.13 Total: -48.72 kcal Atomic # 9 Polarization: -11.59 SS G_CDS: 2.27 Total: -9.32 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -79.83 5.77 -74.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097163962.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.956 kcal (2) G-P(sol) polarization free energy of solvation -79.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.37 seconds