Wall clock time and date at job start Tue Mar 31 2020 05:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99672 * 2 1 4 4 H 1.48501 * 109.47132 * 269.99638 * 3 2 1 5 5 H 1.48497 * 109.47569 * 30.00396 * 3 2 1 6 6 H 1.48500 * 109.46749 * 150.00219 * 3 2 1 7 7 C 1.37874 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00263 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00067 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47089 * 180.02562 * 9 7 2 11 11 N 1.40065 * 125.87179 * 89.97798 * 10 9 7 12 12 C 1.30252 * 109.69425 * 180.02562 * 11 10 9 13 13 C 1.41164 * 108.46945 * 0.02562 * 12 11 10 14 14 C 1.36309 * 125.87361 * 270.00157 * 10 9 7 15 15 N 1.33197 * 134.62355 * 0.02562 * 14 10 9 16 16 C 1.31498 * 120.68961 * 179.97438 * 15 14 10 17 17 N 1.32127 * 122.64477 * 0.02835 * 16 15 14 18 18 C 1.32852 * 121.19402 * 359.97177 * 17 16 15 19 19 N 1.38114 * 120.81486 * 180.02562 * 18 17 16 20 20 C 1.47898 * 111.00278 * 239.87832 * 19 18 17 21 21 C 1.53992 * 107.05721 * 214.15794 * 20 19 18 22 22 C 1.54592 * 105.14270 * 1.22343 * 21 20 19 23 23 C 1.48531 * 110.99932 * 122.48062 * 19 18 17 24 24 H 1.08999 * 110.67122 * 41.28498 * 23 19 18 25 25 C 1.50706 * 110.66576 * 278.15842 * 23 19 18 26 26 C 1.34849 * 125.89153 * 324.68918 * 25 23 19 27 27 C 1.40895 * 107.41634 * 179.88658 * 26 25 23 28 28 C 1.34849 * 107.41303 * 0.38056 * 27 26 25 29 29 N 1.36339 * 108.22405 * 359.76797 * 28 27 26 30 30 H 0.97006 * 125.63534 * 180.02562 * 29 28 27 31 31 H 0.97002 * 120.00508 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.46858 * 60.00005 * 9 7 2 33 33 H 1.09000 * 109.47145 * 300.00776 * 9 7 2 34 34 H 1.08003 * 125.76190 * 179.97438 * 12 11 10 35 35 H 1.08000 * 118.67781 * 180.02562 * 16 15 14 36 36 H 1.09007 * 109.91280 * 333.50733 * 20 19 18 37 37 H 1.08997 * 109.91866 * 94.79946 * 20 19 18 38 38 H 1.09000 * 110.31217 * 120.14252 * 21 20 19 39 39 H 1.09000 * 110.30408 * 242.30509 * 21 20 19 40 40 H 1.08993 * 110.72872 * 140.31834 * 22 21 20 41 41 H 1.09005 * 110.72331 * 263.42409 * 22 21 20 42 42 H 1.08001 * 126.29034 * 0.02643 * 26 25 23 43 43 H 1.08002 * 126.28979 * 180.12796 * 27 26 25 44 44 H 1.08006 * 125.88594 * 179.73919 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 7 2.7367 -4.2362 1.1345 12 6 3.5499 -5.1867 0.7716 13 6 3.5869 -5.2294 -0.6390 14 6 2.7221 -4.2198 -1.1051 15 7 2.5795 -4.0523 -2.4188 16 6 3.2326 -4.8155 -3.2674 17 7 4.0525 -5.7755 -2.8775 18 6 4.2615 -6.0206 -1.5886 19 7 5.1207 -7.0257 -1.1898 20 6 4.4126 -8.0357 -0.3738 21 6 5.4129 -8.5481 0.6789 22 6 6.7104 -7.7462 0.4269 23 6 6.2009 -6.4896 -0.3227 24 1 5.8027 -5.7576 0.3799 25 6 7.3013 -5.8849 -1.1563 26 6 7.7238 -6.3359 -2.3549 27 6 8.7609 -5.4842 -2.7841 28 6 8.9382 -4.5504 -1.8276 29 7 8.0452 -4.7911 -0.8259 30 1 7.9539 -4.2701 -0.0128 31 1 -0.4851 0.8400 0.0004 32 1 0.6240 -2.5567 -0.8903 33 1 0.6246 -2.5571 0.8896 34 1 4.1031 -5.8326 1.4374 35 1 3.0931 -4.6512 -4.3256 36 1 3.5550 -7.5789 0.1203 37 1 4.0842 -8.8603 -1.0064 38 1 5.0374 -8.3542 1.6836 39 1 5.5942 -9.6140 0.5411 40 1 7.1814 -7.4684 1.3697 41 1 7.4013 -8.3158 -0.1947 42 1 7.3367 -7.1912 -2.8888 43 1 9.3150 -5.5668 -3.7075 44 1 9.6631 -3.7500 -1.8507 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:02 Heat of formation + Delta-G solvation = 185.488100 kcal Electronic energy + Delta-G solvation = -29434.313985 eV Core-core repulsion = 25582.767899 eV Total energy + Delta-G solvation = -3851.546085 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.94807 -41.02529 -39.22293 -38.25076 -34.17751 -33.44830 -31.65858 -31.40045 -30.90921 -30.79594 -29.14986 -27.34941 -26.95415 -24.47603 -23.69592 -22.70900 -21.96977 -21.31003 -20.57583 -20.31917 -19.66106 -18.21670 -17.58474 -17.10560 -16.78630 -16.42370 -15.50085 -15.03844 -14.88716 -14.57646 -14.47017 -14.20610 -14.12175 -13.66024 -13.45892 -13.33708 -13.04467 -12.69547 -12.51244 -12.34297 -12.25316 -12.01266 -11.81168 -11.60287 -11.55569 -11.20714 -11.14651 -10.89710 -10.85218 -10.53152 -10.38686 -10.36501 -9.82248 -9.23865 -8.77567 -8.73290 -8.69357 -8.51136 -8.09815 -7.94755 -6.31172 -4.38543 0.81490 1.67454 2.26884 2.72478 2.81813 3.05112 3.17982 3.18820 3.23828 3.28028 3.61074 4.05954 4.24047 4.36953 4.47092 4.51393 4.54523 4.70788 4.75813 4.93686 4.96560 5.04165 5.20013 5.22221 5.23033 5.31875 5.44487 5.51671 5.56874 5.63626 5.66598 5.80471 5.84131 5.92981 6.20882 6.31687 6.37465 6.44649 6.56647 6.88857 6.91519 6.98008 7.12243 7.22256 7.27060 7.56509 7.62320 7.70878 7.79535 7.99668 8.55156 8.64740 9.27082 10.77103 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.003770 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.861625 B = 7425.606046 C = 8250.328901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.262 3.738 10 N -0.330 5.330 11 N -0.222 5.222 12 C 0.052 3.948 13 C -0.317 4.317 14 C 0.346 3.654 15 N -0.519 5.519 16 C 0.336 3.664 17 N -0.530 5.530 18 C 0.429 3.571 19 N -0.462 5.462 20 C 0.042 3.958 21 C -0.130 4.130 22 C -0.111 4.111 23 C 0.142 3.858 24 H 0.070 0.930 25 C 0.015 3.985 26 C -0.152 4.152 27 C -0.207 4.207 28 C -0.014 4.014 29 N -0.558 5.558 30 H 0.410 0.590 31 H 0.269 0.731 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.184 0.816 35 H 0.201 0.799 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.139 0.861 43 H 0.132 0.868 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.143 -16.113 -0.013 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.078 0.922 9 C 0.146 3.854 10 N -0.118 5.118 11 N -0.038 5.038 12 C -0.143 4.143 13 C -0.334 4.334 14 C 0.097 3.903 15 N -0.239 5.239 16 C 0.043 3.957 17 N -0.248 5.248 18 C 0.179 3.821 19 N -0.185 5.185 20 C -0.085 4.085 21 C -0.168 4.168 22 C -0.149 4.149 23 C 0.034 3.966 24 H 0.088 0.912 25 C -0.097 4.097 26 C -0.177 4.177 27 C -0.232 4.232 28 C -0.145 4.145 29 N -0.153 5.153 30 H 0.246 0.754 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.201 0.799 35 H 0.218 0.782 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.157 0.843 43 H 0.150 0.850 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 13.237 -15.097 -0.279 20.080 hybrid contribution 0.409 1.338 1.052 1.750 sum 13.646 -13.759 0.772 19.394 Atomic orbital electron populations 1.69910 1.06008 1.27792 1.48960 1.24889 0.94991 0.99376 0.94277 0.86337 0.79616 0.82148 0.78470 1.20176 1.20696 1.19838 1.21199 0.93452 0.89609 1.53269 0.92159 1.19861 0.85635 0.79761 1.00169 1.49573 1.35815 1.27780 0.98594 1.76943 1.10102 1.07151 1.09622 1.23513 0.99958 0.98526 0.92328 1.20834 1.09784 1.06502 0.96285 1.19101 0.91951 0.90653 0.88598 1.67507 1.27148 1.29018 1.00191 1.24774 0.86414 0.85017 0.99524 1.68079 1.19744 1.20754 1.16208 1.19456 0.87167 0.87636 0.87873 1.61134 1.09084 1.10452 1.37792 1.23002 0.96214 0.94824 0.94421 1.22433 0.94778 1.00961 0.98593 1.22537 0.97634 0.94711 1.00026 1.21135 0.88400 0.96134 0.90948 0.91230 1.19734 0.98761 0.92412 0.98778 1.20634 0.99157 1.02482 0.95437 1.20929 1.02959 0.98817 1.00488 1.21764 0.98891 1.03316 0.90544 1.41894 1.29692 1.24718 1.18995 0.75434 0.92129 0.92141 0.92623 0.79944 0.78238 0.92229 0.89161 0.90785 0.90103 0.90445 0.89593 0.84308 0.85016 0.82282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 2 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 3 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -15.07 9.39 -34.44 -0.32 -15.39 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.26 6.85 6.19 -5.19 -0.03 6.82 16 10 N -0.33 -7.70 3.63 -61.64 -0.22 -7.92 16 11 N -0.22 -4.58 12.45 30.80 0.38 -4.20 16 12 C 0.05 0.86 9.28 -17.11 -0.16 0.70 16 13 C -0.32 -5.70 4.95 -106.82 -0.53 -6.22 16 14 C 0.35 7.52 8.04 -156.23 -1.26 6.26 16 15 N -0.52 -10.89 10.47 -13.97 -0.15 -11.03 16 16 C 0.34 5.81 12.24 -92.12 -1.13 4.68 16 17 N -0.53 -9.09 10.45 -13.62 -0.14 -9.23 16 18 C 0.43 6.98 5.71 -154.85 -0.88 6.10 16 19 N -0.46 -5.96 4.74 -162.73 -0.77 -6.73 16 20 C 0.04 0.43 6.30 -2.76 -0.02 0.41 16 21 C -0.13 -0.93 6.93 -25.38 -0.18 -1.11 16 22 C -0.11 -0.90 6.48 -24.87 -0.16 -1.07 16 23 C 0.14 1.62 2.62 -66.94 -0.18 1.45 16 24 H 0.07 0.84 5.29 -51.93 -0.27 0.57 16 25 C 0.02 0.19 6.07 -81.79 -0.50 -0.30 16 26 C -0.15 -2.04 10.41 -39.78 -0.41 -2.45 16 27 C -0.21 -2.57 10.86 -39.78 -0.43 -3.00 16 28 C -0.01 -0.16 11.94 -16.75 -0.20 -0.36 16 29 N -0.56 -6.48 6.07 -9.12 -0.06 -6.54 16 30 H 0.41 3.95 8.96 -40.82 -0.37 3.58 16 31 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 33 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.18 2.18 7.16 -52.48 -0.38 1.81 16 35 H 0.20 2.63 8.06 -52.49 -0.42 2.20 16 36 H 0.06 0.66 5.90 -51.92 -0.31 0.36 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 42 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 43 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -33.12 367.40 -11.70 -44.82 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.51 Total: 5.19 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -6.48 Total: -1.68 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -0.22 Total: -70.25 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.12 -11.70 -44.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.311 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 197.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds