Wall clock time and date at job start Tue Mar 31 2020 07:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00188 * 2 1 4 4 H 1.48493 * 109.47299 * 270.00351 * 3 2 1 5 5 H 1.48497 * 109.46730 * 30.00838 * 3 2 1 6 6 H 1.48498 * 109.46830 * 150.00203 * 3 2 1 7 7 C 1.37881 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99777 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99588 * 359.97438 * 7 2 1 10 10 N 1.46510 * 109.46809 * 180.02562 * 9 7 2 11 11 N 1.40064 * 125.86980 * 270.28635 * 10 9 7 12 12 C 1.30249 * 109.69101 * 180.12038 * 11 10 9 13 13 C 1.41168 * 108.46928 * 359.63725 * 12 11 10 14 14 C 1.36308 * 125.87260 * 90.00139 * 10 9 7 15 15 N 1.33199 * 134.61923 * 0.07553 * 14 10 9 16 16 C 1.31510 * 120.68256 * 179.97438 * 15 14 10 17 17 N 1.32123 * 122.64648 * 0.02562 * 16 15 14 18 18 C 1.32858 * 121.19451 * 0.02562 * 17 16 15 19 19 N 1.38107 * 120.81448 * 180.02562 * 18 17 16 20 20 C 1.46503 * 119.99962 * 359.97323 * 19 18 17 21 21 C 1.52997 * 109.47004 * 179.97438 * 20 19 18 22 22 H 1.08999 * 109.47825 * 305.00439 * 21 20 19 23 23 O 1.42909 * 109.47137 * 65.00557 * 21 20 19 24 24 C 1.50703 * 109.46984 * 185.00111 * 21 20 19 25 25 C 1.38237 * 119.99940 * 279.72942 * 24 21 20 26 26 C 1.38241 * 119.99634 * 179.81058 * 25 24 21 27 27 C 1.38230 * 120.00118 * 0.39588 * 26 25 24 28 28 C 1.38239 * 119.99974 * 359.86066 * 27 26 25 29 29 C 1.38228 * 119.99845 * 359.95137 * 28 27 26 30 30 H 0.97001 * 119.99480 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47701 * 60.00432 * 9 7 2 32 32 H 1.08996 * 109.47415 * 299.99946 * 9 7 2 33 33 H 1.08002 * 125.76682 * 179.90918 * 12 11 10 34 34 H 1.08001 * 118.67401 * 179.97438 * 16 15 14 35 35 H 0.97007 * 120.00145 * 179.97438 * 19 18 17 36 36 H 1.08999 * 109.47253 * 300.00618 * 20 19 18 37 37 H 1.09004 * 109.46630 * 60.00454 * 20 19 18 38 38 H 0.96698 * 114.00033 * 59.99301 * 23 21 20 39 39 H 1.07997 * 120.00088 * 359.97438 * 25 24 21 40 40 H 1.07999 * 119.99565 * 180.23445 * 26 25 24 41 41 H 1.07997 * 119.99773 * 179.83492 * 27 26 25 42 42 H 1.07998 * 119.99525 * 179.97438 * 28 27 26 43 43 H 1.08000 * 119.99897 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 7 2.7406 -4.2328 -1.1355 12 6 3.5501 -5.1865 -0.7726 13 6 3.5864 -5.2297 0.6379 14 6 2.7220 -4.2199 1.1040 15 7 2.5780 -4.0535 2.4177 16 6 3.2307 -4.8171 3.2664 17 7 4.0523 -5.7756 2.8765 18 6 4.2634 -6.0189 1.5876 19 7 5.1235 -7.0232 1.1888 20 6 5.8166 -7.8353 2.1920 21 6 6.7007 -8.8679 1.4900 22 1 6.0956 -9.4544 0.7986 23 8 7.7346 -8.1969 0.7668 24 6 7.3180 -9.7819 2.5170 25 6 8.4303 -9.3715 3.2278 26 6 8.9942 -10.2084 4.1727 27 6 8.4506 -11.4587 4.4009 28 6 7.3414 -11.8711 3.6863 29 6 6.7753 -11.0328 2.7443 30 1 -0.4849 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6246 -2.5570 0.8896 33 1 4.1037 -5.8321 -1.4384 34 1 3.0901 -4.6536 4.3246 35 1 5.2686 -7.1909 0.2444 36 1 6.4355 -7.1910 2.8165 37 1 5.0831 -8.3483 2.8140 38 1 8.3134 -7.6547 1.3200 39 1 8.8572 -8.3962 3.0468 40 1 9.8609 -9.8863 4.7307 41 1 8.8928 -12.1134 5.1372 42 1 6.9171 -12.8481 3.8644 43 1 5.9085 -11.3548 2.1863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:30 Heat of formation + Delta-G solvation = 92.409227 kcal Electronic energy + Delta-G solvation = -27502.191635 eV Core-core repulsion = 23548.890685 eV Total energy + Delta-G solvation = -3953.300950 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.36961 -40.13696 -38.50214 -37.62751 -35.75218 -33.72038 -32.56008 -31.85099 -31.28999 -31.26698 -29.95759 -27.84169 -27.08252 -24.25389 -23.91426 -23.20314 -22.96540 -22.09931 -21.47578 -20.06864 -18.21236 -17.96859 -17.25003 -16.68764 -16.58365 -16.30894 -16.20396 -15.42659 -15.18253 -14.94268 -14.64102 -14.48719 -14.25891 -13.86668 -13.80470 -13.68560 -13.52338 -13.30442 -13.06957 -12.75029 -12.22329 -12.13100 -11.67340 -11.63809 -11.40936 -11.19685 -10.97556 -10.96721 -10.74628 -10.58319 -10.27391 -10.07325 -9.82314 -9.35067 -9.25474 -9.20227 -8.67177 -8.58344 -8.20562 -7.62680 -6.20668 -4.26978 0.86209 0.97464 1.32023 1.95361 2.91023 3.03370 3.11944 3.25414 3.30845 3.34897 3.37059 3.98968 4.17385 4.32266 4.37155 4.41274 4.46658 4.58772 4.64871 4.69826 4.76378 4.78473 5.00274 5.05907 5.13248 5.14695 5.19453 5.43827 5.47888 5.51717 5.59791 5.64053 5.73815 6.01375 6.09127 6.11181 6.32173 6.54238 6.68944 6.91256 7.04544 7.12289 7.13303 7.24338 7.51800 7.73542 7.91789 7.93898 8.24796 8.73197 8.83901 9.37884 10.87547 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024362 B = 0.002061 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.067898 B =13579.866194 C =13665.998744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.332 5.332 11 N -0.243 5.243 12 C 0.069 3.931 13 C -0.336 4.336 14 C 0.363 3.637 15 N -0.554 5.554 16 C 0.366 3.634 17 N -0.620 5.620 18 C 0.509 3.491 19 N -0.703 5.703 20 C 0.107 3.893 21 C 0.136 3.864 22 H 0.114 0.886 23 O -0.551 6.551 24 C -0.114 4.114 25 C -0.108 4.108 26 C -0.117 4.117 27 C -0.118 4.118 28 C -0.118 4.118 29 C -0.106 4.106 30 H 0.268 0.732 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.183 0.817 34 H 0.195 0.805 35 H 0.413 0.587 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.377 0.623 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.237 -23.644 7.431 29.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.571 4.571 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.118 5.118 11 N -0.059 5.059 12 C -0.126 4.126 13 C -0.354 4.354 14 C 0.115 3.885 15 N -0.279 5.279 16 C 0.072 3.928 17 N -0.351 5.351 18 C 0.256 3.744 19 N -0.337 5.337 20 C -0.017 4.017 21 C 0.076 3.924 22 H 0.132 0.868 23 O -0.357 6.357 24 C -0.115 4.115 25 C -0.126 4.126 26 C -0.135 4.135 27 C -0.136 4.136 28 C -0.136 4.136 29 C -0.124 4.124 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.200 0.800 34 H 0.211 0.789 35 H 0.250 0.750 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.226 0.774 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 14.979 -22.878 6.907 28.204 hybrid contribution 1.170 0.627 0.071 1.329 sum 16.149 -22.250 6.978 28.365 Atomic orbital electron populations 1.69921 1.05995 1.27608 1.49387 1.24905 0.94993 0.99368 0.94477 0.86335 0.79708 0.82217 0.78282 1.20352 1.20810 1.19775 1.21245 0.93541 0.89680 1.52660 0.92063 1.19795 0.85693 0.79866 0.99986 1.49463 1.35715 1.27853 0.98799 1.76946 1.11510 1.08109 1.09345 1.23386 0.99077 0.97790 0.92344 1.19603 1.12543 1.07943 0.95342 1.18941 0.91108 0.89970 0.88523 1.67515 1.29563 1.30780 1.00007 1.24397 0.85204 0.84016 0.99167 1.67940 1.26810 1.25778 1.14535 1.17890 0.84159 0.84106 0.88227 1.44165 1.46033 1.34299 1.09182 1.21958 0.95912 0.92737 0.91120 1.21083 0.88024 0.91165 0.92112 0.86820 1.86641 1.44952 1.65934 1.38150 1.20336 0.96988 0.95742 0.98397 1.20902 0.95855 0.99802 0.96043 1.21143 1.00048 0.94300 0.97988 1.21219 0.96432 0.96423 0.99556 1.21172 0.96358 0.99802 0.96297 1.21026 0.99797 0.93318 0.98272 0.92277 0.92802 0.92250 0.80031 0.78906 0.74996 0.90963 0.90352 0.77420 0.86056 0.85831 0.85985 0.85834 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.91 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.33 9.39 -34.44 -0.32 -15.65 16 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.26 7.09 6.19 -5.19 -0.03 7.06 16 10 N -0.33 -8.02 3.63 -61.64 -0.22 -8.25 16 11 N -0.24 -5.26 12.45 30.80 0.38 -4.88 16 12 C 0.07 1.19 11.87 -17.11 -0.20 0.98 16 13 C -0.34 -6.16 6.14 -106.82 -0.66 -6.81 16 14 C 0.36 8.07 8.04 -156.24 -1.26 6.82 16 15 N -0.55 -11.76 10.47 -13.97 -0.15 -11.91 16 16 C 0.37 6.18 12.24 -92.11 -1.13 5.05 16 17 N -0.62 -9.83 9.69 -13.62 -0.13 -9.96 16 18 C 0.51 7.84 7.55 -154.85 -1.17 6.67 16 19 N -0.70 -7.67 5.63 -60.08 -0.34 -8.01 16 20 C 0.11 0.94 5.35 -4.04 -0.02 0.92 16 21 C 0.14 0.95 3.24 -27.88 -0.09 0.86 16 22 H 0.11 0.74 8.00 -51.93 -0.42 0.32 16 23 O -0.55 -4.22 13.13 -35.23 -0.46 -4.68 16 24 C -0.11 -0.80 4.97 -104.62 -0.52 -1.32 16 25 C -0.11 -0.72 9.32 -39.58 -0.37 -1.08 16 26 C -0.12 -0.74 10.05 -39.58 -0.40 -1.14 16 27 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16 28 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 29 C -0.11 -0.72 9.67 -39.59 -0.38 -1.10 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.05 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 33 H 0.18 2.16 8.06 -52.49 -0.42 1.74 16 34 H 0.19 2.47 8.06 -52.49 -0.42 2.04 16 35 H 0.41 3.86 8.34 -40.82 -0.34 3.52 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.38 1.96 7.50 45.56 0.34 2.30 16 39 H 0.12 0.59 6.78 -52.49 -0.36 0.23 16 40 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.12 0.66 8.04 -52.49 -0.42 0.24 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -34.69 376.36 -11.52 -46.20 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.54 Total: 3.43 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -7.44 Total: 0.74 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: 0.28 Total: -68.20 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.46 Total: -4.68 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.69 -11.52 -46.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.612 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds