Wall clock time and date at job start Tue Mar 31 2020 07:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86810 * 119.99467 * 2 1 4 4 H 1.48500 * 109.46879 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46853 * 299.99922 * 3 2 1 6 6 H 1.48495 * 109.46962 * 60.00020 * 3 2 1 7 7 C 1.37872 * 120.00464 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99919 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00006 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47052 * 179.97438 * 9 7 2 11 11 N 1.40058 * 125.87110 * 269.99692 * 10 9 7 12 12 C 1.30251 * 109.69463 * 180.02562 * 11 10 9 13 13 C 1.41176 * 108.46950 * 359.76930 * 12 11 10 14 14 C 1.36318 * 125.87164 * 89.99988 * 10 9 7 15 15 N 1.33189 * 134.61734 * 0.02562 * 14 10 9 16 16 C 1.31509 * 120.68649 * 180.02562 * 15 14 10 17 17 N 1.32129 * 122.64158 * 359.97438 * 16 15 14 18 18 C 1.32856 * 121.19170 * 0.02562 * 17 16 15 19 19 N 1.38112 * 120.81039 * 179.97438 * 18 17 16 20 20 C 1.46504 * 119.99918 * 0.02562 * 19 18 17 21 21 C 1.52996 * 109.46966 * 179.97438 * 20 19 18 22 22 H 1.09004 * 109.47294 * 60.00267 * 21 20 19 23 23 O 1.42897 * 109.47461 * 299.99722 * 21 20 19 24 24 C 1.50703 * 109.47237 * 179.97438 * 21 20 19 25 25 C 1.38235 * 120.00292 * 265.00335 * 24 21 20 26 26 C 1.38230 * 119.99899 * 179.97438 * 25 24 21 27 27 C 1.38235 * 120.00326 * 359.95697 * 26 25 24 28 28 C 1.38234 * 119.99814 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99503 * 84.97628 * 24 21 20 30 30 H 0.97005 * 120.00617 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46788 * 59.99787 * 9 7 2 32 32 H 1.09001 * 109.46844 * 300.00279 * 9 7 2 33 33 H 1.07996 * 125.76724 * 180.02562 * 12 11 10 34 34 H 1.07999 * 118.67833 * 179.97438 * 16 15 14 35 35 H 0.97003 * 120.00078 * 179.97438 * 19 18 17 36 36 H 1.09004 * 109.46896 * 59.99769 * 20 19 18 37 37 H 1.08994 * 109.46801 * 299.99692 * 20 19 18 38 38 H 0.96694 * 114.00150 * 300.00537 * 23 21 20 39 39 H 1.08001 * 119.99730 * 359.97438 * 25 24 21 40 40 H 1.08000 * 120.00376 * 179.97438 * 26 25 24 41 41 H 1.08000 * 120.00616 * 179.72578 * 27 26 25 42 42 H 1.08001 * 120.00299 * 179.97438 * 28 27 26 43 43 H 1.07997 * 120.00455 * 0.02562 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8901 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1938 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 7 2.7365 -4.2363 -1.1344 12 6 3.5491 -5.1874 -0.7715 13 6 3.5897 -5.2271 0.6391 14 6 2.7223 -4.2196 1.1052 15 7 2.5790 -4.0527 2.4187 16 6 3.2323 -4.8157 3.2675 17 7 4.0532 -5.7748 2.8777 18 6 4.2629 -6.0193 1.5888 19 7 5.1232 -7.0235 1.1900 20 6 5.8171 -7.8348 2.1933 21 6 6.7012 -8.8676 1.4914 22 1 7.4342 -8.3550 0.8684 23 8 5.8892 -9.7129 0.6740 24 6 7.4155 -9.7017 2.5234 25 6 8.6955 -9.3630 2.9206 26 6 9.3504 -10.1279 3.8675 27 6 8.7251 -11.2310 4.4180 28 6 7.4446 -11.5689 4.0219 29 6 6.7904 -10.8053 3.0732 30 1 -0.4851 0.8400 0.0004 31 1 0.6248 -2.5571 -0.8897 32 1 0.6241 -2.5567 0.8903 33 1 4.1019 -5.8336 -1.4373 34 1 3.0922 -4.6517 4.3258 35 1 5.2673 -7.1922 0.2457 36 1 5.0841 -8.3477 2.8161 37 1 6.4362 -7.1900 2.8170 38 1 5.2131 -10.2014 1.1632 39 1 9.1838 -8.5008 2.4910 40 1 10.3506 -9.8636 4.1776 41 1 9.2385 -11.8312 5.1547 42 1 6.9561 -12.4310 4.4516 43 1 5.7904 -11.0700 2.7629 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:42 Heat of formation + Delta-G solvation = 92.515100 kcal Electronic energy + Delta-G solvation = -27505.798054 eV Core-core repulsion = 23552.501695 eV Total energy + Delta-G solvation = -3953.296359 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 5.51 seconds Orbital eigenvalues (eV) -41.36907 -40.14310 -38.50290 -37.63850 -35.74119 -33.72115 -32.56421 -31.85669 -31.27905 -31.26719 -29.95790 -27.85316 -27.08719 -24.24324 -23.91425 -23.17691 -22.97980 -22.09901 -21.47603 -20.06820 -18.23464 -17.97102 -17.24549 -16.69682 -16.55978 -16.33377 -16.20257 -15.43197 -15.16455 -14.96028 -14.63851 -14.49866 -14.25653 -13.86016 -13.80490 -13.68405 -13.51697 -13.30425 -13.07515 -12.75194 -12.20912 -12.13634 -11.66691 -11.63362 -11.42176 -11.19612 -10.98941 -10.94443 -10.75905 -10.60371 -10.28058 -10.07254 -9.80422 -9.34920 -9.25073 -9.19457 -8.67213 -8.58946 -8.20402 -7.62546 -6.20934 -4.27218 0.86478 0.97668 1.32075 1.95377 2.90723 3.03793 3.11542 3.24079 3.31035 3.35502 3.37866 3.97131 4.17652 4.32089 4.38737 4.41413 4.45834 4.58955 4.64949 4.69952 4.76491 4.78745 5.00425 5.06045 5.13661 5.14515 5.19515 5.44616 5.47987 5.51730 5.60106 5.63884 5.73926 6.01611 6.09387 6.11154 6.32199 6.54436 6.69042 6.91425 7.04512 7.11851 7.12443 7.24570 7.52126 7.73582 7.91650 7.93951 8.24886 8.73317 8.83952 9.37764 10.87322 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024028 B = 0.002072 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.027810 B =13510.548280 C =13767.467670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.263 3.737 10 N -0.332 5.332 11 N -0.243 5.243 12 C 0.069 3.931 13 C -0.336 4.336 14 C 0.362 3.638 15 N -0.554 5.554 16 C 0.366 3.634 17 N -0.620 5.620 18 C 0.509 3.491 19 N -0.703 5.703 20 C 0.107 3.893 21 C 0.136 3.864 22 H 0.115 0.885 23 O -0.551 6.551 24 C -0.114 4.114 25 C -0.106 4.106 26 C -0.118 4.118 27 C -0.119 4.119 28 C -0.117 4.117 29 C -0.108 4.108 30 H 0.267 0.733 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.183 0.817 34 H 0.195 0.805 35 H 0.414 0.586 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.377 0.623 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.127 -23.732 7.420 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.118 5.118 11 N -0.059 5.059 12 C -0.126 4.126 13 C -0.354 4.354 14 C 0.114 3.886 15 N -0.279 5.279 16 C 0.072 3.928 17 N -0.351 5.351 18 C 0.256 3.744 19 N -0.337 5.337 20 C -0.018 4.018 21 C 0.076 3.924 22 H 0.132 0.868 23 O -0.357 6.357 24 C -0.115 4.115 25 C -0.125 4.125 26 C -0.136 4.136 27 C -0.137 4.137 28 C -0.135 4.135 29 C -0.126 4.126 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.200 0.800 34 H 0.211 0.789 35 H 0.251 0.749 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.226 0.774 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.527 -22.433 6.924 28.147 hybrid contribution 0.632 0.193 0.052 0.663 sum 16.158 -22.240 6.977 28.362 Atomic orbital electron populations 1.69926 1.05996 1.27510 1.49486 1.24903 0.94988 0.99377 0.94490 0.86286 0.79936 0.82554 0.77784 1.19714 1.20660 1.20583 1.21284 0.93580 0.89663 1.52524 0.92007 1.19800 0.85709 0.79884 0.99995 1.49455 1.35829 1.27741 0.98798 1.76944 1.11566 1.08072 1.09336 1.23389 0.99020 0.97828 0.92346 1.19604 1.12546 1.07927 0.95342 1.18943 0.91107 0.89984 0.88521 1.67509 1.29595 1.30762 1.00007 1.24399 0.85187 0.84037 0.99164 1.67944 1.26775 1.25814 1.14535 1.17890 0.84211 0.84064 0.88223 1.44153 1.46203 1.34078 1.09235 1.21944 0.95728 0.92961 0.91120 1.21083 0.91858 0.88826 0.90622 0.86769 1.86634 1.50077 1.61434 1.37533 1.20339 0.95442 0.97026 0.98649 1.21024 0.94126 0.99699 0.97606 1.21173 1.00086 0.95423 0.96900 1.21218 0.95295 0.97304 0.99844 1.21140 0.95184 0.99748 0.97425 1.20883 0.99849 0.95093 0.96794 0.92326 0.92799 0.92244 0.80024 0.78907 0.74925 0.90999 0.90326 0.77439 0.85698 0.85825 0.85990 0.85852 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.53 -15.31 9.39 -34.44 -0.32 -15.63 16 8 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.26 7.08 6.19 -5.19 -0.03 7.05 16 10 N -0.33 -8.02 3.63 -61.64 -0.22 -8.25 16 11 N -0.24 -5.27 12.45 30.80 0.38 -4.88 16 12 C 0.07 1.19 11.87 -17.11 -0.20 0.99 16 13 C -0.34 -6.15 6.14 -106.81 -0.66 -6.81 16 14 C 0.36 8.07 8.04 -156.23 -1.26 6.81 16 15 N -0.55 -11.75 10.47 -13.97 -0.15 -11.90 16 16 C 0.37 6.17 12.24 -92.11 -1.13 5.05 16 17 N -0.62 -9.82 9.69 -13.62 -0.13 -9.95 16 18 C 0.51 7.83 7.55 -154.85 -1.17 6.66 16 19 N -0.70 -7.66 5.57 -60.08 -0.33 -8.00 16 20 C 0.11 0.93 5.38 -4.04 -0.02 0.91 16 21 C 0.14 0.94 3.30 -27.88 -0.09 0.85 16 22 H 0.11 0.75 8.05 -51.93 -0.42 0.34 16 23 O -0.55 -4.07 12.88 -35.23 -0.45 -4.52 16 24 C -0.11 -0.80 5.00 -104.62 -0.52 -1.33 16 25 C -0.11 -0.73 9.68 -39.59 -0.38 -1.11 16 26 C -0.12 -0.75 10.05 -39.59 -0.40 -1.15 16 27 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16 28 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16 29 C -0.11 -0.71 9.33 -39.58 -0.37 -1.08 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.05 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 33 H 0.18 2.17 8.06 -52.49 -0.42 1.75 16 34 H 0.19 2.46 8.06 -52.49 -0.42 2.04 16 35 H 0.41 3.89 8.21 -40.82 -0.34 3.55 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.38 1.84 7.39 45.56 0.34 2.17 16 39 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 40 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.12 0.55 8.06 -52.49 -0.42 0.12 16 43 H 0.12 0.57 6.62 -52.49 -0.35 0.22 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -34.62 375.86 -11.51 -46.14 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.54 Total: 3.35 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -7.45 Total: 0.70 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: 0.28 Total: -68.16 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.45 Total: -4.52 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.62 -11.51 -46.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.653 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.51 seconds