Wall clock time and date at job start Tue Mar 31 2020 07:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99628 * 2 1 4 4 C 1.38749 * 120.05570 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.94051 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.05778 * 0.02562 * 5 4 3 7 7 C 1.38238 * 120.11154 * 359.97438 * 6 5 4 8 8 C 1.38172 * 120.05419 * 359.68061 * 7 6 5 9 9 C 1.50703 * 120.02680 * 180.29762 * 8 7 6 10 10 N 1.46499 * 109.47155 * 260.31978 * 9 8 7 11 11 C 1.38109 * 120.00040 * 180.02562 * 10 9 8 12 12 N 1.32862 * 120.81325 * 359.97438 * 11 10 9 13 13 C 1.32124 * 121.19131 * 179.97438 * 12 11 10 14 14 N 1.31498 * 122.64676 * 0.02562 * 13 12 11 15 15 C 1.33197 * 120.68579 * 0.02562 * 14 13 12 16 16 C 1.40817 * 120.81249 * 179.71674 * 11 10 9 17 17 C 1.41169 * 134.69746 * 0.68925 * 16 11 10 18 18 N 1.30246 * 108.47248 * 179.54443 * 17 16 11 19 19 N 1.36318 * 134.61670 * 180.02562 * 15 14 13 20 20 C 1.46497 * 125.87182 * 359.97438 * 19 15 14 21 21 C 1.50709 * 109.46889 * 90.00575 * 20 19 15 22 22 H 1.07996 * 119.99845 * 0.02562 * 21 20 19 23 23 C 1.37871 * 119.99717 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99896 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00552 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47133 * 89.99737 * 25 23 21 27 27 H 1.48497 * 109.47335 * 209.99807 * 25 23 21 28 28 H 1.48500 * 109.46788 * 329.99806 * 25 23 21 29 29 H 1.09002 * 109.47382 * 59.99787 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.99774 * 1 2 3 31 31 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.03283 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.96622 * 180.02562 * 5 4 3 34 34 H 1.08005 * 119.94205 * 179.97438 * 6 5 4 35 35 H 1.07999 * 119.97188 * 179.97438 * 7 6 5 36 36 H 1.09001 * 109.47511 * 20.32082 * 9 8 7 37 37 H 1.08996 * 109.47137 * 140.31864 * 9 8 7 38 38 H 0.97003 * 119.99874 * 0.02562 * 10 9 8 39 39 H 1.07996 * 118.67335 * 180.02562 * 13 12 11 40 40 H 1.08006 * 125.76443 * 359.30764 * 17 16 11 41 41 H 1.09003 * 109.47464 * 210.00254 * 20 19 15 42 42 H 1.08996 * 109.47457 * 330.00533 * 20 19 15 43 43 H 0.97003 * 120.00581 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 -0.0016 7 6 4.0559 2.5173 -0.0021 8 6 3.4310 1.2849 0.0056 9 6 4.2537 0.0223 0.0118 10 7 4.3241 -0.5214 -1.3468 11 6 5.0291 -1.6839 -1.5897 12 7 5.6498 -2.3220 -0.6035 13 6 6.3259 -3.4349 -0.8274 14 7 6.4275 -3.9751 -2.0220 15 6 5.8411 -3.4096 -3.0758 16 6 5.1030 -2.2247 -2.8878 17 6 4.6001 -1.8460 -4.1513 18 7 4.9879 -2.7255 -5.0303 19 7 5.7599 -3.7113 -4.4027 20 6 6.3737 -4.8683 -5.0591 21 6 5.4101 -6.0269 -5.0392 22 1 4.4376 -5.9126 -4.5836 23 6 5.7696 -7.2323 -5.6036 24 7 4.9289 -8.2435 -5.5858 25 14 7.4514 -7.4298 -6.3923 26 1 8.4239 -7.8999 -5.3732 27 1 7.3685 -8.4233 -7.4928 28 1 7.8988 -6.1230 -6.9378 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2127 2.3204 0.0005 33 1 1.3338 4.5114 0.0008 34 1 3.7921 4.6383 -0.0024 35 1 5.1343 2.5754 -0.0038 36 1 5.2600 0.2459 0.3662 37 1 3.7902 -0.7101 0.6726 38 1 3.8756 -0.0648 -2.0757 39 1 6.8147 -3.9205 0.0043 40 1 3.9929 -0.9762 -4.3543 41 1 6.6155 -4.6146 -6.0912 42 1 7.2855 -5.1450 -4.5298 43 1 5.1820 -9.0917 -5.9825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:25 Heat of formation + Delta-G solvation = 113.985438 kcal Electronic energy + Delta-G solvation = -27950.252671 eV Core-core repulsion = 23997.887336 eV Total energy + Delta-G solvation = -3952.365335 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 9.79 seconds Orbital eigenvalues (eV) -41.37580 -40.61701 -38.46153 -37.79677 -36.26733 -33.78530 -32.82980 -31.61629 -31.27127 -30.49196 -29.37929 -27.82403 -27.63073 -25.94746 -23.88307 -23.04291 -22.50379 -22.27861 -21.58997 -20.02507 -18.47004 -17.84926 -17.32772 -17.07340 -16.64054 -16.47245 -16.06804 -15.82854 -15.19594 -15.08747 -14.74013 -14.39315 -14.23517 -14.10821 -13.74475 -13.63683 -13.40788 -13.19835 -12.88883 -12.64623 -12.41603 -12.30798 -12.01099 -11.86808 -11.47757 -11.23517 -11.14751 -10.97622 -10.91379 -10.66701 -10.23098 -10.07657 -9.65726 -9.36536 -9.21999 -8.70672 -8.68853 -8.51593 -8.18784 -7.57990 -6.19004 -4.21225 0.84221 1.05302 1.34133 1.97499 2.90323 2.93840 3.04551 3.12070 3.23928 3.29538 3.31199 3.54928 4.28326 4.29211 4.40963 4.44987 4.56599 4.69823 4.73280 4.74071 4.82427 4.92723 4.96984 5.02505 5.12152 5.18432 5.20157 5.24657 5.40326 5.46602 5.57634 5.72851 5.79784 5.92492 6.06915 6.15217 6.31520 6.38752 6.54233 6.59525 6.92438 6.97830 7.01675 7.29461 7.34978 7.49738 7.89370 8.18681 8.34976 8.81625 8.85468 9.35997 10.93816 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020368 B = 0.002416 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.342055 B =11586.526149 C =11879.585588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.147 3.853 4 C -0.214 4.214 5 C -0.073 4.073 6 C -0.162 4.162 7 C -0.060 4.060 8 C -0.143 4.143 9 C 0.184 3.816 10 N -0.697 5.697 11 C 0.513 3.487 12 N -0.618 5.618 13 C 0.370 3.630 14 N -0.559 5.559 15 C 0.367 3.633 16 C -0.336 4.336 17 C 0.074 3.926 18 N -0.243 5.243 19 N -0.333 5.333 20 C 0.237 3.763 21 C -0.536 4.536 22 H 0.078 0.922 23 C 0.079 3.921 24 N -0.889 5.889 25 Si 0.875 3.125 26 H -0.270 1.270 27 H -0.280 1.280 28 H -0.264 1.264 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.132 0.868 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.409 0.591 39 H 0.195 0.805 40 H 0.183 0.817 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.831 25.016 13.666 29.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.100 3.900 4 C -0.232 4.232 5 C -0.091 4.091 6 C -0.180 4.180 7 C -0.079 4.079 8 C -0.144 4.144 9 C 0.061 3.939 10 N -0.330 5.330 11 C 0.260 3.740 12 N -0.349 5.349 13 C 0.076 3.924 14 N -0.285 5.285 15 C 0.120 3.880 16 C -0.354 4.354 17 C -0.122 4.122 18 N -0.058 5.058 19 N -0.119 5.119 20 C 0.119 3.881 21 C -0.575 4.575 22 H 0.096 0.904 23 C -0.125 4.125 24 N -0.526 5.526 25 Si 0.701 3.299 26 H -0.195 1.195 27 H -0.206 1.206 28 H -0.189 1.189 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.245 0.755 39 H 0.212 0.788 40 H 0.200 0.800 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.271 23.643 13.054 27.517 hybrid contribution -0.224 0.610 -0.535 0.842 sum -5.495 24.253 12.519 27.841 Atomic orbital electron populations 1.23106 0.78177 1.04378 1.01197 1.86189 1.21440 1.26281 1.87934 1.18944 0.91770 0.84538 0.94727 1.21269 1.00192 0.92340 1.09422 1.20999 0.94759 0.96996 0.96389 1.21071 0.93902 0.98494 1.04556 1.20999 1.00189 0.90840 0.95855 1.19337 0.90611 0.95794 1.08691 1.19935 0.98727 0.91252 0.84021 1.44337 1.54585 1.23896 1.10134 1.17894 0.84864 0.84591 0.86638 1.67956 1.19637 1.14093 1.33179 1.24408 0.89249 0.86411 0.92286 1.67500 1.27585 1.35257 0.98114 1.18887 0.92035 0.89682 0.87432 1.19572 1.16193 1.04412 0.95244 1.23373 1.00506 0.99168 0.89115 1.76930 1.08623 0.98459 1.21818 1.48919 1.40012 1.20870 1.02144 1.20069 0.93938 0.80567 0.93567 1.21117 1.02529 0.94111 1.39720 0.90415 1.24772 0.97307 0.95224 0.95168 1.69875 1.35637 1.02682 1.44394 0.86871 0.84461 0.78820 0.79785 1.19491 1.20568 1.18865 0.92542 0.92662 0.87955 0.85338 0.85769 0.85711 0.85011 0.90677 0.90271 0.75532 0.78823 0.80039 0.93111 0.93098 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.06 9.73 -19.44 -0.19 -3.25 16 3 C 0.15 1.35 6.66 -39.22 -0.26 1.09 16 4 C -0.21 -1.60 9.04 -39.43 -0.36 -1.95 16 5 C -0.07 -0.48 10.04 -39.60 -0.40 -0.88 16 6 C -0.16 -1.08 10.04 -39.56 -0.40 -1.48 16 7 C -0.06 -0.46 9.67 -39.61 -0.38 -0.84 16 8 C -0.14 -1.30 5.26 -104.47 -0.55 -1.85 16 9 C 0.18 1.94 5.52 -5.19 -0.03 1.91 16 10 N -0.70 -8.46 5.67 -61.26 -0.35 -8.81 16 11 C 0.51 8.22 7.55 -154.85 -1.17 7.05 16 12 N -0.62 -10.11 9.69 -13.62 -0.13 -10.24 16 13 C 0.37 6.33 12.24 -92.12 -1.13 5.20 16 14 N -0.56 -11.90 10.47 -13.97 -0.15 -12.05 16 15 C 0.37 8.20 8.04 -156.23 -1.26 6.94 16 16 C -0.34 -6.27 6.14 -106.82 -0.66 -6.93 16 17 C 0.07 1.28 11.87 -17.11 -0.20 1.08 16 18 N -0.24 -5.25 12.45 30.80 0.38 -4.87 16 19 N -0.33 -8.00 3.63 -61.64 -0.22 -8.22 16 20 C 0.24 6.07 5.26 -5.19 -0.03 6.04 16 21 C -0.54 -15.83 9.94 -34.44 -0.34 -16.17 16 22 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 23 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 24 N -0.89 -27.36 13.96 55.43 0.77 -26.58 16 25 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 16 26 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 29 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 30 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.13 0.73 6.30 -52.49 -0.33 0.40 16 33 H 0.12 0.55 8.06 -52.48 -0.42 0.12 16 34 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 35 H 0.13 0.81 8.04 -52.49 -0.42 0.39 16 36 H 0.08 0.76 8.01 -51.93 -0.42 0.35 16 37 H 0.08 0.96 7.86 -51.93 -0.41 0.55 16 38 H 0.41 4.35 8.33 -40.82 -0.34 4.01 16 39 H 0.20 2.50 8.06 -52.49 -0.42 2.08 16 40 H 0.18 2.21 8.06 -52.48 -0.42 1.79 16 41 H 0.05 1.26 7.20 -51.93 -0.37 0.89 16 42 H 0.05 1.28 7.57 -51.93 -0.39 0.88 16 43 H 0.27 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 371.75 15.07 5.60 5.60 Total: -1.00 -35.85 371.75 -10.39 -46.24 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.18 Total: 3.11 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -6.26 Total: 2.59 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: 0.31 Total: -70.76 kcal Atomic # 8 Polarization: -3.06 SS G_CDS: -0.19 Total: -3.25 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.85 -10.39 -46.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.227 kcal (2) G-P(sol) polarization free energy of solvation -35.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.79 seconds