Wall clock time and date at job start Tue Mar 31 2020 07:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00120 * 2 1 4 4 C 1.50694 * 109.47206 * 180.02562 * 3 2 1 5 5 C 1.38309 * 119.96700 * 270.02496 * 4 3 2 6 6 C 1.38268 * 120.15456 * 179.97438 * 5 4 3 7 7 C 1.38130 * 120.07172 * 359.74340 * 6 5 4 8 8 C 1.38887 * 119.92035 * 0.50745 * 7 6 5 9 9 N 1.39790 * 120.07203 * 179.76967 * 8 7 6 10 10 C 1.38218 * 119.99915 * 326.93479 * 9 8 7 11 11 N 1.32876 * 120.81119 * 354.74019 * 10 9 8 12 12 C 1.32115 * 121.18978 * 179.97438 * 11 10 9 13 13 N 1.31514 * 122.65198 * 0.02562 * 12 11 10 14 14 C 1.33186 * 120.68214 * 359.97438 * 13 12 11 15 15 C 1.40810 * 120.81569 * 174.45612 * 10 9 8 16 16 C 1.41158 * 134.69756 * 0.71596 * 15 10 9 17 17 N 1.30261 * 108.47121 * 179.52010 * 16 15 10 18 18 N 1.36323 * 134.61781 * 179.97438 * 14 13 12 19 19 C 1.46494 * 125.87249 * 0.02562 * 18 14 13 20 20 C 1.50695 * 109.47359 * 90.00028 * 19 18 14 21 21 H 1.07994 * 120.00159 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00375 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99901 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00167 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46953 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.46848 * 120.00033 * 24 22 20 27 27 H 1.48502 * 109.46900 * 239.99977 * 24 22 20 28 28 C 1.38086 * 119.96491 * 90.00176 * 4 3 2 29 29 H 1.09002 * 109.46554 * 299.99440 * 1 2 3 30 30 H 1.09000 * 109.47566 * 59.99491 * 1 2 3 31 31 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46844 * 60.00496 * 3 2 1 33 33 H 1.09000 * 109.47604 * 300.00331 * 3 2 1 34 34 H 1.08004 * 119.92305 * 359.95571 * 5 4 3 35 35 H 1.07999 * 119.96999 * 180.02562 * 6 5 4 36 36 H 1.07993 * 120.03785 * 180.27505 * 7 6 5 37 37 H 0.97000 * 120.00034 * 147.21674 * 9 8 7 38 38 H 1.08006 * 118.67149 * 179.97438 * 12 11 10 39 39 H 1.08005 * 125.76572 * 359.24759 * 16 15 10 40 40 H 1.09005 * 109.47360 * 210.00067 * 19 18 14 41 41 H 1.09000 * 109.47490 * 330.00049 * 19 18 14 42 42 H 0.96991 * 119.99928 * 180.02562 * 23 22 20 43 43 H 1.08002 * 120.03522 * 0.04713 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2016 1.1311 1.1973 6 6 5.5799 1.0214 1.2012 7 6 6.2729 0.9613 0.0078 8 6 5.5844 1.0219 -1.1969 9 7 6.2829 0.9662 -2.4064 10 6 7.5477 1.5157 -2.5000 11 7 8.0732 2.1911 -1.4835 12 6 9.2816 2.7191 -1.5646 13 7 10.0315 2.6131 -2.6398 14 6 9.5935 1.9550 -3.7117 15 6 8.3131 1.3686 -3.6727 16 6 8.1043 0.7484 -4.9234 17 7 9.1650 0.9314 -5.6571 18 7 10.1112 1.6758 -4.9415 19 6 11.4306 2.0837 -5.4303 20 6 12.4432 1.0211 -5.0891 21 1 12.1349 0.1311 -4.5607 22 6 13.7634 1.1849 -5.4516 23 7 14.1391 2.2689 -6.0947 24 14 15.0184 -0.1327 -5.0293 25 1 14.3463 -1.2438 -4.3091 26 1 15.6314 -0.6509 -6.2786 27 1 16.0754 0.4498 -4.1639 28 6 4.1995 1.1322 -1.1972 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.6619 1.1741 2.1318 35 1 6.1150 0.9781 2.1383 36 1 7.3490 0.8712 0.0116 37 1 5.8784 0.5454 -3.1812 38 1 9.6688 3.2603 -0.7140 39 1 7.2168 0.2091 -5.2202 40 1 11.3928 2.2156 -6.5116 41 1 11.7179 3.0238 -4.9594 42 1 15.0677 2.3840 -6.3500 43 1 3.6609 1.1758 -2.1323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:43 Heat of formation + Delta-G solvation = 107.681442 kcal Electronic energy + Delta-G solvation = -27521.736846 eV Core-core repulsion = 23569.098149 eV Total energy + Delta-G solvation = -3952.638697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 5.18 seconds Orbital eigenvalues (eV) -41.58181 -39.93859 -38.57898 -37.87669 -36.14155 -33.81421 -32.49566 -32.03791 -31.37634 -30.57674 -28.72944 -27.57601 -27.20909 -25.63121 -24.10839 -23.83414 -22.82868 -22.24009 -21.42219 -19.97743 -18.25159 -17.82151 -16.82163 -16.73063 -16.66052 -16.50615 -16.20414 -16.01909 -15.37066 -15.10491 -14.75570 -14.62050 -14.25226 -13.99193 -13.76561 -13.58550 -13.31482 -13.01010 -12.73479 -12.59684 -12.22464 -11.92941 -11.73376 -11.70581 -11.64183 -11.17944 -11.08968 -11.00265 -10.81204 -10.32054 -10.19480 -10.10118 -10.06921 -9.67184 -9.01492 -8.85124 -8.72197 -8.63000 -8.17528 -7.58599 -6.25128 -4.31758 0.91543 1.19916 1.44917 1.84844 2.78550 2.91541 2.99493 3.21658 3.28860 3.35263 3.38482 3.90371 4.25605 4.31577 4.41454 4.58237 4.64022 4.64848 4.77866 4.88363 4.93032 4.95764 5.02248 5.05060 5.10509 5.12391 5.26781 5.28916 5.37258 5.48320 5.60803 5.70406 5.82275 6.22022 6.24444 6.33396 6.46224 6.56921 6.72029 6.76567 6.94564 6.99860 7.03299 7.16623 7.41077 7.66746 7.80942 7.86922 8.12528 8.64300 8.73412 9.33563 10.83178 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024532 B = 0.002146 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.115361 B =13041.855970 C =13453.639038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.105 3.895 4 C -0.077 4.077 5 C -0.121 4.121 6 C -0.103 4.103 7 C -0.104 4.104 8 C 0.164 3.836 9 N -0.647 5.647 10 C 0.499 3.501 11 N -0.604 5.604 12 C 0.363 3.637 13 N -0.545 5.545 14 C 0.363 3.637 15 C -0.328 4.328 16 C 0.067 3.933 17 N -0.237 5.237 18 N -0.330 5.330 19 C 0.262 3.738 20 C -0.534 4.534 21 H 0.062 0.938 22 C 0.066 3.934 23 N -0.890 5.890 24 Si 0.908 3.092 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C -0.132 4.132 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.141 0.859 37 H 0.420 0.580 38 H 0.198 0.802 39 H 0.185 0.815 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.268 0.732 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.889 -1.283 12.903 28.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.028 3.972 4 C -0.078 4.078 5 C -0.140 4.140 6 C -0.121 4.121 7 C -0.125 4.125 8 C 0.068 3.932 9 N -0.272 5.272 10 C 0.249 3.751 11 N -0.333 5.333 12 C 0.069 3.931 13 N -0.269 5.269 14 C 0.115 3.885 15 C -0.346 4.346 16 C -0.128 4.128 17 N -0.053 5.053 18 N -0.116 5.116 19 C 0.146 3.854 20 C -0.573 4.573 21 H 0.080 0.920 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.735 3.265 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.153 4.153 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.159 0.841 37 H 0.257 0.743 38 H 0.215 0.785 39 H 0.202 0.798 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -23.393 -1.005 12.290 26.444 hybrid contribution -0.227 -0.822 -0.136 0.864 sum -23.620 -1.828 12.153 26.626 Atomic orbital electron populations 1.22760 0.81061 1.02862 0.99975 1.87988 1.19511 1.27518 1.95395 1.21329 0.89952 0.85012 1.00859 1.19202 0.93515 1.02043 0.93006 1.20946 0.94352 1.01555 0.97142 1.21005 0.93790 0.99491 0.97863 1.21287 1.01403 0.99207 0.90554 1.17623 0.90470 0.99375 0.85685 1.41798 1.13931 1.59301 1.12147 1.17874 0.84127 0.85578 0.87522 1.68108 1.16411 1.19283 1.29459 1.24521 0.84141 0.90645 0.93750 1.67525 1.37339 1.22511 0.99509 1.18947 0.88718 0.92316 0.88526 1.19594 0.99828 1.16705 0.98439 1.23418 0.98186 1.00583 0.90629 1.76964 0.98208 1.10065 1.20034 1.49511 1.15280 1.39925 1.06903 1.19840 0.71917 0.96901 0.96770 1.21272 0.92484 1.04898 1.38604 0.91963 1.24905 0.98138 0.96137 0.94520 1.69924 1.17953 1.26324 1.38619 0.86277 0.80737 0.81243 0.78263 1.19687 1.20621 1.20557 1.20669 0.92330 1.04189 0.98149 0.94050 0.94037 0.89552 0.92358 0.92491 0.86234 0.85640 0.84101 0.74262 0.78518 0.79840 0.92685 0.92152 0.92271 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.55 10.69 -35.23 -0.38 -3.93 16 3 C 0.10 0.83 6.06 36.00 0.22 1.04 16 4 C -0.08 -0.75 5.51 -104.65 -0.58 -1.32 16 5 C -0.12 -1.14 9.70 -39.54 -0.38 -1.52 16 6 C -0.10 -1.03 10.04 -39.61 -0.40 -1.43 16 7 C -0.10 -1.24 8.60 -39.38 -0.34 -1.57 16 8 C 0.16 1.91 6.31 -83.73 -0.53 1.38 16 9 N -0.65 -7.60 5.46 -9.67 -0.05 -7.66 16 10 C 0.50 7.61 7.27 -154.73 -1.13 6.48 16 11 N -0.60 -9.32 7.24 -13.59 -0.10 -9.42 16 12 C 0.36 5.86 12.24 -92.12 -1.13 4.73 16 13 N -0.55 -11.15 10.47 -13.96 -0.15 -11.30 16 14 C 0.36 7.82 8.04 -156.23 -1.26 6.56 16 15 C -0.33 -5.79 6.14 -106.82 -0.66 -6.45 16 16 C 0.07 1.10 11.88 -17.11 -0.20 0.90 16 17 N -0.24 -4.96 12.45 30.80 0.38 -4.57 16 18 N -0.33 -7.74 3.63 -61.64 -0.22 -7.97 16 19 C 0.26 6.91 6.19 -5.20 -0.03 6.87 16 20 C -0.53 -15.10 9.39 -34.44 -0.32 -15.42 16 21 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 22 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 23 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 24 Si 0.91 21.59 29.54 -169.99 -5.02 16.57 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C -0.13 -1.34 9.61 -39.38 -0.38 -1.72 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 34 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.14 1.85 6.26 -52.49 -0.33 1.52 16 37 H 0.42 3.78 8.69 -40.82 -0.35 3.43 16 38 H 0.20 2.37 8.06 -52.48 -0.42 1.95 16 39 H 0.18 2.00 8.06 -52.48 -0.42 1.58 16 40 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -33.53 375.78 -10.53 -44.06 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.30 Total: 1.80 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -6.09 Total: 1.57 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: 0.60 Total: -65.73 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.38 Total: -3.93 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.53 -10.53 -44.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.738 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.18 seconds