Wall clock time and date at job start Tue Mar 31 2020 07:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00120 * 2 1 4 4 C 1.50694 * 109.47206 * 180.02562 * 3 2 1 5 5 C 1.38309 * 119.96700 * 270.02496 * 4 3 2 6 6 C 1.38268 * 120.15456 * 179.97438 * 5 4 3 7 7 C 1.38130 * 120.07172 * 359.74340 * 6 5 4 8 8 C 1.38887 * 119.92035 * 0.50745 * 7 6 5 9 9 N 1.39790 * 120.07203 * 179.76967 * 8 7 6 10 10 C 1.38218 * 119.99915 * 326.93479 * 9 8 7 11 11 N 1.32876 * 120.81119 * 354.74019 * 10 9 8 12 12 C 1.32115 * 121.18978 * 179.97438 * 11 10 9 13 13 N 1.31514 * 122.65198 * 0.02562 * 12 11 10 14 14 C 1.33186 * 120.68214 * 359.97438 * 13 12 11 15 15 C 1.40810 * 120.81569 * 174.45612 * 10 9 8 16 16 C 1.41158 * 134.69756 * 0.71596 * 15 10 9 17 17 N 1.30261 * 108.47121 * 179.52010 * 16 15 10 18 18 N 1.36323 * 134.61781 * 179.97438 * 14 13 12 19 19 C 1.46494 * 125.87249 * 0.02562 * 18 14 13 20 20 C 1.50695 * 109.47359 * 90.00028 * 19 18 14 21 21 H 1.07994 * 120.00159 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00375 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99901 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00167 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46953 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.46848 * 120.00033 * 24 22 20 27 27 H 1.48502 * 109.46900 * 239.99977 * 24 22 20 28 28 C 1.38086 * 119.96491 * 90.00176 * 4 3 2 29 29 H 1.09002 * 109.46554 * 299.99440 * 1 2 3 30 30 H 1.09000 * 109.47566 * 59.99491 * 1 2 3 31 31 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46844 * 60.00496 * 3 2 1 33 33 H 1.09000 * 109.47604 * 300.00331 * 3 2 1 34 34 H 1.08004 * 119.92305 * 359.95571 * 5 4 3 35 35 H 1.07999 * 119.96999 * 180.02562 * 6 5 4 36 36 H 1.07993 * 120.03785 * 180.27505 * 7 6 5 37 37 H 0.97000 * 120.00034 * 147.21674 * 9 8 7 38 38 H 1.08006 * 118.67149 * 179.97438 * 12 11 10 39 39 H 1.08005 * 125.76572 * 359.24759 * 16 15 10 40 40 H 1.09005 * 109.47360 * 210.00067 * 19 18 14 41 41 H 1.09000 * 109.47490 * 330.00049 * 19 18 14 42 42 H 0.96991 * 119.99928 * 180.02562 * 23 22 20 43 43 H 1.08002 * 120.03522 * 0.04713 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2016 1.1311 1.1973 6 6 5.5799 1.0214 1.2012 7 6 6.2729 0.9613 0.0078 8 6 5.5844 1.0219 -1.1969 9 7 6.2829 0.9662 -2.4064 10 6 7.5477 1.5157 -2.5000 11 7 8.0732 2.1911 -1.4835 12 6 9.2816 2.7191 -1.5646 13 7 10.0315 2.6131 -2.6398 14 6 9.5935 1.9550 -3.7117 15 6 8.3131 1.3686 -3.6727 16 6 8.1043 0.7484 -4.9234 17 7 9.1650 0.9314 -5.6571 18 7 10.1112 1.6758 -4.9415 19 6 11.4306 2.0837 -5.4303 20 6 12.4432 1.0211 -5.0891 21 1 12.1349 0.1311 -4.5607 22 6 13.7634 1.1849 -5.4516 23 7 14.1391 2.2689 -6.0947 24 14 15.0184 -0.1327 -5.0293 25 1 14.3463 -1.2438 -4.3091 26 1 15.6314 -0.6509 -6.2786 27 1 16.0754 0.4498 -4.1639 28 6 4.1995 1.1322 -1.1972 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.6619 1.1741 2.1318 35 1 6.1150 0.9781 2.1383 36 1 7.3490 0.8712 0.0116 37 1 5.8784 0.5454 -3.1812 38 1 9.6688 3.2603 -0.7140 39 1 7.2168 0.2091 -5.2202 40 1 11.3928 2.2156 -6.5116 41 1 11.7179 3.0238 -4.9594 42 1 15.0677 2.3840 -6.3500 43 1 3.6609 1.1758 -2.1323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:40 Heat of formation + Delta-G solvation = 88.229304 kcal Electronic energy + Delta-G solvation = -27522.580354 eV Core-core repulsion = 23569.098149 eV Total energy + Delta-G solvation = -3953.482205 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = -0.12 seconds Orbital eigenvalues (eV) -42.96651 -40.85512 -39.75465 -38.62014 -37.17102 -35.75141 -33.97051 -33.08878 -32.70380 -31.75456 -29.85603 -29.11123 -28.08005 -26.23826 -25.61376 -25.34640 -24.21444 -23.17705 -22.48141 -21.27485 -19.55036 -19.00478 -18.83289 -17.90109 -17.67592 -17.26993 -17.09962 -16.84499 -16.62288 -16.53485 -15.86981 -15.63697 -15.46591 -15.20057 -15.05777 -14.84040 -14.55303 -14.14858 -13.92039 -13.68623 -13.44071 -13.12087 -13.06218 -12.88240 -12.77094 -12.53814 -12.38696 -12.31656 -12.24297 -11.99090 -11.82534 -11.56898 -11.07186 -10.77128 -10.59524 -10.14950 -10.12285 -9.72368 -9.67533 -8.69993 -8.37069 -6.53946 -0.26732 0.27327 0.42722 0.69326 1.29822 1.34248 1.35789 1.49029 1.56970 1.82681 2.30520 2.68118 2.92306 2.94224 3.16669 3.26877 3.32358 3.53415 3.65565 3.93747 3.99218 4.01261 4.23113 4.32782 4.39579 4.47459 4.50069 4.60153 4.61537 4.67303 4.78449 4.83571 4.86662 4.92709 5.07934 5.17483 5.38211 5.45157 5.49048 5.52249 5.68798 5.71708 5.75950 5.83956 6.02320 6.17475 6.26355 6.49922 6.52120 6.70131 7.15541 7.34475 8.70770 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024532 B = 0.002146 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.115361 B =13041.855970 C =13453.639038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.104 3.896 4 C -0.084 4.084 5 C -0.119 4.119 6 C -0.106 4.106 7 C -0.120 4.120 8 C 0.142 3.858 9 N -0.626 5.626 10 C 0.510 3.490 11 N -0.600 5.600 12 C 0.373 3.627 13 N -0.594 5.594 14 C 0.338 3.662 15 C -0.336 4.336 16 C 0.100 3.900 17 N -0.284 5.284 18 N -0.364 5.364 19 C 0.284 3.716 20 C -0.551 4.551 21 H 0.046 0.954 22 C 0.019 3.981 23 N -0.919 5.919 24 Si 0.976 3.024 25 H -0.274 1.274 26 H -0.268 1.268 27 H -0.269 1.269 28 C -0.129 4.129 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.125 0.875 37 H 0.434 0.566 38 H 0.234 0.766 39 H 0.242 0.758 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.274 0.726 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.659 -2.327 14.739 31.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.028 3.972 4 C -0.085 4.085 5 C -0.137 4.137 6 C -0.125 4.125 7 C -0.141 4.141 8 C 0.047 3.953 9 N -0.252 5.252 10 C 0.258 3.742 11 N -0.329 5.329 12 C 0.081 3.919 13 N -0.320 5.320 14 C 0.091 3.909 15 C -0.353 4.353 16 C -0.095 4.095 17 N -0.098 5.098 18 N -0.151 5.151 19 C 0.165 3.835 20 C -0.590 4.590 21 H 0.064 0.936 22 C -0.181 4.181 23 N -0.557 5.557 24 Si 0.799 3.201 25 H -0.199 1.199 26 H -0.193 1.193 27 H -0.194 1.194 28 C -0.150 4.150 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.143 0.857 37 H 0.274 0.726 38 H 0.250 0.750 39 H 0.258 0.742 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -26.250 -2.065 14.141 29.888 hybrid contribution 0.324 -0.489 -0.488 0.763 sum -25.926 -2.554 13.653 29.412 Atomic orbital electron populations 1.22929 0.79448 1.03711 1.01048 1.87937 1.21349 1.28234 1.95635 1.21395 0.88622 0.84920 1.02258 1.19543 0.94830 1.01233 0.92892 1.21266 0.94194 1.00141 0.98149 1.21228 0.94313 0.98945 0.97971 1.21289 1.00828 1.00405 0.91592 1.17763 0.91131 1.01137 0.85229 1.41759 1.12418 1.57949 1.13075 1.17948 0.85000 0.84767 0.86463 1.68290 1.16016 1.19405 1.29155 1.25285 0.83934 0.89300 0.93360 1.67540 1.39331 1.24623 1.00550 1.19347 0.90291 0.93057 0.88240 1.19679 0.98830 1.17057 0.99731 1.24333 0.98135 0.97908 0.89149 1.76913 0.99366 1.12193 1.21372 1.49124 1.15176 1.42423 1.08337 1.19160 0.73885 0.95474 0.95003 1.21403 0.93697 1.04860 1.39016 0.93600 1.25796 0.99918 0.98355 0.94067 1.70015 1.18757 1.27859 1.39047 0.85248 0.78081 0.78253 0.78495 1.19917 1.19254 1.19401 1.20871 0.91627 1.03182 0.99304 0.92854 0.93067 0.88931 0.90791 0.91334 0.84117 0.83927 0.85708 0.72580 0.75022 0.74175 0.94920 0.94774 0.91678 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -6.44 10.69 -148.98 -1.59 -8.03 16 3 C 0.10 1.30 6.06 71.23 0.43 1.74 16 4 C -0.08 -1.38 5.51 -19.89 -0.11 -1.49 16 5 C -0.12 -1.89 9.70 22.29 0.22 -1.67 16 6 C -0.11 -1.89 10.04 22.25 0.22 -1.66 16 7 C -0.12 -2.66 8.60 22.40 0.19 -2.47 16 8 C 0.14 2.98 6.31 38.19 0.24 3.22 16 9 N -0.63 -13.26 5.46 -184.49 -1.01 -14.26 16 10 C 0.51 14.87 7.27 133.60 0.97 15.84 16 11 N -0.60 -17.93 7.24 -196.92 -1.43 -19.35 16 12 C 0.37 11.99 12.24 180.87 2.21 14.20 16 13 N -0.59 -25.17 10.47 -198.09 -2.07 -27.25 16 14 C 0.34 15.08 8.04 134.15 1.08 16.16 16 15 C -0.34 -11.70 6.14 -21.29 -0.13 -11.83 16 16 C 0.10 3.16 11.88 85.64 1.02 4.18 16 17 N -0.28 -12.17 12.45 -56.46 -0.70 -12.88 16 18 N -0.36 -18.04 3.63 -348.94 -1.27 -19.30 16 19 C 0.28 16.02 6.19 85.63 0.53 16.55 16 20 C -0.55 -32.75 9.39 25.60 0.24 -32.51 16 21 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 22 C 0.02 1.12 5.46 84.66 0.46 1.58 16 23 N -0.92 -54.36 13.29 21.45 0.28 -54.08 16 24 Si 0.98 45.02 29.54 68.60 2.03 47.05 16 25 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 28 C -0.13 -2.25 9.61 22.40 0.22 -2.04 16 29 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.68 8.09 -2.39 -0.02 0.67 16 33 H 0.07 0.69 8.08 -2.39 -0.02 0.67 16 34 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.13 3.15 6.26 -2.91 -0.02 3.13 16 37 H 0.43 6.43 8.69 -92.71 -0.81 5.63 16 38 H 0.23 5.35 8.06 -2.91 -0.02 5.32 16 39 H 0.24 4.35 8.06 -2.91 -0.02 4.33 16 40 H 0.03 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.03 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -77.19 375.78 3.54 -73.65 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.25 Total: 13.21 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 9.04 Total: 21.25 kcal Atomic # 7 Polarization: -140.93 SS G_CDS: -6.19 Total: -147.12 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -1.59 Total: -8.03 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -77.19 3.54 -73.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.881 kcal (2) G-P(sol) polarization free energy of solvation -77.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.12 seconds