Wall clock time and date at job start Tue Mar 31 2020 07:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99812 * 2 1 4 4 H 1.48504 * 109.47057 * 269.99819 * 3 2 1 5 5 H 1.48501 * 109.47125 * 29.99756 * 3 2 1 6 6 H 1.48499 * 109.47385 * 149.99987 * 3 2 1 7 7 C 1.37877 * 120.00560 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00233 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99464 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.46795 * 179.97438 * 9 7 2 11 11 N 1.40060 * 125.87760 * 269.99434 * 10 9 7 12 12 C 1.30245 * 109.69764 * 179.97438 * 11 10 9 13 13 C 1.41159 * 108.47153 * 0.02562 * 12 11 10 14 14 C 1.36322 * 125.87345 * 89.99853 * 10 9 7 15 15 N 1.33194 * 134.61165 * 0.02562 * 14 10 9 16 16 C 1.31507 * 120.68207 * 179.97438 * 15 14 10 17 17 N 1.32127 * 122.64077 * 359.66979 * 16 15 14 18 18 C 1.32861 * 121.19834 * 0.63349 * 17 16 15 19 19 N 1.38100 * 120.81727 * 179.70004 * 18 17 16 20 20 C 1.46503 * 119.99920 * 359.71839 * 19 18 17 21 21 C 1.53003 * 109.47599 * 179.97438 * 20 19 18 22 22 N 1.46489 * 109.47486 * 179.97438 * 21 20 19 23 23 C 1.39001 * 120.00245 * 180.02562 * 22 21 20 24 24 C 1.39146 * 119.70404 * 359.97438 * 23 22 21 25 25 C 1.38295 * 119.09401 * 179.97438 * 24 23 22 26 26 C 1.38884 * 118.51011 * 0.02562 * 25 24 23 27 27 C 1.38022 * 119.32992 * 0.27628 * 26 25 24 28 28 N 1.31980 * 120.85123 * 359.44533 * 27 26 25 29 29 H 0.97000 * 120.00026 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.46943 * 59.99375 * 9 7 2 31 31 H 1.09000 * 109.46584 * 299.99786 * 9 7 2 32 32 H 1.08005 * 125.76232 * 179.97438 * 12 11 10 33 33 H 1.07995 * 118.67993 * 180.02562 * 16 15 14 34 34 H 0.96994 * 120.00582 * 179.71555 * 19 18 17 35 35 H 1.09005 * 109.47349 * 60.00014 * 20 19 18 36 36 H 1.08994 * 109.47248 * 300.00278 * 20 19 18 37 37 H 1.09005 * 109.46498 * 59.99812 * 21 20 19 38 38 H 1.08994 * 109.47308 * 300.00560 * 21 20 19 39 39 H 0.97003 * 119.99877 * 0.02562 * 22 21 20 40 40 H 1.08000 * 120.44826 * 0.02676 * 24 23 22 41 41 H 1.08000 * 120.74269 * 180.02562 * 25 24 23 42 42 H 1.08002 * 120.33299 * 179.97438 * 26 25 24 43 43 H 1.07989 * 119.57332 * 179.70393 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 7 2.7364 -4.2365 -1.1343 12 6 3.5498 -5.1868 -0.7714 13 6 3.5864 -5.2298 0.6391 14 6 2.7223 -4.2197 1.1052 15 7 2.5789 -4.0526 2.4188 16 6 3.2314 -4.8163 3.2676 17 7 4.0470 -5.7799 2.8777 18 6 4.2610 -6.0210 1.5888 19 7 5.1199 -7.0262 1.1901 20 6 5.8129 -7.8384 2.1934 21 6 6.6956 -8.8724 1.4916 22 7 7.3890 -9.6840 2.4948 23 6 8.2535 -10.6958 2.0936 24 6 8.4555 -10.9328 0.7375 25 6 9.3188 -11.9422 0.3525 26 6 9.9534 -12.6843 1.3401 27 6 9.7018 -12.3991 2.6668 28 7 8.8768 -11.4260 3.0053 29 1 -0.4850 0.8400 0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6241 -2.5566 0.8903 32 1 4.1022 -5.8334 -1.4372 33 1 3.0907 -4.6529 4.3258 34 1 5.2643 -7.1947 0.2459 35 1 5.0793 -8.3504 2.8163 36 1 6.4327 -7.1944 2.8171 37 1 7.4292 -8.3607 0.8685 38 1 6.0754 -9.5163 0.8681 39 1 7.2447 -9.5154 3.4391 40 1 7.9456 -10.3359 -0.0043 41 1 9.4954 -12.1488 -0.6928 42 1 10.6332 -13.4798 1.0725 43 1 10.1894 -12.9768 3.4380 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:18 Heat of formation + Delta-G solvation = 139.590222 kcal Electronic energy + Delta-G solvation = -26835.075452 eV Core-core repulsion = 22916.113175 eV Total energy + Delta-G solvation = -3918.962277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.82239 -41.01278 -39.90661 -38.20557 -36.53167 -35.69697 -33.90720 -33.26214 -32.94411 -31.88446 -30.52643 -29.24010 -28.34495 -25.64103 -25.17352 -24.84524 -24.01407 -23.25262 -22.70541 -21.57153 -19.40521 -18.96010 -18.80918 -18.33945 -17.87129 -17.40983 -16.86129 -16.75586 -16.46599 -16.36363 -16.05832 -15.59220 -15.18453 -15.16243 -15.00236 -14.95874 -14.71034 -14.66397 -14.02461 -13.80751 -13.67270 -13.44222 -13.04497 -12.83794 -12.73958 -12.55774 -12.39083 -12.34433 -12.29494 -11.80385 -11.51627 -11.15585 -10.76134 -10.65203 -10.59008 -10.33150 -10.09268 -9.77531 -9.02461 -8.63681 -8.35824 -6.52844 -0.04634 0.43317 0.51753 0.60688 1.32366 1.35805 1.38530 1.49067 1.64092 1.69251 2.31371 2.50834 2.93973 3.00263 3.06969 3.26669 3.39579 3.60580 3.72250 3.80226 3.85104 4.08641 4.10647 4.10889 4.31442 4.42575 4.43695 4.46411 4.55325 4.82352 4.86193 4.88627 4.90577 4.93663 5.13411 5.20626 5.47343 5.47935 5.54981 5.71043 5.73468 5.77678 5.92004 6.09151 6.10583 6.52520 6.57735 6.60260 6.78534 7.16744 7.29177 7.44315 8.71789 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.026282 B = 0.001755 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.106382 B =15947.254318 C =16215.604161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.552 4.552 8 H 0.046 0.954 9 C 0.284 3.716 10 N -0.367 5.367 11 N -0.290 5.290 12 C 0.102 3.898 13 C -0.344 4.344 14 C 0.335 3.665 15 N -0.604 5.604 16 C 0.376 3.624 17 N -0.615 5.615 18 C 0.520 3.480 19 N -0.679 5.679 20 C 0.127 3.873 21 C 0.126 3.874 22 N -0.724 5.724 23 C 0.384 3.616 24 C -0.248 4.248 25 C -0.040 4.040 26 C -0.239 4.239 27 C 0.130 3.870 28 N -0.578 5.578 29 H 0.274 0.726 30 H 0.031 0.969 31 H 0.032 0.968 32 H 0.244 0.756 33 H 0.230 0.770 34 H 0.427 0.573 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.406 0.594 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.153 0.847 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.588 -26.035 1.934 32.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.181 4.181 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.591 4.591 8 H 0.064 0.936 9 C 0.165 3.835 10 N -0.153 5.153 11 N -0.105 5.105 12 C -0.093 4.093 13 C -0.362 4.362 14 C 0.088 3.912 15 N -0.332 5.332 16 C 0.083 3.917 17 N -0.346 5.346 18 C 0.265 3.735 19 N -0.312 5.312 20 C 0.003 3.997 21 C 0.001 3.999 22 N -0.357 5.357 23 C 0.148 3.852 24 C -0.273 4.273 25 C -0.065 4.065 26 C -0.261 4.261 27 C -0.026 4.026 28 N -0.297 5.297 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.260 0.740 33 H 0.246 0.754 34 H 0.267 0.733 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.242 0.758 40 H 0.166 0.834 41 H 0.174 0.826 42 H 0.171 0.829 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 18.398 -24.757 2.611 30.955 hybrid contribution 0.356 0.576 -0.825 1.067 sum 18.754 -24.182 1.786 30.654 Atomic orbital electron populations 1.70010 1.07380 1.28890 1.49446 1.25794 0.95903 1.02851 0.93568 0.85303 0.78226 0.77788 0.78808 1.19172 1.19435 1.19882 1.21392 0.92898 0.91189 1.53592 0.93572 1.19113 0.85975 0.80928 0.97441 1.49096 1.37240 1.28507 1.00477 1.76893 1.14124 1.10447 1.09077 1.24330 0.96413 0.95979 0.92548 1.19732 1.12551 1.07654 0.96248 1.19381 0.92046 0.90981 0.88777 1.67524 1.31885 1.33370 1.00381 1.25161 0.83611 0.82753 1.00151 1.68093 1.26631 1.25263 1.14596 1.17901 0.83914 0.84171 0.87511 1.43980 1.44409 1.32429 1.10424 1.21314 0.95334 0.92286 0.90789 1.21414 0.95289 0.92244 0.90942 1.44198 1.47175 1.34729 1.09638 1.18581 0.88814 0.87981 0.89777 1.21688 1.06479 1.04427 0.94726 1.21740 0.91740 0.91797 1.01258 1.22146 1.05635 1.04673 0.93655 1.22821 0.91725 0.91531 0.96556 1.67126 1.13615 1.10315 1.38596 0.91703 0.95078 0.94999 0.74029 0.75440 0.73332 0.90793 0.91000 0.89968 0.89803 0.75787 0.83433 0.82578 0.82940 0.81150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.53 13.29 21.45 0.28 -54.25 16 2 C 0.02 1.13 5.46 84.66 0.46 1.59 16 3 Si 0.98 44.95 29.54 68.60 2.03 46.98 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.55 -32.87 9.39 25.60 0.24 -32.63 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.28 16.12 6.19 85.64 0.53 16.65 16 10 N -0.37 -18.15 3.63 -348.94 -1.27 -19.41 16 11 N -0.29 -12.30 12.45 -56.47 -0.70 -13.00 16 12 C 0.10 3.10 11.87 85.65 1.02 4.11 16 13 C -0.34 -11.56 6.14 -21.29 -0.13 -11.69 16 14 C 0.33 14.87 8.04 134.14 1.08 15.95 16 15 N -0.60 -25.72 10.47 -198.10 -2.07 -27.79 16 16 C 0.38 12.02 12.24 180.87 2.21 14.24 16 17 N -0.61 -17.51 9.69 -197.01 -1.91 -19.42 16 18 C 0.52 13.79 7.55 133.65 1.01 14.80 16 19 N -0.68 -10.34 5.68 -343.99 -1.95 -12.29 16 20 C 0.13 1.51 5.85 86.38 0.50 2.02 16 21 C 0.13 1.01 5.00 86.38 0.43 1.44 16 22 N -0.72 -9.05 5.73 -345.09 -1.98 -11.03 16 23 C 0.38 6.13 7.65 133.07 1.02 7.15 16 24 C -0.25 -3.02 9.33 22.50 0.21 -2.81 16 25 C -0.04 -0.40 10.17 22.44 0.23 -0.17 16 26 C -0.24 -2.47 10.10 22.37 0.23 -2.25 16 27 C 0.13 1.78 11.17 84.62 0.95 2.73 16 28 N -0.58 -10.66 10.39 -193.26 -2.01 -12.67 16 29 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.03 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.24 3.89 8.06 -2.91 -0.02 3.87 16 33 H 0.23 5.29 8.06 -2.91 -0.02 5.27 16 34 H 0.43 3.87 8.34 -92.71 -0.77 3.09 16 35 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 0.52 7.93 -2.38 -0.02 0.50 16 38 H 0.08 0.50 7.93 -2.39 -0.02 0.48 16 39 H 0.41 5.16 8.60 -92.71 -0.80 4.36 16 40 H 0.15 1.14 6.71 -2.91 -0.02 1.12 16 41 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 42 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 43 H 0.17 1.45 8.06 -2.92 -0.02 1.42 16 Total: -1.00 -81.33 376.82 -0.09 -81.42 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -0.50 Total: 10.35 kcal Atomic # 6 Polarization: 21.15 SS G_CDS: 9.99 Total: 31.14 kcal Atomic # 7 Polarization: -158.27 SS G_CDS: -11.61 Total: -169.88 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -81.33 -0.09 -81.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.007 kcal (2) G-P(sol) polarization free energy of solvation -81.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds