Wall clock time and date at job start Tue Mar 31 2020 05:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42910 * 109.47038 * 2 1 4 4 C 1.35903 * 116.99803 * 179.97438 * 3 2 1 5 5 C 1.38921 * 119.97183 * 0.02562 * 4 3 2 6 6 C 1.38302 * 120.30235 * 179.97438 * 5 4 3 7 7 C 1.37925 * 120.23696 * 0.04824 * 6 5 4 8 8 C 1.39894 * 119.93220 * 359.97376 * 7 6 5 9 9 C 1.47116 * 120.14676 * 180.02562 * 8 7 6 10 10 C 1.35040 * 120.00162 * 218.54297 * 9 8 7 11 11 C 1.46267 * 119.99782 * 14.22970 * 10 9 8 12 12 O 1.21775 * 119.99924 * 6.42730 * 11 10 9 13 13 C 1.47648 * 120.00197 * 186.42430 * 11 10 9 14 14 C 1.39822 * 120.07449 * 359.71943 * 13 11 10 15 15 C 1.37641 * 119.91609 * 179.81055 * 14 13 11 16 16 C 1.39166 * 120.08086 * 0.45063 * 15 14 13 17 17 O 1.35557 * 119.92270 * 179.76617 * 16 15 14 18 18 C 1.34767 * 116.99938 * 173.70289 * 17 16 15 19 19 H 1.08000 * 120.00199 * 5.11266 * 18 17 16 20 20 C 1.38760 * 119.99933 * 185.11652 * 18 17 16 21 21 N 1.31479 * 119.99915 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99901 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47226 * 89.99829 * 22 20 18 24 24 H 1.48504 * 109.47099 * 209.99950 * 22 20 18 25 25 H 1.48499 * 109.47211 * 329.99813 * 22 20 18 26 26 C 1.39170 * 120.15486 * 359.78337 * 16 15 14 27 27 C 1.37635 * 120.07632 * 359.97438 * 26 16 15 28 28 C 1.38365 * 119.97118 * 179.72523 * 4 3 2 29 29 H 1.08997 * 109.46812 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46861 * 300.00061 * 1 2 3 31 31 H 1.09005 * 109.46750 * 60.00191 * 1 2 3 32 32 H 1.09002 * 109.47580 * 240.00137 * 2 1 3 33 33 H 1.09000 * 109.47164 * 119.99616 * 2 1 3 34 34 H 1.07996 * 119.84979 * 0.02562 * 5 4 3 35 35 H 1.08001 * 119.88573 * 180.02562 * 6 5 4 36 36 H 1.07997 * 120.03433 * 179.97438 * 7 6 5 37 37 H 1.08001 * 120.00317 * 38.54887 * 9 8 7 38 38 H 1.07998 * 120.00525 * 194.22771 * 10 9 8 39 39 H 1.07997 * 120.04151 * 0.02562 * 14 13 11 40 40 H 1.08000 * 119.95552 * 180.19480 * 15 14 13 41 41 H 0.96995 * 120.00085 * 180.02562 * 21 20 18 42 42 H 1.08001 * 119.96054 * 179.97438 * 26 16 15 43 43 H 1.08004 * 120.03136 * 179.97438 * 27 26 16 44 44 H 1.08007 * 120.10980 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1994 0.4233 0.0005 6 6 5.5715 0.5965 0.0005 7 6 6.1113 1.8658 0.0016 8 6 5.2688 2.9826 0.0021 9 6 5.8395 4.3386 0.0026 10 6 5.2584 5.3154 0.7317 11 6 4.2675 4.9751 1.7523 12 8 4.0518 3.8084 2.0264 13 6 3.5288 6.0462 2.4503 14 6 3.7795 7.3865 2.1410 15 6 3.0862 8.3823 2.7909 16 6 2.1434 8.0566 3.7614 17 8 1.4659 9.0400 4.4028 18 6 0.4768 8.6590 5.2352 19 1 0.3091 7.6101 5.4301 20 6 -0.3262 9.6144 5.8416 21 7 -0.1219 10.8914 5.6045 22 14 -1.6967 9.0863 6.9958 23 1 -1.1723 9.0061 8.3829 24 1 -2.8003 10.0784 6.9405 25 1 -2.2070 7.7547 6.5818 26 6 1.8949 6.7237 4.0752 27 6 2.5809 5.7227 3.4258 28 6 3.8819 2.8042 -0.0052 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7834 -0.5734 -0.0003 35 1 6.2227 -0.2651 0.0001 36 1 7.1832 1.9973 0.0020 37 1 6.7232 4.5528 -0.5802 38 1 5.5253 6.3480 0.5613 39 1 4.5137 7.6401 1.3907 40 1 3.2771 9.4177 2.5503 41 1 -0.6829 11.5593 6.0287 42 1 1.1628 6.4746 4.8292 43 1 2.3877 4.6886 3.6702 44 1 3.2252 3.6617 -0.0105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098008621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:07 Heat of formation + Delta-G solvation = -22.788111 kcal Electronic energy + Delta-G solvation = -27415.592357 eV Core-core repulsion = 23458.136484 eV Total energy + Delta-G solvation = -3957.455873 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.135 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -40.31916 -39.48573 -38.70400 -37.41265 -36.17394 -33.66120 -32.52409 -32.12303 -30.58933 -30.12776 -29.54715 -28.86613 -25.69824 -24.79187 -23.61853 -22.62829 -22.07361 -21.68648 -20.55996 -19.01849 -18.21901 -17.76511 -17.03117 -16.36229 -16.19533 -16.16046 -15.64105 -15.13013 -14.64102 -14.45153 -14.27047 -14.09414 -13.77383 -13.60772 -13.47700 -13.37986 -13.14381 -12.90340 -12.75994 -12.70401 -12.53948 -12.11895 -11.83287 -11.76693 -11.65063 -11.53192 -11.35895 -10.94781 -10.91633 -10.79386 -10.71417 -10.54069 -9.90816 -9.51623 -9.34459 -9.00892 -8.34704 -8.15162 -8.05547 -7.38569 -6.65550 -4.20780 0.50566 1.47332 1.60707 2.11991 2.19229 3.03204 3.05320 3.10446 3.15343 3.51349 3.82846 3.85301 4.51352 4.55457 4.64768 4.71191 4.72978 4.91651 4.92920 4.95262 5.05732 5.07528 5.18140 5.24985 5.33174 5.49284 5.52769 5.58327 5.59587 5.64680 5.75477 5.85731 5.97015 6.05881 6.13238 6.16491 6.30168 6.35258 6.43443 6.51422 6.58946 6.76021 6.78555 6.92744 7.02001 7.24918 7.26833 7.44458 7.65045 7.80451 8.13072 8.79397 9.45811 10.51004 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013047 B = 0.002522 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.577042 B =11098.270929 C =12843.279853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.315 6.315 4 C 0.119 3.881 5 C -0.200 4.200 6 C -0.096 4.096 7 C -0.138 4.138 8 C -0.031 4.031 9 C -0.047 4.047 10 C -0.209 4.209 11 C 0.417 3.583 12 O -0.467 6.467 13 C -0.267 4.267 14 C -0.029 4.029 15 C -0.205 4.205 16 C 0.175 3.825 17 O -0.160 6.160 18 C -0.393 4.393 19 H 0.098 0.902 20 C 0.043 3.957 21 N -0.851 5.851 22 Si 0.945 3.055 23 H -0.271 1.271 24 H -0.275 1.275 25 H -0.265 1.265 26 C -0.249 4.249 27 C -0.008 4.008 28 C -0.074 4.074 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.274 0.726 42 H 0.131 0.869 43 H 0.118 0.882 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.102 -17.544 -12.079 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.229 6.229 4 C 0.074 3.926 5 C -0.219 4.219 6 C -0.114 4.114 7 C -0.156 4.156 8 C -0.032 4.032 9 C -0.065 4.065 10 C -0.228 4.228 11 C 0.302 3.698 12 O -0.348 6.348 13 C -0.269 4.269 14 C -0.047 4.047 15 C -0.225 4.225 16 C 0.118 3.882 17 O -0.061 6.061 18 C -0.469 4.469 19 H 0.115 0.885 20 C -0.164 4.164 21 N -0.484 5.484 22 Si 0.768 3.232 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.189 1.189 26 C -0.268 4.268 27 C -0.027 4.027 28 C -0.093 4.093 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.084 0.916 42 H 0.149 0.851 43 H 0.136 0.864 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.715 -17.480 -11.848 22.482 hybrid contribution -0.542 -0.287 0.726 0.951 sum 7.173 -17.767 -11.121 22.154 Atomic orbital electron populations 1.21776 0.92825 1.02631 1.03761 1.22727 0.95863 0.82305 1.01005 1.86106 1.19090 1.28822 1.88898 1.18739 0.82231 0.93881 0.97775 1.21240 0.94447 0.97651 1.08567 1.20699 0.94142 0.97004 0.99590 1.21088 0.99144 0.91807 1.03607 1.18662 0.92183 0.93008 0.99304 1.22444 0.96687 0.91170 0.96212 1.23745 1.00539 1.00035 0.98432 1.20290 0.79800 0.88304 0.81453 1.90683 1.61301 1.21264 1.61546 1.19747 1.06773 0.93614 1.06795 1.20853 0.96157 0.91364 0.96374 1.20161 1.01902 0.99567 1.00842 1.19643 0.90726 0.88178 0.89639 1.83889 1.41493 1.30956 1.49731 1.21505 1.08247 0.94603 1.22531 0.88477 1.25403 0.98350 0.94658 0.97975 1.69998 1.37915 1.00084 1.40371 0.85647 0.79143 0.78866 0.79500 1.19603 1.20013 1.18888 1.21117 1.06821 0.92254 1.06655 1.20908 0.91566 0.98558 0.91627 1.20427 0.93958 0.94785 1.00137 0.90551 0.91309 0.91535 0.92384 0.92231 0.86000 0.86090 0.86043 0.84805 0.84494 0.86235 0.85979 0.91559 0.85111 0.86449 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.88 16 2 C 0.06 0.56 5.46 37.16 0.20 0.76 16 3 O -0.31 -4.46 10.13 -19.44 -0.20 -4.66 16 4 C 0.12 1.71 6.68 -39.28 -0.26 1.44 16 5 C -0.20 -2.40 9.04 -39.30 -0.36 -2.75 16 6 C -0.10 -1.06 10.02 -39.67 -0.40 -1.45 16 7 C -0.14 -1.59 9.79 -39.08 -0.38 -1.98 16 8 C -0.03 -0.42 4.65 -105.08 -0.49 -0.91 16 9 C -0.05 -0.53 9.83 -37.12 -0.36 -0.90 16 10 C -0.21 -2.66 9.33 -37.49 -0.35 -3.01 16 11 C 0.42 6.93 5.95 -32.52 -0.19 6.74 16 12 O -0.47 -8.73 12.17 5.12 0.06 -8.67 16 13 C -0.27 -4.88 5.88 -104.87 -0.62 -5.49 16 14 C -0.03 -0.50 9.44 -39.21 -0.37 -0.87 16 15 C -0.21 -4.13 9.97 -39.46 -0.39 -4.52 16 16 C 0.18 4.10 6.66 -38.89 -0.26 3.84 16 17 O -0.16 -4.38 9.74 0.82 0.01 -4.37 16 18 C -0.39 -10.57 9.48 30.93 0.29 -10.28 16 19 H 0.10 2.42 5.19 -52.49 -0.27 2.15 16 20 C 0.04 1.12 5.50 -17.51 -0.10 1.03 16 21 N -0.85 -23.89 13.67 55.48 0.76 -23.13 16 22 Si 0.94 19.73 29.55 -169.99 -5.02 14.70 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 26 C -0.25 -5.42 9.14 -39.46 -0.36 -5.78 16 27 C -0.01 -0.16 9.58 -39.21 -0.38 -0.53 16 28 C -0.07 -1.13 6.53 -38.94 -0.25 -1.38 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 33 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 34 H 0.12 1.16 6.28 -52.49 -0.33 0.83 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.14 1.38 6.34 -52.49 -0.33 1.05 16 39 H 0.12 1.57 6.23 -52.49 -0.33 1.24 16 40 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 41 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.13 2.82 5.63 -52.49 -0.30 2.52 16 43 H 0.12 2.22 7.64 -52.48 -0.40 1.82 16 44 H 0.12 2.03 6.72 -52.48 -0.35 1.68 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -31.77 374.13 -8.60 -40.36 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.20 Total: 7.05 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -4.64 Total: -26.92 kcal Atomic # 7 Polarization: -23.89 SS G_CDS: 0.76 Total: -23.13 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.13 Total: -17.70 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.77 -8.60 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098008621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.576 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds