Wall clock time and date at job start Tue Mar 31 2020 05:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42910 * 109.47038 * 2 1 4 4 C 1.35903 * 116.99803 * 179.97438 * 3 2 1 5 5 C 1.38921 * 119.97183 * 0.02562 * 4 3 2 6 6 C 1.38302 * 120.30235 * 179.97438 * 5 4 3 7 7 C 1.37925 * 120.23696 * 0.04824 * 6 5 4 8 8 C 1.39894 * 119.93220 * 359.97376 * 7 6 5 9 9 C 1.47116 * 120.14676 * 180.02562 * 8 7 6 10 10 C 1.35040 * 120.00162 * 218.54297 * 9 8 7 11 11 C 1.46267 * 119.99782 * 14.22970 * 10 9 8 12 12 O 1.21775 * 119.99924 * 6.42730 * 11 10 9 13 13 C 1.47648 * 120.00197 * 186.42430 * 11 10 9 14 14 C 1.39822 * 120.07449 * 359.71943 * 13 11 10 15 15 C 1.37641 * 119.91609 * 179.81055 * 14 13 11 16 16 C 1.39166 * 120.08086 * 0.45063 * 15 14 13 17 17 O 1.35557 * 119.92270 * 179.76617 * 16 15 14 18 18 C 1.34767 * 116.99938 * 173.70289 * 17 16 15 19 19 H 1.08000 * 120.00199 * 5.11266 * 18 17 16 20 20 C 1.38760 * 119.99933 * 185.11652 * 18 17 16 21 21 N 1.31479 * 119.99915 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99901 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47226 * 89.99829 * 22 20 18 24 24 H 1.48504 * 109.47099 * 209.99950 * 22 20 18 25 25 H 1.48499 * 109.47211 * 329.99813 * 22 20 18 26 26 C 1.39170 * 120.15486 * 359.78337 * 16 15 14 27 27 C 1.37635 * 120.07632 * 359.97438 * 26 16 15 28 28 C 1.38365 * 119.97118 * 179.72523 * 4 3 2 29 29 H 1.08997 * 109.46812 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46861 * 300.00061 * 1 2 3 31 31 H 1.09005 * 109.46750 * 60.00191 * 1 2 3 32 32 H 1.09002 * 109.47580 * 240.00137 * 2 1 3 33 33 H 1.09000 * 109.47164 * 119.99616 * 2 1 3 34 34 H 1.07996 * 119.84979 * 0.02562 * 5 4 3 35 35 H 1.08001 * 119.88573 * 180.02562 * 6 5 4 36 36 H 1.07997 * 120.03433 * 179.97438 * 7 6 5 37 37 H 1.08001 * 120.00317 * 38.54887 * 9 8 7 38 38 H 1.07998 * 120.00525 * 194.22771 * 10 9 8 39 39 H 1.07997 * 120.04151 * 0.02562 * 14 13 11 40 40 H 1.08000 * 119.95552 * 180.19480 * 15 14 13 41 41 H 0.96995 * 120.00085 * 180.02562 * 21 20 18 42 42 H 1.08001 * 119.96054 * 179.97438 * 26 16 15 43 43 H 1.08004 * 120.03136 * 179.97438 * 27 26 16 44 44 H 1.08007 * 120.10980 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1994 0.4233 0.0005 6 6 5.5715 0.5965 0.0005 7 6 6.1113 1.8658 0.0016 8 6 5.2688 2.9826 0.0021 9 6 5.8395 4.3386 0.0026 10 6 5.2584 5.3154 0.7317 11 6 4.2675 4.9751 1.7523 12 8 4.0518 3.8084 2.0264 13 6 3.5288 6.0462 2.4503 14 6 3.7795 7.3865 2.1410 15 6 3.0862 8.3823 2.7909 16 6 2.1434 8.0566 3.7614 17 8 1.4659 9.0400 4.4028 18 6 0.4768 8.6590 5.2352 19 1 0.3091 7.6101 5.4301 20 6 -0.3262 9.6144 5.8416 21 7 -0.1219 10.8914 5.6045 22 14 -1.6967 9.0863 6.9958 23 1 -1.1723 9.0061 8.3829 24 1 -2.8003 10.0784 6.9405 25 1 -2.2070 7.7547 6.5818 26 6 1.8949 6.7237 4.0752 27 6 2.5809 5.7227 3.4258 28 6 3.8819 2.8042 -0.0052 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7834 -0.5734 -0.0003 35 1 6.2227 -0.2651 0.0001 36 1 7.1832 1.9973 0.0020 37 1 6.7232 4.5528 -0.5802 38 1 5.5253 6.3480 0.5613 39 1 4.5137 7.6401 1.3907 40 1 3.2771 9.4177 2.5503 41 1 -0.6829 11.5593 6.0287 42 1 1.1628 6.4746 4.8292 43 1 2.3877 4.6886 3.6702 44 1 3.2252 3.6617 -0.0105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098008621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:57 Heat of formation + Delta-G solvation = -39.908136 kcal Electronic energy + Delta-G solvation = -27416.334737 eV Core-core repulsion = 23458.136484 eV Total energy + Delta-G solvation = -3958.198253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.135 amu Computer time = 10.08 seconds Orbital eigenvalues (eV) -41.42029 -40.91471 -40.14926 -38.49653 -37.76289 -34.65779 -34.42191 -32.90733 -32.06862 -31.58571 -30.54203 -30.05578 -27.57191 -25.94828 -24.62564 -23.79449 -23.52896 -22.81271 -21.80396 -20.34100 -19.70948 -19.21933 -18.46882 -17.59567 -17.14725 -17.03602 -16.72155 -16.59323 -16.29091 -15.78643 -15.73612 -15.62778 -15.30103 -14.74345 -14.60806 -14.45260 -14.32861 -14.27833 -14.02904 -13.67845 -13.58646 -13.39681 -13.27420 -13.03966 -12.89785 -12.63471 -12.51847 -12.50240 -12.32439 -12.15970 -11.77957 -11.65164 -11.30485 -10.88675 -10.84560 -10.62690 -9.95154 -9.20475 -9.09889 -9.01200 -8.56963 -6.23905 -0.58321 0.22018 0.53545 0.60236 1.00268 1.33364 1.41375 1.50396 2.11386 2.14453 2.32800 2.83774 2.91585 3.14061 3.27075 3.39798 3.76833 3.87992 3.97394 4.01082 4.03412 4.10998 4.16353 4.29018 4.33143 4.37285 4.42952 4.45475 4.55783 4.62155 4.68893 4.81376 4.88465 4.90869 5.02147 5.06329 5.11596 5.15894 5.20274 5.29503 5.41404 5.42571 5.50792 5.56081 5.59313 5.70517 5.91231 5.92032 6.02614 6.52649 6.80243 6.87179 7.61301 8.64739 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013047 B = 0.002522 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.577042 B =11098.270929 C =12843.279853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.345 6.345 4 C 0.094 3.906 5 C -0.203 4.203 6 C -0.095 4.095 7 C -0.137 4.137 8 C -0.053 4.053 9 C -0.017 4.017 10 C -0.231 4.231 11 C 0.417 3.583 12 O -0.488 6.488 13 C -0.256 4.256 14 C -0.009 4.009 15 C -0.211 4.211 16 C 0.145 3.855 17 O -0.211 6.211 18 C -0.421 4.421 19 H 0.102 0.898 20 C -0.013 4.013 21 N -0.908 5.908 22 Si 1.017 2.983 23 H -0.261 1.261 24 H -0.267 1.267 25 H -0.256 1.256 26 C -0.257 4.257 27 C -0.020 4.020 28 C -0.104 4.104 29 H 0.105 0.895 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.144 0.856 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.182 0.818 38 H 0.171 0.829 39 H 0.174 0.826 40 H 0.133 0.867 41 H 0.277 0.723 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.997 -20.368 -14.120 27.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.260 6.260 4 C 0.050 3.950 5 C -0.222 4.222 6 C -0.113 4.113 7 C -0.155 4.155 8 C -0.053 4.053 9 C -0.035 4.035 10 C -0.249 4.249 11 C 0.303 3.697 12 O -0.370 6.370 13 C -0.257 4.257 14 C -0.027 4.027 15 C -0.230 4.230 16 C 0.092 3.908 17 O -0.115 6.115 18 C -0.497 4.497 19 H 0.119 0.881 20 C -0.213 4.213 21 N -0.545 5.545 22 Si 0.836 3.164 23 H -0.186 1.186 24 H -0.192 1.192 25 H -0.180 1.180 26 C -0.276 4.276 27 C -0.039 4.039 28 C -0.123 4.123 29 H 0.123 0.877 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.161 0.839 35 H 0.173 0.827 36 H 0.172 0.828 37 H 0.199 0.801 38 H 0.188 0.812 39 H 0.191 0.809 40 H 0.151 0.849 41 H 0.086 0.914 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.643 -20.352 -13.918 26.855 hybrid contribution -1.140 0.152 1.036 1.548 sum 9.503 -20.200 -12.881 25.774 Atomic orbital electron populations 1.21819 0.91959 1.04202 1.02804 1.23010 0.96630 0.80886 1.02114 1.86072 1.19495 1.31326 1.89142 1.19041 0.82683 0.94592 0.98700 1.21560 0.94965 0.97932 1.07736 1.21182 0.94076 0.98232 0.97834 1.21514 1.00579 0.91359 1.02065 1.19027 0.91662 0.94906 0.99703 1.22943 0.96587 0.89516 0.94468 1.23694 1.00286 1.02180 0.98718 1.20652 0.79944 0.87156 0.81977 1.90698 1.62013 1.22063 1.62245 1.20304 1.05130 0.95273 1.05029 1.21344 0.95658 0.89774 0.95925 1.20527 1.01219 1.01138 1.00098 1.20206 0.91478 0.88391 0.90698 1.83876 1.43305 1.32350 1.52012 1.21886 1.09189 0.95169 1.23427 0.88057 1.26591 1.00679 0.94527 0.99500 1.70117 1.40011 1.01379 1.42954 0.84609 0.75783 0.78774 0.77234 1.18597 1.19151 1.17959 1.21142 1.07139 0.92389 1.06935 1.21048 0.92215 0.98270 0.92336 1.20445 0.94893 0.94437 1.02497 0.87682 0.92841 0.91888 0.90503 0.91684 0.83871 0.82731 0.82848 0.80124 0.81186 0.80853 0.84877 0.91358 0.86023 0.86117 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.05 0.91 5.46 71.98 0.39 1.30 16 3 O -0.35 -9.93 10.13 -92.46 -0.94 -10.87 16 4 C 0.09 2.67 6.68 22.46 0.15 2.82 16 5 C -0.20 -4.41 9.04 22.45 0.20 -4.21 16 6 C -0.10 -1.73 10.02 22.21 0.22 -1.51 16 7 C -0.14 -2.59 9.79 22.60 0.22 -2.37 16 8 C -0.05 -1.25 4.65 -20.16 -0.09 -1.34 16 9 C -0.02 -0.31 9.83 23.87 0.23 -0.08 16 10 C -0.23 -4.91 9.33 23.62 0.22 -4.69 16 11 C 0.42 13.08 5.95 26.85 0.16 13.24 16 12 O -0.49 -17.90 12.17 -4.59 -0.06 -17.95 16 13 C -0.26 -9.01 5.88 -20.03 -0.12 -9.13 16 14 C -0.01 -0.29 9.44 22.51 0.21 -0.08 16 15 C -0.21 -8.44 9.97 22.35 0.22 -8.22 16 16 C 0.15 7.12 6.66 22.72 0.15 7.28 16 17 O -0.21 -12.35 9.74 -19.98 -0.19 -12.55 16 18 C -0.42 -24.16 9.48 67.94 0.64 -23.52 16 19 H 0.10 5.42 5.19 -2.91 -0.02 5.41 16 20 C -0.01 -0.74 5.50 84.87 0.47 -0.28 16 21 N -0.91 -54.06 13.67 21.63 0.30 -53.77 16 22 Si 1.02 42.14 29.55 68.60 2.03 44.17 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 24 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 25 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 26 C -0.26 -11.73 9.14 22.35 0.20 -11.53 16 27 C -0.02 -0.82 9.58 22.51 0.22 -0.60 16 28 C -0.10 -3.08 6.53 22.69 0.15 -2.93 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.03 8.14 -2.38 -0.02 1.02 16 32 H 0.08 1.13 7.66 -2.39 -0.02 1.11 16 33 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 34 H 0.14 2.34 6.28 -2.91 -0.02 2.32 16 35 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.17 2.42 6.34 -2.91 -0.02 2.40 16 39 H 0.17 3.65 6.23 -2.91 -0.02 3.63 16 40 H 0.13 4.99 8.06 -2.91 -0.02 4.97 16 41 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.12 5.65 5.63 -2.91 -0.02 5.63 16 43 H 0.12 4.73 7.64 -2.91 -0.02 4.71 16 44 H 0.10 3.29 6.72 -2.91 -0.02 3.27 16 Total: -1.00 -77.04 374.13 6.77 -70.27 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 1.03 Total: 28.21 kcal Atomic # 6 Polarization: -52.11 SS G_CDS: 4.60 Total: -47.51 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.30 Total: -53.77 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -1.19 Total: -41.37 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -77.04 6.77 -70.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098008621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.365 kcal (2) G-P(sol) polarization free energy of solvation -77.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.08 seconds