Wall clock time and date at job start Tue Mar 31 2020 06:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.30999 * 120.00015 * 2 1 4 4 C 1.50704 * 119.99889 * 0.02562 * 3 2 1 5 5 O 1.45196 * 109.47016 * 135.00078 * 4 3 2 6 6 C 1.34715 * 116.99791 * 180.02562 * 5 4 3 7 7 O 1.21462 * 119.99987 * 359.97438 * 6 5 4 8 8 C 1.47727 * 119.99550 * 179.97438 * 6 5 4 9 9 C 1.39627 * 120.15141 * 359.73064 * 8 6 5 10 10 C 1.37947 * 119.84105 * 179.71949 * 9 8 6 11 11 C 1.38360 * 120.15483 * 0.55279 * 10 9 8 12 12 S 1.76203 * 119.84951 * 179.70042 * 11 10 9 13 13 O 1.42104 * 106.40277 * 23.55876 * 12 11 10 14 14 O 1.42101 * 106.40495 * 156.47949 * 12 11 10 15 15 N 1.65599 * 107.21679 * 270.01969 * 12 11 10 16 16 C 1.46506 * 120.00241 * 64.99831 * 15 12 11 17 17 C 1.50698 * 109.47235 * 164.99991 * 16 15 12 18 18 H 1.08006 * 119.99855 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00156 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99697 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00382 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47091 * 59.99547 * 21 19 17 23 23 H 1.48492 * 109.47384 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46932 * 299.99724 * 21 19 17 25 25 C 1.38368 * 120.30470 * 359.71940 * 11 10 9 26 26 C 1.37945 * 120.14585 * 359.97438 * 25 11 10 27 27 H 1.09007 * 109.47241 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47304 * 299.99823 * 1 2 3 29 29 H 1.08995 * 109.47499 * 60.00209 * 1 2 3 30 30 H 1.08005 * 120.00166 * 180.02562 * 2 1 3 31 31 H 1.08001 * 120.00186 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.46943 * 14.99833 * 4 3 2 33 33 H 1.08999 * 109.47285 * 254.99973 * 4 3 2 34 34 H 1.07992 * 120.07491 * 359.97438 * 9 8 6 35 35 H 1.08003 * 119.91997 * 180.24687 * 10 9 8 36 36 H 0.97002 * 120.00081 * 245.00323 * 15 12 11 37 37 H 1.08995 * 109.47126 * 285.00007 * 16 15 12 38 38 H 1.09001 * 109.46647 * 44.99797 * 16 15 12 39 39 H 0.96998 * 120.00114 * 180.02562 * 20 19 17 40 40 H 1.07997 * 119.92903 * 180.02562 * 25 11 10 41 41 H 1.07997 * 120.07465 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 0.0006 5 8 2.0051 3.3425 0.9685 6 6 1.4451 4.5613 1.0942 7 8 0.4851 4.8616 0.4135 8 6 1.9988 5.5325 2.0599 9 6 3.0989 5.1884 2.8479 10 6 3.6144 6.1023 3.7435 11 6 3.0368 7.3532 3.8701 12 16 3.6969 8.5115 5.0222 13 8 5.0508 8.1371 5.2366 14 8 3.3100 9.7994 4.5629 15 7 2.9124 8.2730 6.4610 16 6 3.0772 7.0099 7.1847 17 6 2.5818 7.1726 8.5986 18 1 2.1835 8.1219 8.9253 19 6 2.6369 6.1097 9.4750 20 7 3.1214 4.9537 9.0770 21 14 2.0221 6.3112 11.2274 22 1 0.5853 6.6860 11.2079 23 1 2.1904 5.0313 11.9613 24 1 2.8025 7.3768 11.9063 25 6 1.9429 7.6987 3.0963 26 6 1.4212 6.7968 2.1923 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 2.0470 -0.9353 -0.0004 31 1 3.2420 1.1345 -0.0004 32 1 0.3673 2.2578 0.2669 33 1 1.4567 2.8875 -0.9920 34 1 3.5477 4.2107 2.7535 35 1 4.4678 5.8390 4.3509 36 1 2.3437 8.9696 6.8246 37 1 2.5038 6.2282 6.6865 38 1 4.1317 6.7341 7.1986 39 1 3.1598 4.2058 9.6934 40 1 1.4971 8.6769 3.1998 41 1 0.5672 7.0675 1.5893 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098054096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:29 Heat of formation + Delta-G solvation = -120.046342 kcal Electronic energy + Delta-G solvation = -26092.870324 eV Core-core repulsion = 22065.381964 eV Total energy + Delta-G solvation = -4027.488360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.83794 -38.94544 -37.12826 -36.82438 -35.56271 -35.44017 -34.69904 -32.21215 -31.87693 -31.20374 -28.95844 -26.79887 -26.25585 -24.54711 -22.95887 -22.51210 -21.31679 -19.22847 -19.19581 -18.30264 -17.75093 -17.42468 -17.00548 -16.75214 -15.97888 -15.75064 -15.49333 -14.97322 -14.83824 -14.47534 -14.34627 -13.84732 -13.71140 -13.59046 -13.40497 -13.35073 -12.90255 -12.79389 -12.58188 -12.20453 -12.17164 -11.88089 -11.70640 -11.62016 -11.47173 -11.32591 -11.00054 -10.99520 -10.94863 -10.81725 -10.60120 -10.16962 -9.58562 -9.52080 -9.50596 -9.16389 -8.96336 -8.29972 -6.22082 -4.26956 0.14345 0.87152 1.20187 1.52247 2.17047 2.51324 3.24571 3.29372 3.30747 3.37363 3.66317 4.14950 4.25841 4.31215 4.47991 4.51249 4.61742 4.76283 4.83204 4.86740 4.87977 5.00330 5.15064 5.18524 5.21930 5.37044 5.46065 5.47643 5.57473 5.82311 5.85495 5.98879 6.05729 6.11282 6.13477 6.28190 6.35198 6.61728 7.21113 7.26801 7.44187 7.71799 7.75374 8.11445 8.76624 9.38292 10.88184 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010070 B = 0.002919 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.968226 B = 9589.864430 C =11561.470871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.136 4.136 3 C -0.168 4.168 4 C 0.093 3.907 5 O -0.345 6.345 6 C 0.511 3.489 7 O -0.502 6.502 8 C -0.083 4.083 9 C -0.082 4.082 10 C -0.025 4.025 11 C -0.637 4.637 12 S 2.689 3.311 13 O -0.956 6.956 14 O -0.975 6.975 15 N -1.100 6.100 16 C 0.245 3.755 17 C -0.531 4.531 18 H 0.066 0.934 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.032 4.032 26 C -0.080 4.080 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.153 0.847 36 H 0.412 0.588 37 H 0.022 0.978 38 H 0.040 0.960 39 H 0.267 0.733 40 H 0.150 0.850 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.290 -5.928 -17.578 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.186 4.186 4 C 0.020 3.980 5 O -0.262 6.262 6 C 0.356 3.644 7 O -0.391 6.391 8 C -0.084 4.084 9 C -0.101 4.101 10 C -0.044 4.044 11 C -0.721 4.721 12 S 2.775 3.225 13 O -0.946 6.946 14 O -0.965 6.965 15 N -0.863 5.863 16 C 0.122 3.878 17 C -0.571 4.571 18 H 0.084 0.916 19 C -0.141 4.141 20 N -0.528 5.528 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.051 4.051 26 C -0.099 4.099 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.165 0.835 35 H 0.171 0.829 36 H 0.247 0.753 37 H 0.040 0.960 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.167 0.833 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.779 -5.649 -18.014 19.082 hybrid contribution -1.120 -0.516 0.738 1.437 sum -3.899 -6.166 -17.276 18.753 Atomic orbital electron populations 1.21004 0.93161 1.02947 1.02384 1.22909 0.96473 0.97809 0.98188 1.22524 1.00601 0.92087 1.03411 1.22141 0.97057 0.87146 0.91636 1.86575 1.57258 1.24379 1.57983 1.21200 0.80923 0.81039 0.81260 1.90830 1.26181 1.78106 1.44008 1.19355 0.98152 0.93534 0.97377 1.21594 0.94293 1.00256 0.93944 1.21070 0.97721 0.90628 0.95028 1.31646 1.08505 1.14259 1.17722 1.02042 0.74356 0.72965 0.73119 1.93583 1.32226 1.83891 1.84909 1.93541 1.83968 1.37421 1.81570 1.55448 1.66272 1.28320 1.36255 1.19126 0.97840 0.78540 0.92326 1.21140 1.42798 0.98061 0.95098 0.91597 1.24963 0.95002 0.94965 0.99193 1.69918 1.44753 1.01879 1.36216 0.86465 0.79325 0.77519 0.83576 1.20085 1.21103 1.19992 1.20887 0.92493 0.99506 0.92211 1.21321 0.99336 0.91489 0.97751 0.91546 0.91023 0.91335 0.86138 0.85881 0.90051 0.90119 0.83507 0.82892 0.75302 0.95971 0.94185 0.92354 0.83250 0.83780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.70 36.01 0.31 -0.55 16 2 C -0.14 -0.93 10.26 -36.03 -0.37 -1.30 16 3 C -0.17 -1.34 9.90 -36.02 -0.36 -1.70 16 4 C 0.09 0.89 5.60 36.01 0.20 1.09 16 5 O -0.35 -4.10 9.46 -40.53 -0.38 -4.49 16 6 C 0.51 6.81 7.90 34.61 0.27 7.09 16 7 O -0.50 -7.44 16.14 -19.24 -0.31 -7.75 16 8 C -0.08 -1.12 5.87 -104.98 -0.62 -1.74 16 9 C -0.08 -1.09 9.62 -39.17 -0.38 -1.47 16 10 C -0.03 -0.38 9.50 -39.64 -0.38 -0.76 16 11 C -0.64 -9.88 5.95 -39.49 -0.24 -10.11 16 12 S 2.69 46.85 5.73 -107.50 -0.62 46.24 16 13 O -0.96 -19.28 16.74 -57.17 -0.96 -20.24 16 14 O -0.97 -17.67 17.27 -57.17 -0.99 -18.65 16 15 N -1.10 -20.98 5.99 -11.65 -0.07 -21.05 16 16 C 0.24 5.76 5.98 -5.19 -0.03 5.73 16 17 C -0.53 -13.79 9.27 -34.44 -0.32 -14.11 16 18 H 0.07 1.63 7.65 -52.48 -0.40 1.23 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -24.69 13.29 55.43 0.74 -23.95 16 21 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 25 C -0.03 -0.44 9.50 -39.64 -0.38 -0.82 16 26 C -0.08 -1.05 9.60 -39.17 -0.38 -1.42 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.50 7.48 -51.93 -0.39 0.11 16 29 H 0.07 0.39 8.02 -51.93 -0.42 -0.02 16 30 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.08 0.76 5.97 -51.93 -0.31 0.45 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.15 1.64 7.61 -52.49 -0.40 1.24 16 35 H 0.15 2.21 7.60 -52.48 -0.40 1.82 16 36 H 0.41 7.14 8.54 -34.47 -0.29 6.85 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.04 1.01 7.75 -51.93 -0.40 0.61 16 39 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.15 1.77 7.60 -52.49 -0.40 1.37 16 41 H 0.14 1.64 7.65 -52.49 -0.40 1.24 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -32.46 373.31 -9.79 -42.25 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.06 Total: 5.16 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.74 Total: -18.49 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.67 Total: -45.00 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -2.64 Total: -51.13 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 46.85 SS G_CDS: -0.62 Total: 46.24 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.46 -9.79 -42.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098054096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.799 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds