Wall clock time and date at job start Tue Mar 31 2020 05:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30537 * 1 3 3 Si 1.86802 * 119.99828 * 2 1 4 4 H 1.48502 * 109.47110 * 269.99928 * 3 2 1 5 5 H 1.48498 * 109.47413 * 29.99993 * 3 2 1 6 6 H 1.48505 * 109.46781 * 150.00274 * 3 2 1 7 7 C 1.40335 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00133 * 180.02562 * 7 2 1 9 9 C 1.41810 * 119.99514 * 359.97438 * 7 2 1 10 10 O 1.21792 * 120.00642 * 0.02562 * 9 7 2 11 11 C 1.47657 * 119.99763 * 180.02562 * 9 7 2 12 12 C 1.39872 * 120.15662 * 0.02562 * 11 9 7 13 13 C 1.37743 * 119.91885 * 179.71868 * 12 11 9 14 14 C 1.38639 * 120.24221 * 0.27600 * 13 12 11 15 15 I 2.09495 * 119.83825 * 180.02562 * 14 13 12 16 16 C 1.38545 * 120.32390 * 0.02562 * 14 13 12 17 17 F 1.35093 * 119.96571 * 180.02562 * 16 14 13 18 18 C 1.38422 * 120.07654 * 0.02562 * 16 14 13 19 19 F 1.35095 * 120.12434 * 179.97438 * 18 16 14 20 20 H 0.97002 * 119.99852 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.04380 * 359.97438 * 12 11 9 22 22 H 1.07994 * 119.87985 * 180.30393 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.4868 2.0465 -1.4001 5 1 1.4368 2.6527 0.7000 6 1 3.5369 1.4402 0.7000 7 6 2.0071 -1.2153 -0.0005 8 1 3.0871 -1.2153 -0.0001 9 6 1.2980 -2.4434 -0.0005 10 8 0.0800 -2.4434 -0.0005 11 6 2.0362 -3.7221 -0.0005 12 6 3.4349 -3.7260 0.0000 13 6 4.1187 -4.9217 0.0059 14 6 3.4256 -6.1224 0.0055 15 53 4.4782 -7.9337 0.0152 16 6 2.0401 -6.1304 -0.0014 17 9 1.3721 -7.3046 -0.0012 18 6 1.3396 -4.9365 -0.0084 19 9 -0.0113 -4.9431 -0.0156 20 1 -0.4850 0.8401 0.0004 21 1 3.9782 -2.7926 0.0000 22 1 5.1986 -4.9240 0.0112 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098210943.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:32 Heat of formation + Delta-G solvation = -91.830050 kcal Electronic energy + Delta-G solvation = -14922.359329 eV Core-core repulsion = 11744.869757 eV Total energy + Delta-G solvation = -3177.489572 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 337.936 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.06392 -47.96431 -38.74569 -36.47835 -32.92361 -32.00927 -30.12104 -28.42480 -26.64670 -22.97187 -22.35997 -20.23838 -17.69546 -16.89176 -16.31818 -15.95196 -15.93763 -15.32257 -14.43509 -14.41557 -13.88898 -13.54500 -13.03166 -12.50009 -12.32296 -11.88398 -11.78794 -11.56162 -11.15411 -10.94871 -10.52782 -10.45458 -10.11573 -9.93677 -9.16800 -8.48419 -8.35340 -7.72549 -6.52618 -5.14059 0.95160 1.02967 1.27701 2.93085 3.02368 3.05516 3.40622 3.83912 4.06018 4.29422 4.80162 4.92032 5.21577 5.38499 5.49072 5.71196 6.01694 6.22860 6.37485 6.62108 7.02261 7.06633 7.76855 8.51523 8.55745 10.06655 10.27947 Molecular weight = 337.94amu Principal moments of inertia in cm(-1) A = 0.033169 B = 0.004091 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.966617 B = 6842.349478 C = 7676.455346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.076 3.924 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.503 4.503 8 H 0.079 0.921 9 C 0.376 3.624 10 O -0.522 6.522 11 C -0.089 4.089 12 C -0.076 4.076 13 C -0.084 4.084 14 C -0.129 4.129 15 I -0.029 7.029 16 C 0.079 3.921 17 F -0.125 7.125 18 C 0.095 3.905 19 F -0.106 7.106 20 H 0.278 0.722 21 H 0.155 0.845 22 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.277 -11.951 0.029 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.149 4.149 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.533 4.533 8 H 0.097 0.903 9 C 0.271 3.729 10 O -0.411 6.411 11 C -0.092 4.092 12 C -0.096 4.096 13 C -0.105 4.105 14 C -0.270 4.270 15 I 0.120 6.880 16 C 0.056 3.944 17 F -0.103 7.103 18 C 0.073 3.927 19 F -0.084 7.084 20 H 0.090 0.910 21 H 0.172 0.828 22 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 12.143 -13.217 0.040 17.949 hybrid contribution -0.429 1.477 -0.012 1.538 sum 11.715 -11.740 0.027 16.585 Atomic orbital electron populations 1.69950 1.07661 1.28692 1.28978 1.26033 0.94751 1.01257 0.92867 0.86269 0.80383 0.80419 0.79382 1.19198 1.19972 1.18308 1.20905 0.95018 0.91147 1.46271 0.90286 1.18062 0.88767 0.84927 0.81176 1.90606 1.14397 1.87620 1.48431 1.22449 0.95038 0.96696 0.95034 1.21591 0.92923 0.98253 0.96807 1.20953 1.00198 0.90163 0.99151 1.24158 0.92587 0.97538 1.12766 1.96694 1.71437 1.21084 1.98802 1.17311 0.89216 0.80801 1.07082 1.91523 1.80327 1.44435 1.94032 1.17901 0.78429 0.91965 1.04405 1.91588 1.26684 1.96946 1.93147 0.91035 0.82781 0.84338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.83 11.73 55.57 0.65 -19.18 14 2 C 0.08 1.90 5.50 -17.31 -0.10 1.80 14 3 Si 0.91 17.82 29.56 -169.99 -5.03 12.80 14 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 14 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 14 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 14 7 C -0.50 -12.68 8.86 -37.43 -0.33 -13.02 14 8 H 0.08 1.72 6.02 -52.49 -0.32 1.41 14 9 C 0.38 10.08 6.91 -34.37 -0.24 9.84 14 10 O -0.52 -16.18 13.89 5.11 0.07 -16.11 14 11 C -0.09 -1.97 5.89 -104.78 -0.62 -2.58 14 12 C -0.08 -1.31 9.43 -39.15 -0.37 -1.68 14 13 C -0.08 -1.23 9.73 -39.61 -0.39 -1.62 14 14 C -0.13 -2.04 6.22 -39.32 -0.24 -2.29 14 15 I -0.03 -0.37 39.73 -73.02 -2.90 -3.27 14 16 C 0.08 1.46 7.26 -39.40 -0.29 1.18 14 17 F -0.12 -2.27 16.51 2.25 0.04 -2.24 14 18 C 0.10 2.07 7.30 -38.85 -0.28 1.78 14 19 F -0.11 -2.57 15.47 2.25 0.03 -2.53 14 20 H 0.28 6.80 8.29 -40.82 -0.34 6.46 14 21 H 0.15 2.39 6.20 -52.49 -0.33 2.07 14 22 H 0.14 1.58 8.06 -52.49 -0.42 1.15 14 LS Contribution 243.88 15.07 3.68 3.68 Total: -1.00 -29.90 243.88 -6.50 -36.40 By element: Atomic # 1 Polarization: -2.77 SS G_CDS: -0.20 Total: -2.97 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -2.85 Total: -6.57 kcal Atomic # 7 Polarization: -19.83 SS G_CDS: 0.65 Total: -19.18 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.07 Total: -16.11 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.07 Total: -4.77 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.80 kcal Atomic # 53 Polarization: -0.37 SS G_CDS: -2.90 Total: -3.27 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.90 -6.50 -36.40 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098210943.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.426 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds