Wall clock time and date at job start Tue Mar 31 2020 04:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99649 * 2 1 4 4 C 1.52995 * 109.46725 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46989 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47395 * 179.97438 * 5 4 3 7 7 C 1.37222 * 111.00272 * 180.02562 * 6 5 4 8 8 C 1.47364 * 134.21657 * 359.97438 * 7 6 5 9 9 O 1.21679 * 135.78217 * 359.97438 * 8 7 6 10 10 C 1.48602 * 88.43694 * 179.73235 * 8 7 6 11 11 O 1.21677 * 135.78453 * 180.26745 * 10 8 7 12 12 C 1.40560 * 134.21583 * 179.97438 * 7 6 5 13 13 N 1.37217 * 134.22371 * 0.02565 * 12 7 6 14 14 C 1.46955 * 110.99742 * 304.14427 * 13 12 7 15 15 C 1.53048 * 109.36600 * 176.81215 * 14 13 12 16 16 N 1.46958 * 109.36491 * 58.39622 * 15 14 13 17 17 C 1.46906 * 110.99614 * 176.81131 * 16 15 14 18 18 C 1.50696 * 109.47265 * 58.99775 * 17 16 15 19 19 H 1.08007 * 119.99867 * 4.98669 * 18 17 16 20 20 C 1.37870 * 120.00268 * 184.98409 * 18 17 16 21 21 N 1.31519 * 120.00338 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00175 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47013 * 89.99552 * 22 20 18 24 24 H 1.48496 * 109.47495 * 209.99969 * 22 20 18 25 25 H 1.48504 * 109.47014 * 330.00176 * 22 20 18 26 26 C 1.46951 * 110.88028 * 300.68181 * 16 15 14 27 27 C 1.46956 * 111.00223 * 180.34531 * 13 12 7 28 28 H 1.08997 * 109.47094 * 60.00651 * 1 2 3 29 29 H 1.09005 * 109.47137 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47377 * 299.99958 * 1 2 3 31 31 H 1.09002 * 109.46984 * 59.99676 * 3 2 1 32 32 H 1.08991 * 109.46883 * 299.99518 * 3 2 1 33 33 H 1.09002 * 109.47375 * 60.00256 * 4 3 2 34 34 H 1.08996 * 109.47757 * 299.99752 * 4 3 2 35 35 H 1.09002 * 109.47157 * 60.00622 * 5 4 3 36 36 H 1.08993 * 109.47503 * 300.00127 * 5 4 3 37 37 H 1.00898 * 110.99931 * 56.04740 * 6 5 4 38 38 H 1.09000 * 109.48942 * 296.77760 * 14 13 12 39 39 H 1.08999 * 109.49170 * 56.83981 * 14 13 12 40 40 H 1.09000 * 109.48667 * 298.42853 * 15 14 13 41 41 H 1.08997 * 109.49183 * 178.36938 * 15 14 13 42 42 H 1.09004 * 109.46683 * 178.99132 * 17 16 15 43 43 H 1.08998 * 109.47656 * 298.99088 * 17 16 15 44 44 H 0.96994 * 120.00142 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.49001 * 299.34680 * 26 16 15 46 46 H 1.09007 * 109.48452 * 179.28441 * 26 16 15 47 47 H 1.09002 * 109.48374 * 303.15030 * 27 13 12 48 48 H 1.08993 * 109.49015 * 63.19761 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1576 2.5825 0.0000 6 7 5.6221 2.4666 0.0012 7 6 6.2134 3.7048 0.0013 8 6 5.7032 5.0873 -0.0001 9 8 4.6052 5.6117 -0.0021 10 6 7.1109 5.5636 0.0083 11 8 7.6650 6.6468 0.0165 12 6 7.5449 4.1552 0.0026 13 7 8.7666 3.5304 0.0040 14 6 8.8835 2.6052 1.1398 15 6 10.2245 1.8717 1.0608 16 7 11.3181 2.8533 1.0701 17 6 12.6259 2.1842 1.0717 18 6 12.7445 1.3101 -0.1502 19 1 11.9650 1.3182 -0.8977 20 6 13.8482 0.5002 -0.3139 21 7 13.9514 -0.2630 -1.3800 22 14 15.1969 0.4867 0.9784 23 1 14.8957 -0.5509 1.9974 24 1 16.4988 0.1826 0.3322 25 1 15.2682 1.8176 1.6334 26 6 11.2011 3.7784 -0.0657 27 6 9.8602 4.5120 0.0134 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8574 0.6437 -0.8891 34 1 3.8567 0.6440 0.8908 35 1 3.8358 3.1239 0.8896 36 1 3.8364 3.1229 -0.8904 37 1 5.9416 1.9130 -0.7794 38 1 8.8303 3.1661 2.0728 39 1 8.0700 1.8806 1.1039 40 1 10.2665 1.2889 0.1406 41 1 10.3259 1.2061 1.9180 42 1 13.4174 2.9336 1.0604 43 1 12.7192 1.5707 1.9677 44 1 14.7281 -0.8326 -1.4954 45 1 11.2544 3.2174 -0.9987 46 1 12.0147 4.5030 -0.0297 47 1 9.7587 5.1775 -0.8439 48 1 9.8178 5.0948 0.9334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101695852.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:00 Heat of formation + Delta-G solvation = -36.667340 kcal Electronic energy + Delta-G solvation = -28963.799485 eV Core-core repulsion = 24828.444257 eV Total energy + Delta-G solvation = -4135.355228 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.33818 -39.12519 -38.56043 -38.12294 -37.29683 -35.89495 -34.16127 -32.38024 -31.84525 -30.72933 -28.64525 -27.38283 -25.57162 -25.20302 -23.50489 -22.70648 -22.23533 -21.84828 -21.37313 -19.49564 -18.32404 -17.56773 -17.36831 -16.90557 -16.87467 -16.60966 -16.22490 -15.69840 -15.55269 -15.26025 -14.93243 -14.84027 -14.54647 -14.44959 -14.33050 -14.01535 -13.58032 -13.53139 -13.09016 -12.97483 -12.51784 -12.40812 -12.29896 -12.16763 -12.05105 -11.67562 -11.49674 -11.42904 -11.28453 -11.01067 -10.89445 -10.73076 -10.50556 -10.31726 -10.20679 -10.10087 -9.99415 -9.59476 -9.16206 -8.66756 -7.70714 -7.39070 -6.17772 -4.18746 0.25812 0.62141 2.73542 2.88971 3.12814 3.22371 3.31000 3.33900 3.48575 3.53081 3.75664 4.32011 4.32899 4.44358 4.60063 4.68832 4.72035 4.79764 4.89287 4.94075 4.98693 5.04062 5.13184 5.14286 5.22068 5.27002 5.27412 5.46580 5.60375 5.62406 5.65860 5.69539 5.82470 5.98846 6.20093 6.32141 6.45358 6.52528 6.59329 6.61932 6.68220 6.71710 6.83306 6.85346 6.96207 7.30522 7.43824 7.86982 7.89166 8.35117 8.83888 9.44459 10.94806 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011716 B = 0.002479 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.316506 B =11292.387806 C =13256.437721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.063 3.937 4 C -0.121 4.121 5 C 0.058 3.942 6 N -0.572 5.572 7 C 0.009 3.991 8 C 0.342 3.658 9 O -0.413 6.413 10 C 0.339 3.661 11 O -0.399 6.399 12 C 0.049 3.951 13 N -0.437 5.437 14 C 0.060 3.940 15 C 0.058 3.942 16 N -0.537 5.537 17 C 0.155 3.845 18 C -0.554 4.554 19 H 0.077 0.923 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.879 3.121 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.264 1.264 26 C 0.059 3.941 27 C 0.054 3.946 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.372 0.628 38 H 0.056 0.944 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.030 0.970 43 H 0.028 0.972 44 H 0.264 0.736 45 H 0.058 0.942 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.470 4.519 3.150 23.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.014 4.014 4 C -0.159 4.159 5 C -0.070 4.070 6 N -0.200 5.200 7 C -0.104 4.104 8 C 0.217 3.783 9 O -0.287 6.287 10 C 0.212 3.788 11 O -0.270 6.270 12 C -0.066 4.066 13 N -0.148 5.148 14 C -0.064 4.064 15 C -0.070 4.070 16 N -0.261 5.261 17 C 0.029 3.971 18 C -0.593 4.593 19 H 0.095 0.905 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.706 3.294 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.189 1.189 26 C -0.069 4.069 27 C -0.071 4.071 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.203 0.797 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.048 0.952 43 H 0.046 0.954 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.396 4.870 3.732 23.222 hybrid contribution 0.597 -0.111 -0.476 0.772 sum -21.799 4.759 3.256 22.549 Atomic orbital electron populations 1.22753 0.80780 1.02901 1.00054 1.87876 1.19892 1.27806 1.95454 1.22414 0.93562 0.84853 1.00585 1.21477 0.93229 0.96368 1.04787 1.22066 0.84136 0.97565 1.03187 1.56078 1.07748 1.10047 1.46129 1.23343 0.92811 0.91017 1.03229 1.24811 0.90555 0.88948 0.74002 1.90710 1.26365 1.72445 1.39149 1.24906 0.91243 0.88461 0.74202 1.90734 1.70897 1.27833 1.37577 1.23937 0.90401 0.93961 0.98257 1.57830 0.99209 1.17941 1.39831 1.22606 1.00264 0.94625 0.88897 1.22046 0.88062 0.94070 1.02852 1.62667 1.04298 1.18462 1.40706 1.20167 0.86239 0.93914 0.96821 1.21649 1.07228 1.23914 1.06484 0.90548 1.24970 0.97983 0.94715 0.95331 1.69921 1.29798 1.26116 1.27579 0.86799 0.81551 0.79109 0.81940 1.20168 1.21298 1.18889 1.22021 0.93840 0.96007 0.95077 1.22545 0.89669 0.92572 1.02334 0.94021 0.89500 0.93973 0.92919 0.93097 0.90474 0.89550 0.89342 0.92673 0.79660 0.92595 0.89100 0.92026 0.90214 0.95243 0.95418 0.92600 0.92357 0.90215 0.89694 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.42 10.70 -35.23 -0.38 -3.80 16 3 C 0.06 0.44 5.94 37.16 0.22 0.66 16 4 C -0.12 -0.82 5.84 -26.73 -0.16 -0.98 16 5 C 0.06 0.42 4.83 -3.82 -0.02 0.40 16 6 N -0.57 -4.83 6.54 -57.51 -0.38 -5.20 16 7 C 0.01 0.09 7.45 -82.88 -0.62 -0.52 16 8 C 0.34 4.00 8.63 -33.60 -0.29 3.71 16 9 O -0.41 -5.53 17.73 5.21 0.09 -5.43 16 10 C 0.34 4.34 8.58 -33.60 -0.29 4.05 16 11 O -0.40 -6.03 17.66 5.21 0.09 -5.94 16 12 C 0.05 0.58 6.47 -82.87 -0.54 0.05 16 13 N -0.44 -6.00 4.74 -169.96 -0.81 -6.80 16 14 C 0.06 0.81 5.51 -3.77 -0.02 0.79 16 15 C 0.06 1.00 5.24 -3.77 -0.02 0.98 16 16 N -0.54 -10.19 4.92 -235.91 -1.16 -11.35 16 17 C 0.16 3.47 4.21 -4.97 -0.02 3.45 16 18 C -0.55 -14.51 8.21 -34.44 -0.28 -14.80 16 19 H 0.08 2.18 6.07 -52.48 -0.32 1.86 16 20 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 21 N -0.90 -26.34 13.96 55.43 0.77 -25.57 16 22 Si 0.88 20.60 27.37 -169.99 -4.65 15.94 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.26 -5.96 6.69 56.52 0.38 -5.58 16 26 C 0.06 1.04 5.32 -3.77 -0.02 1.02 16 27 C 0.05 0.79 4.81 -3.77 -0.02 0.77 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.37 2.75 8.74 -39.29 -0.34 2.41 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.09 7.99 -51.93 -0.41 0.67 16 40 H 0.06 1.23 6.62 -51.93 -0.34 0.88 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.03 0.67 7.52 -51.93 -0.39 0.28 16 43 H 0.03 0.62 7.30 -51.93 -0.38 0.24 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.06 1.17 6.78 -51.93 -0.35 0.82 16 46 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 47 H 0.08 1.17 7.99 -51.93 -0.42 0.75 16 48 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 395.18 15.07 5.96 5.96 Total: -1.00 -30.79 395.18 -9.12 -39.92 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.61 Total: -0.51 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.05 Total: 2.80 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -1.57 Total: -48.93 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.19 Total: -15.17 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.65 Total: 15.94 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.79 -9.12 -39.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101695852.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.248 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds