Wall clock time and date at job start Tue Mar 31 2020 04:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99649 * 2 1 4 4 C 1.52995 * 109.46725 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46989 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47395 * 179.97438 * 5 4 3 7 7 C 1.37222 * 111.00272 * 180.02562 * 6 5 4 8 8 C 1.47364 * 134.21657 * 359.97438 * 7 6 5 9 9 O 1.21679 * 135.78217 * 359.97438 * 8 7 6 10 10 C 1.48602 * 88.43694 * 179.73235 * 8 7 6 11 11 O 1.21677 * 135.78453 * 180.26745 * 10 8 7 12 12 C 1.40560 * 134.21583 * 179.97438 * 7 6 5 13 13 N 1.37217 * 134.22371 * 0.02565 * 12 7 6 14 14 C 1.46955 * 110.99742 * 304.14427 * 13 12 7 15 15 C 1.53048 * 109.36600 * 176.81215 * 14 13 12 16 16 N 1.46958 * 109.36491 * 58.39622 * 15 14 13 17 17 C 1.46906 * 110.99614 * 176.81131 * 16 15 14 18 18 C 1.50696 * 109.47265 * 58.99775 * 17 16 15 19 19 H 1.08007 * 119.99867 * 4.98669 * 18 17 16 20 20 C 1.37870 * 120.00268 * 184.98409 * 18 17 16 21 21 N 1.31519 * 120.00338 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00175 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47013 * 89.99552 * 22 20 18 24 24 H 1.48496 * 109.47495 * 209.99969 * 22 20 18 25 25 H 1.48504 * 109.47014 * 330.00176 * 22 20 18 26 26 C 1.46951 * 110.88028 * 300.68181 * 16 15 14 27 27 C 1.46956 * 111.00223 * 180.34531 * 13 12 7 28 28 H 1.08997 * 109.47094 * 60.00651 * 1 2 3 29 29 H 1.09005 * 109.47137 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47377 * 299.99958 * 1 2 3 31 31 H 1.09002 * 109.46984 * 59.99676 * 3 2 1 32 32 H 1.08991 * 109.46883 * 299.99518 * 3 2 1 33 33 H 1.09002 * 109.47375 * 60.00256 * 4 3 2 34 34 H 1.08996 * 109.47757 * 299.99752 * 4 3 2 35 35 H 1.09002 * 109.47157 * 60.00622 * 5 4 3 36 36 H 1.08993 * 109.47503 * 300.00127 * 5 4 3 37 37 H 1.00898 * 110.99931 * 56.04740 * 6 5 4 38 38 H 1.09000 * 109.48942 * 296.77760 * 14 13 12 39 39 H 1.08999 * 109.49170 * 56.83981 * 14 13 12 40 40 H 1.09000 * 109.48667 * 298.42853 * 15 14 13 41 41 H 1.08997 * 109.49183 * 178.36938 * 15 14 13 42 42 H 1.09004 * 109.46683 * 178.99132 * 17 16 15 43 43 H 1.08998 * 109.47656 * 298.99088 * 17 16 15 44 44 H 0.96994 * 120.00142 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.49001 * 299.34680 * 26 16 15 46 46 H 1.09007 * 109.48452 * 179.28441 * 26 16 15 47 47 H 1.09002 * 109.48374 * 303.15030 * 27 13 12 48 48 H 1.08993 * 109.49015 * 63.19761 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1576 2.5825 0.0000 6 7 5.6221 2.4666 0.0012 7 6 6.2134 3.7048 0.0013 8 6 5.7032 5.0873 -0.0001 9 8 4.6052 5.6117 -0.0021 10 6 7.1109 5.5636 0.0083 11 8 7.6650 6.6468 0.0165 12 6 7.5449 4.1552 0.0026 13 7 8.7666 3.5304 0.0040 14 6 8.8835 2.6052 1.1398 15 6 10.2245 1.8717 1.0608 16 7 11.3181 2.8533 1.0701 17 6 12.6259 2.1842 1.0717 18 6 12.7445 1.3101 -0.1502 19 1 11.9650 1.3182 -0.8977 20 6 13.8482 0.5002 -0.3139 21 7 13.9514 -0.2630 -1.3800 22 14 15.1969 0.4867 0.9784 23 1 14.8957 -0.5509 1.9974 24 1 16.4988 0.1826 0.3322 25 1 15.2682 1.8176 1.6334 26 6 11.2011 3.7784 -0.0657 27 6 9.8602 4.5120 0.0134 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8574 0.6437 -0.8891 34 1 3.8567 0.6440 0.8908 35 1 3.8358 3.1239 0.8896 36 1 3.8364 3.1229 -0.8904 37 1 5.9416 1.9130 -0.7794 38 1 8.8303 3.1661 2.0728 39 1 8.0700 1.8806 1.1039 40 1 10.2665 1.2889 0.1406 41 1 10.3259 1.2061 1.9180 42 1 13.4174 2.9336 1.0604 43 1 12.7192 1.5707 1.9677 44 1 14.7281 -0.8326 -1.4954 45 1 11.2544 3.2174 -0.9987 46 1 12.0147 4.5030 -0.0297 47 1 9.7587 5.1775 -0.8439 48 1 9.8178 5.0948 0.9334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101695852.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:55 Heat of formation + Delta-G solvation = -60.856567 kcal Electronic energy + Delta-G solvation = -28964.848409 eV Core-core repulsion = 24828.444257 eV Total energy + Delta-G solvation = -4136.404151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 3.82 seconds Orbital eigenvalues (eV) -42.34747 -40.34431 -39.33230 -38.97196 -38.24464 -37.07737 -35.32006 -34.26327 -32.59393 -31.99953 -30.30997 -27.89654 -27.15376 -25.86977 -24.72375 -23.95315 -23.19703 -22.98200 -22.37570 -20.94244 -19.36522 -18.86338 -18.53228 -18.20974 -17.64159 -17.26115 -17.04705 -16.78459 -16.55438 -16.28298 -16.02816 -15.95586 -15.93966 -15.72568 -15.42799 -15.10438 -14.68015 -14.62648 -14.45821 -14.29214 -13.78270 -13.68204 -13.27247 -13.05186 -13.00954 -12.86663 -12.62553 -12.47469 -12.27929 -12.23367 -12.13650 -12.00814 -11.92154 -11.78615 -11.68891 -11.51357 -11.17893 -10.76409 -10.61915 -10.14920 -9.05484 -8.64901 -8.28958 -6.33987 -0.69900 -0.36596 1.38002 1.40230 1.51166 1.78267 1.93770 2.35824 2.35902 2.47512 2.64715 3.02363 3.06437 3.23953 3.36912 3.70617 3.88974 3.97740 4.04746 4.10321 4.18258 4.27038 4.34738 4.37129 4.42095 4.48739 4.52972 4.55844 4.58365 4.65098 4.74622 4.87250 4.93138 4.98430 5.05798 5.07024 5.08992 5.13434 5.17655 5.36832 5.50719 5.55127 5.62730 5.76513 5.82675 6.08509 6.22779 6.30636 6.33750 6.34364 6.72996 7.32915 8.86837 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011716 B = 0.002479 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.316506 B =11292.387806 C =13256.437721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.060 3.940 4 C -0.113 4.113 5 C 0.060 3.940 6 N -0.568 5.568 7 C 0.055 3.945 8 C 0.352 3.648 9 O -0.425 6.425 10 C 0.339 3.661 11 O -0.430 6.430 12 C 0.032 3.968 13 N -0.447 5.447 14 C 0.071 3.929 15 C 0.060 3.940 16 N -0.532 5.532 17 C 0.160 3.840 18 C -0.546 4.546 19 H 0.038 0.962 20 C 0.011 3.989 21 N -0.947 5.947 22 Si 0.947 3.053 23 H -0.267 1.267 24 H -0.289 1.289 25 H -0.246 1.246 26 C 0.062 3.938 27 C 0.067 3.933 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.385 0.615 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.027 0.973 41 H 0.085 0.915 42 H 0.030 0.970 43 H 0.035 0.965 44 H 0.265 0.735 45 H 0.025 0.975 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.922 4.888 4.732 24.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.017 4.017 4 C -0.151 4.151 5 C -0.066 4.066 6 N -0.196 5.196 7 C -0.060 4.060 8 C 0.227 3.773 9 O -0.299 6.299 10 C 0.214 3.786 11 O -0.305 6.305 12 C -0.082 4.082 13 N -0.159 5.159 14 C -0.053 4.053 15 C -0.069 4.069 16 N -0.256 5.256 17 C 0.033 3.967 18 C -0.585 4.585 19 H 0.057 0.943 20 C -0.187 4.187 21 N -0.587 5.587 22 Si 0.771 3.229 23 H -0.192 1.192 24 H -0.215 1.215 25 H -0.170 1.170 26 C -0.067 4.067 27 C -0.059 4.059 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.218 0.782 38 H 0.084 0.916 39 H 0.129 0.871 40 H 0.045 0.955 41 H 0.103 0.897 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.043 0.957 46 H 0.101 0.899 47 H 0.110 0.890 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.905 5.229 5.315 25.041 hybrid contribution 0.833 -0.296 -1.021 1.351 sum -23.072 4.933 4.294 23.981 Atomic orbital electron populations 1.22914 0.79497 1.03754 1.00888 1.87831 1.21455 1.28831 1.95639 1.22487 0.93384 0.84481 1.01351 1.21391 0.93383 0.95784 1.04577 1.22102 0.82911 0.98069 1.03557 1.56049 1.08735 1.08869 1.45972 1.23206 0.91822 0.91036 0.99904 1.24727 0.89892 0.89232 0.73431 1.90719 1.26739 1.72760 1.39706 1.25059 0.91651 0.88296 0.73571 1.90724 1.71425 1.28772 1.39532 1.23665 0.90182 0.93639 1.00683 1.57830 0.99612 1.17988 1.40497 1.22486 0.98393 0.94907 0.89493 1.22046 0.89517 0.94023 1.01291 1.62683 1.03368 1.18471 1.41036 1.20038 0.88287 0.93397 0.94981 1.21865 1.05842 1.23904 1.06864 0.94335 1.25894 1.00787 0.94484 0.97544 1.70076 1.30889 1.27680 1.30042 0.85711 0.77932 0.80099 0.79171 1.19165 1.21498 1.16956 1.21994 0.96151 0.95545 0.92968 1.22340 0.88310 0.92308 1.02933 0.93159 0.88768 0.93146 0.92259 0.92234 0.90266 0.90188 0.89377 0.91894 0.78193 0.91550 0.87140 0.95484 0.89678 0.95144 0.94737 0.92624 0.95694 0.89876 0.88974 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -6.68 10.70 -148.98 -1.59 -8.27 16 3 C 0.06 0.71 5.94 71.98 0.43 1.14 16 4 C -0.11 -1.29 5.84 30.59 0.18 -1.11 16 5 C 0.06 0.71 4.83 86.30 0.42 1.13 16 6 N -0.57 -7.94 6.54 -335.85 -2.20 -10.13 16 7 C 0.05 0.98 7.45 39.97 0.30 1.28 16 8 C 0.35 7.49 8.63 26.15 0.23 7.72 16 9 O -0.42 -10.47 17.73 -4.28 -0.08 -10.55 16 10 C 0.34 8.22 8.58 26.15 0.22 8.44 16 11 O -0.43 -12.74 17.66 -4.28 -0.08 -12.82 16 12 C 0.03 0.70 6.47 39.98 0.26 0.96 16 13 N -0.45 -11.77 4.74 -691.62 -3.28 -15.05 16 14 C 0.07 1.81 5.51 86.31 0.48 2.28 16 15 C 0.06 2.04 5.24 86.31 0.45 2.49 16 16 N -0.53 -20.01 4.92 -900.28 -4.43 -24.44 16 17 C 0.16 7.12 4.21 85.55 0.36 7.48 16 18 C -0.55 -29.33 8.21 25.60 0.21 -29.12 16 19 H 0.04 2.32 6.07 -2.91 -0.02 2.30 16 20 C 0.01 0.61 5.47 84.65 0.46 1.08 16 21 N -0.95 -57.35 13.96 21.45 0.30 -57.05 16 22 Si 0.95 42.34 27.37 68.60 1.88 44.21 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.25 -10.19 6.69 99.48 0.67 -9.53 16 26 C 0.06 2.20 5.32 86.31 0.46 2.66 16 27 C 0.07 1.91 4.81 86.31 0.42 2.32 16 28 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.38 4.55 8.74 -89.70 -0.78 3.77 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.11 2.37 7.99 -2.39 -0.02 2.35 16 40 H 0.03 1.11 6.62 -2.39 -0.02 1.09 16 41 H 0.08 2.76 8.14 -2.39 -0.02 2.75 16 42 H 0.03 1.35 7.52 -2.39 -0.02 1.34 16 43 H 0.03 1.50 7.30 -2.39 -0.02 1.48 16 44 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 45 H 0.02 1.05 6.78 -2.39 -0.02 1.03 16 46 H 0.08 2.83 8.12 -2.38 -0.02 2.81 16 47 H 0.09 2.50 7.99 -2.39 -0.02 2.48 16 48 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -67.72 395.18 -3.21 -70.94 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.15 Total: 12.89 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 6.11 Total: 10.25 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -9.61 Total: -106.66 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -1.75 Total: -31.63 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.88 Total: 44.21 kcal Total: -67.72 -3.21 -70.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101695852.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.079 kcal (2) G-P(sol) polarization free energy of solvation -67.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.82 seconds