Wall clock time and date at job start Tue Mar 31 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86791 * 120.00079 * 2 1 4 4 H 1.48502 * 109.47490 * 270.00123 * 3 2 1 5 5 H 1.48501 * 109.47167 * 30.00347 * 3 2 1 6 6 H 1.48500 * 109.47376 * 150.00118 * 3 2 1 7 7 C 1.37878 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00066 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99660 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46729 * 179.97438 * 9 7 2 11 11 C 1.35604 * 124.78353 * 264.99855 * 10 9 7 12 12 C 1.36663 * 109.69969 * 180.02562 * 11 10 9 13 13 C 1.46383 * 126.78579 * 179.97438 * 12 11 10 14 14 C 1.35446 * 119.99806 * 312.57765 * 13 12 11 15 15 C 1.41497 * 120.00267 * 348.83109 * 14 13 12 16 16 O 1.21778 * 119.99841 * 353.03871 * 15 14 13 17 17 N 1.34779 * 119.99909 * 173.04781 * 15 14 13 18 18 C 1.46924 * 120.63375 * 354.29040 * 17 15 14 19 19 C 1.53628 * 108.54113 * 126.36988 * 18 17 15 20 20 C 1.53036 * 109.24127 * 54.85775 * 19 18 17 21 21 C 1.53039 * 109.54049 * 298.50790 * 20 19 18 22 22 C 1.46927 * 120.62647 * 174.56977 * 17 15 14 23 23 C 1.47514 * 106.42710 * 359.97438 * 12 11 10 24 24 C 1.39254 * 133.97041 * 180.32529 * 23 12 11 25 25 C 1.37765 * 119.67845 * 180.16369 * 24 23 12 26 26 C 1.38746 * 120.29976 * 359.50016 * 25 24 23 27 27 C 1.37782 * 120.62235 * 0.23055 * 26 25 24 28 28 C 1.37991 * 124.77818 * 85.00502 * 10 9 7 29 29 H 0.97000 * 119.99935 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47491 * 60.00601 * 9 7 2 31 31 H 1.08994 * 109.47498 * 299.99607 * 9 7 2 32 32 H 1.08003 * 125.15517 * 0.02562 * 11 10 9 33 33 H 1.07997 * 120.00131 * 132.58470 * 13 12 11 34 34 H 1.08000 * 120.00117 * 168.82379 * 14 13 12 35 35 H 1.08994 * 109.58915 * 246.20359 * 18 17 15 36 36 H 1.09005 * 109.58487 * 6.63178 * 18 17 15 37 37 H 1.09003 * 109.63204 * 294.86168 * 19 18 17 38 38 H 1.09001 * 109.42635 * 174.72974 * 19 18 17 39 39 H 1.09008 * 109.45605 * 178.48766 * 20 19 18 40 40 H 1.08994 * 109.46014 * 58.53442 * 20 19 18 41 41 H 1.09002 * 109.49920 * 301.41776 * 21 20 19 42 42 H 1.08997 * 109.50063 * 181.32128 * 21 20 19 43 43 H 1.08996 * 109.59129 * 353.37643 * 22 17 15 44 44 H 1.09007 * 109.58426 * 113.80152 * 22 17 15 45 45 H 1.08001 * 120.16102 * 359.92036 * 24 23 12 46 46 H 1.08005 * 119.85530 * 179.77900 * 25 24 23 47 47 H 1.07998 * 119.69112 * 180.25543 * 26 25 24 48 48 H 1.08008 * 120.02954 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2029 -3.6127 -0.0027 11 6 2.6319 -4.2628 -1.1128 12 6 3.5125 -5.2463 -0.7593 13 6 4.2003 -6.1723 -1.6605 14 6 3.5045 -6.8219 -2.6241 15 6 2.0898 -6.7942 -2.6157 16 8 1.4961 -6.2961 -1.6764 17 7 1.3995 -7.3192 -3.6474 18 6 2.0980 -7.8106 -4.8429 19 6 1.6560 -9.2581 -5.1065 20 6 0.1297 -9.3093 -5.2054 21 6 -0.4847 -8.8523 -3.8804 22 6 -0.0665 -7.4054 -3.6004 23 6 3.6329 -5.1902 0.7098 24 6 4.3652 -5.9129 1.6482 25 6 4.2498 -5.6066 2.9864 26 6 3.4168 -4.5768 3.3995 27 6 2.6908 -3.8501 2.4813 28 6 2.7894 -4.1478 1.1259 29 1 -0.4850 0.8400 0.0004 30 1 0.6246 -2.5564 -0.8920 31 1 0.6240 -2.5575 0.8880 32 1 2.3242 -4.0375 -2.1232 33 1 5.2625 -6.3377 -1.5570 34 1 4.0294 -7.3609 -3.3988 35 1 1.8419 -7.1858 -5.6984 36 1 3.1747 -7.7807 -4.6751 37 1 1.9894 -9.8975 -4.2891 38 1 2.0932 -9.6059 -6.0425 39 1 -0.1862 -10.3304 -5.4192 40 1 -0.2045 -8.6507 -6.0070 41 1 -0.1312 -9.4955 -3.0744 42 1 -1.5712 -8.9114 -3.9436 43 1 -0.4186 -7.1079 -2.6127 44 1 -0.4956 -6.7482 -4.3568 45 1 5.0175 -6.7122 1.3288 46 1 4.8138 -6.1676 3.7169 47 1 3.3369 -4.3424 4.4507 48 1 2.0449 -3.0507 2.8135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103273039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:57 Heat of formation + Delta-G solvation = 45.934724 kcal Electronic energy + Delta-G solvation = -29076.534674 eV Core-core repulsion = 25290.184693 eV Total energy + Delta-G solvation = -3786.349981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.67869 -39.91792 -37.40435 -36.32409 -34.01760 -33.08271 -32.76854 -31.34156 -30.63058 -29.49523 -28.08201 -26.79173 -25.48530 -23.92149 -23.16290 -22.50897 -21.76738 -20.78006 -20.37555 -19.25640 -18.01459 -17.33189 -16.70834 -16.01979 -15.82654 -15.23888 -15.00610 -14.87472 -14.62182 -14.41127 -14.24245 -13.93687 -13.82150 -13.39294 -13.30579 -13.08408 -13.00792 -12.78437 -12.38349 -12.32623 -11.98749 -11.82241 -11.51180 -11.41129 -11.23442 -11.14406 -11.10894 -10.90089 -10.79788 -10.70624 -10.66087 -10.36763 -10.17694 -9.81620 -9.30471 -9.19634 -8.66515 -8.56833 -8.43211 -7.37013 -6.59760 -6.22907 -4.35613 1.29715 1.92663 2.37309 3.19575 3.22179 3.26112 3.30764 3.56138 3.78704 3.92474 4.29427 4.54225 4.61036 4.64686 4.69386 4.93078 5.06612 5.08078 5.14992 5.20706 5.35869 5.39151 5.42101 5.56806 5.58957 5.60983 5.62400 5.70692 5.73495 5.77314 5.85192 5.85766 6.00354 6.10603 6.14465 6.23480 6.29707 6.46873 6.51911 6.59929 6.71280 6.76959 6.92725 7.03287 7.13101 7.20810 7.48066 7.58717 7.65990 7.66983 7.88104 8.14872 8.21163 8.62315 8.72649 9.31903 10.80487 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.010276 B = 0.003474 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.077063 B = 8057.451692 C = 9760.965381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.234 3.766 10 N -0.438 5.438 11 C 0.169 3.831 12 C -0.226 4.226 13 C 0.074 3.926 14 C -0.283 4.283 15 C 0.550 3.450 16 O -0.524 6.524 17 N -0.620 5.620 18 C 0.107 3.893 19 C -0.136 4.136 20 C -0.119 4.119 21 C -0.134 4.134 22 C 0.113 3.887 23 C -0.077 4.077 24 C -0.093 4.093 25 C -0.151 4.151 26 C -0.128 4.128 27 C -0.103 4.103 28 C 0.097 3.903 29 H 0.268 0.732 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.153 0.847 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.061 0.939 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.115 0.885 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.692 -17.561 -8.465 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.580 4.580 8 H 0.083 0.917 9 C 0.116 3.884 10 N -0.112 5.112 11 C 0.032 3.968 12 C -0.232 4.232 13 C 0.053 3.947 14 C -0.304 4.304 15 C 0.343 3.657 16 O -0.401 6.401 17 N -0.355 5.355 18 C -0.016 4.016 19 C -0.174 4.174 20 C -0.157 4.157 21 C -0.173 4.173 22 C -0.010 4.010 23 C -0.081 4.081 24 C -0.112 4.112 25 C -0.170 4.170 26 C -0.147 4.147 27 C -0.123 4.123 28 C -0.010 4.010 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.170 0.830 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.128 0.872 46 H 0.129 0.871 47 H 0.133 0.867 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.924 -16.846 -7.924 19.026 hybrid contribution 0.271 0.855 -0.318 0.952 sum 4.196 -15.991 -8.242 18.473 Atomic orbital electron populations 1.69931 1.06086 1.27631 1.49100 1.24949 0.94937 0.99509 0.94372 0.86382 0.79837 0.82277 0.78386 1.20336 1.20867 1.19566 1.21368 0.93740 0.89857 1.53017 0.91675 1.19731 0.87120 0.81934 0.99620 1.44536 1.35378 1.27725 1.03574 1.21696 0.91829 0.91847 0.91394 1.18543 1.09377 1.04160 0.91163 1.21656 0.97663 0.86865 0.88480 1.21822 0.93849 1.09995 1.04720 1.17217 0.88734 0.77991 0.81737 1.90981 1.71322 1.43931 1.33890 1.48118 1.06650 1.63079 1.17693 1.21822 0.97790 0.94177 0.87814 1.22007 0.96406 0.96986 1.02017 1.21504 0.95315 1.01219 0.97630 1.21913 1.00521 0.97005 0.97814 1.21470 0.80394 0.95740 1.03432 1.18897 0.99584 0.97449 0.92177 1.20208 0.99501 0.99377 0.92089 1.20675 1.01582 0.99622 0.95105 1.20596 0.98673 0.97153 0.98292 1.20166 1.01512 1.00811 0.89832 1.18195 0.97894 0.96080 0.88796 0.92281 0.93528 0.93667 0.82991 0.86077 0.85894 0.91742 0.89323 0.91497 0.91075 0.92001 0.91867 0.91674 0.91046 0.88973 0.92067 0.87238 0.87066 0.86701 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -14.91 9.39 -34.44 -0.32 -15.24 16 8 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.23 6.09 5.71 -5.19 -0.03 6.06 16 10 N -0.44 -10.32 2.73 -115.37 -0.31 -10.64 16 11 C 0.17 3.59 8.35 -16.45 -0.14 3.45 16 12 C -0.23 -4.35 4.63 -103.41 -0.48 -4.82 16 13 C 0.07 1.10 10.16 -37.30 -0.38 0.72 16 14 C -0.28 -3.79 9.17 -39.34 -0.36 -4.16 16 15 C 0.55 8.67 7.07 -15.02 -0.11 8.56 16 16 O -0.52 -10.55 11.79 5.12 0.06 -10.49 16 17 N -0.62 -7.82 2.97 -175.95 -0.52 -8.34 16 18 C 0.11 0.95 6.36 -3.48 -0.02 0.93 16 19 C -0.14 -1.01 6.10 -26.39 -0.16 -1.17 16 20 C -0.12 -0.91 5.88 -26.69 -0.16 -1.07 16 21 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 22 C 0.11 1.36 6.41 -3.71 -0.02 1.33 16 23 C -0.08 -1.56 6.36 -104.93 -0.67 -2.23 16 24 C -0.09 -1.63 10.09 -39.38 -0.40 -2.03 16 25 C -0.15 -2.47 10.03 -39.57 -0.40 -2.87 16 26 C -0.13 -2.24 10.01 -39.56 -0.40 -2.63 16 27 C -0.10 -2.14 9.97 -39.42 -0.39 -2.53 16 28 C 0.10 2.18 6.79 -83.96 -0.57 1.61 16 29 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.05 1.26 8.11 -51.93 -0.42 0.84 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.15 3.09 7.89 -52.48 -0.41 2.67 16 33 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.12 1.21 5.82 -52.49 -0.31 0.91 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.69 5.32 -51.93 -0.28 0.41 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.09 1.35 7.04 -51.93 -0.37 0.99 16 44 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 45 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 46 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 47 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 48 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 LS Contribution 389.51 15.07 5.87 5.87 Total: -1.00 -31.79 389.51 -11.70 -43.49 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.25 Total: 4.36 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -5.26 Total: -15.79 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -0.10 Total: -43.55 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.06 Total: -10.49 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.79 -11.70 -43.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103273039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.421 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds