Wall clock time and date at job start Tue Mar 31 2020 05:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99947 * 2 1 4 4 H 1.48497 * 109.46952 * 270.00088 * 3 2 1 5 5 H 1.48493 * 109.46993 * 29.99962 * 3 2 1 6 6 H 1.48493 * 109.47082 * 149.99987 * 3 2 1 7 7 C 1.37879 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99722 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47065 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.46979 * 179.97438 * 10 9 7 12 12 C 1.35979 * 116.99942 * 179.97438 * 11 10 9 13 13 C 1.38786 * 120.49607 * 359.97438 * 12 11 10 14 14 C 1.38787 * 118.44679 * 179.97438 * 13 12 11 15 15 C 1.38081 * 119.36375 * 0.25439 * 14 13 12 16 16 N 1.31957 * 120.95764 * 359.50333 * 15 14 13 17 17 C 1.32301 * 121.68390 * 0.48017 * 16 15 14 18 18 N 1.39450 * 119.72906 * 179.75835 * 17 16 15 19 19 C 1.34780 * 119.99815 * 0.02562 * 18 17 16 20 20 O 1.21700 * 120.00256 * 0.02562 * 19 18 17 21 21 C 1.46382 * 119.99684 * 180.02562 * 19 18 17 22 22 C 1.34841 * 119.99630 * 173.21903 * 21 19 18 23 23 C 1.47192 * 120.00012 * 349.03697 * 22 21 19 24 24 C 1.39844 * 120.17176 * 316.10786 * 23 22 21 25 25 C 1.37888 * 119.82658 * 179.74833 * 24 23 22 26 26 C 1.38405 * 120.16794 * 0.55766 * 25 24 23 27 27 C 1.38406 * 120.34744 * 359.69709 * 26 25 24 28 28 C 1.37888 * 120.17247 * 0.02562 * 27 26 25 29 29 H 0.97007 * 120.00388 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.47303 * 60.00141 * 9 7 2 31 31 H 1.09008 * 109.46954 * 300.00517 * 9 7 2 32 32 H 1.09001 * 109.47341 * 59.99720 * 10 9 7 33 33 H 1.08999 * 109.47117 * 299.99631 * 10 9 7 34 34 H 1.07999 * 120.77494 * 359.95857 * 13 12 11 35 35 H 1.08010 * 120.31584 * 179.97438 * 14 13 12 36 36 H 1.08005 * 119.52180 * 179.72444 * 15 14 13 37 37 H 0.97003 * 120.00098 * 180.02562 * 18 17 16 38 38 H 1.08002 * 119.99855 * 353.21633 * 21 19 18 39 39 H 1.07997 * 119.99276 * 169.03749 * 22 21 19 40 40 H 1.08002 * 120.08603 * 0.02912 * 24 23 22 41 41 H 1.07996 * 119.91843 * 180.27590 * 25 24 23 42 42 H 1.07997 * 119.82719 * 179.72089 * 26 25 24 43 43 H 1.07998 * 119.91018 * 180.02562 * 27 26 25 44 44 H 1.07996 * 120.08559 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5308 -4.8996 0.0001 12 6 2.2714 -6.0400 -0.0004 13 6 3.6579 -5.9794 -0.0019 14 6 4.3717 -7.1696 -0.0018 15 6 3.6879 -8.3692 -0.0055 16 7 2.3687 -8.3985 0.0007 17 6 1.6489 -7.2884 0.0011 18 7 0.2566 -7.3670 0.0027 19 6 -0.3504 -8.5703 0.0042 20 8 0.3165 -9.5884 0.0047 21 6 -1.8119 -8.6527 0.0052 22 6 -2.4198 -9.8486 -0.1312 23 6 -1.6363 -11.0323 -0.5205 24 6 -0.6892 -10.9423 -1.5454 25 6 0.0445 -12.0544 -1.9008 26 6 -0.1626 -13.2602 -1.2538 27 6 -1.1019 -13.3586 -0.2420 28 6 -1.8395 -12.2542 0.1287 29 1 -0.4851 0.8401 -0.0004 30 1 0.6241 -2.5567 -0.8902 31 1 0.6246 -2.5570 0.8897 32 1 2.8720 -3.6043 0.8894 33 1 2.8719 -3.6043 -0.8905 34 1 4.1694 -5.0282 -0.0035 35 1 5.4517 -7.1577 -0.0034 36 1 4.2408 -9.2970 -0.0099 37 1 -0.2750 -6.5556 0.0027 38 1 -2.4033 -7.7557 0.1153 39 1 -3.4815 -9.9378 0.0452 40 1 -0.5296 -10.0031 -2.0542 41 1 0.7795 -11.9854 -2.6891 42 1 0.4120 -14.1288 -1.5397 43 1 -1.2575 -14.3030 0.2584 44 1 -2.5717 -12.3324 0.9186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103851973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:53 Heat of formation + Delta-G solvation = 24.879770 kcal Electronic energy + Delta-G solvation = -27569.394037 eV Core-core repulsion = 23646.297950 eV Total energy + Delta-G solvation = -3923.096087 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.91499 -39.77901 -38.55258 -37.73795 -34.93291 -33.86374 -33.47889 -31.64431 -30.91014 -30.71504 -29.81935 -28.87011 -25.46286 -24.83267 -23.27234 -22.72488 -22.44257 -21.58470 -20.73012 -19.54875 -18.20877 -17.67180 -17.40361 -16.56513 -16.16298 -15.88659 -15.77352 -15.26355 -15.03462 -14.86514 -14.62008 -14.56024 -14.10622 -13.94674 -13.65238 -13.56620 -13.22977 -12.91505 -12.76675 -12.43863 -12.41237 -12.01773 -11.92991 -11.26236 -11.15807 -11.07339 -11.00081 -10.69642 -10.68714 -10.28011 -10.05668 -9.96270 -9.78114 -9.42375 -9.21148 -9.09207 -8.80186 -8.53212 -8.15206 -7.63111 -6.18876 -4.23821 0.56226 1.27058 1.45720 1.50509 1.84954 2.98010 3.21875 3.28036 3.29375 3.30276 3.53152 3.86322 4.05334 4.32992 4.43970 4.57586 4.77912 4.89952 4.95173 4.95596 5.07715 5.10912 5.18011 5.19681 5.29239 5.41289 5.46966 5.55299 5.82625 5.85648 5.89221 5.89629 6.02963 6.05787 6.09849 6.20240 6.37484 6.45839 6.51403 6.53598 6.57993 6.65995 6.99697 7.31261 7.34216 7.51668 7.63706 7.84863 8.10298 8.13564 8.39173 8.81352 9.41137 10.92503 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.018653 B = 0.002256 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.718699 B =12409.393003 C =13640.078912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.066 3.934 13 C -0.149 4.149 14 C -0.161 4.161 15 C 0.074 3.926 16 N -0.441 5.441 17 C 0.329 3.671 18 N -0.647 5.647 19 C 0.527 3.473 20 O -0.465 6.465 21 C -0.209 4.209 22 C -0.023 4.023 23 C -0.075 4.075 24 C -0.034 4.034 25 C -0.128 4.128 26 C -0.109 4.109 27 C -0.136 4.136 28 C -0.100 4.100 29 H 0.264 0.736 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.144 0.856 35 H 0.133 0.867 36 H 0.155 0.845 37 H 0.424 0.576 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.271 -22.510 -1.338 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.015 3.985 13 C -0.175 4.175 14 C -0.182 4.182 15 C -0.082 4.082 16 N -0.156 5.156 17 C 0.096 3.904 18 N -0.294 5.294 19 C 0.315 3.685 20 O -0.337 6.337 21 C -0.230 4.230 22 C -0.043 4.043 23 C -0.075 4.075 24 C -0.052 4.052 25 C -0.146 4.146 26 C -0.127 4.127 27 C -0.154 4.154 28 C -0.118 4.118 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.162 0.838 35 H 0.151 0.849 36 H 0.172 0.828 37 H 0.261 0.739 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.670 -23.898 -1.326 23.993 hybrid contribution 0.979 2.520 0.121 2.706 sum -0.691 -21.378 -1.205 21.423 Atomic orbital electron populations 1.69960 1.06098 1.27085 1.49508 1.24982 0.94921 0.99419 0.94800 0.86481 0.79750 0.82873 0.78268 1.20457 1.21010 1.19750 1.20944 0.93061 0.90129 1.52513 0.92344 1.19125 0.94128 0.88913 0.98879 1.23390 0.97243 0.80323 0.99810 1.86099 1.36251 1.12911 1.87590 1.19622 0.91148 0.87151 1.00600 1.21601 0.92271 1.00326 1.03328 1.21885 1.01151 0.92561 1.02616 1.22399 0.88906 0.97794 0.99126 1.67662 1.07735 1.26776 1.13397 1.17810 0.84927 0.86912 1.00739 1.43460 1.03744 1.10502 1.71719 1.18632 0.88783 0.83196 0.77897 1.90980 1.65814 1.32876 1.43987 1.22995 0.93430 0.99119 1.07474 1.22398 0.99162 0.91172 0.91523 1.18879 0.97904 0.93031 0.97644 1.21047 0.92133 0.97283 0.94783 1.20923 0.99938 0.92953 1.00806 1.21156 0.97793 0.97560 0.96220 1.20912 0.97666 0.98354 0.98511 1.21129 0.99613 0.91957 0.99103 0.92635 0.95350 0.95353 0.92971 0.92966 0.83807 0.84882 0.82761 0.73853 0.84432 0.84449 0.87009 0.86492 0.86615 0.86465 0.86339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.64 29.54 -169.99 -5.02 15.61 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.53 -14.08 9.11 -34.44 -0.31 -14.40 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 10 C 0.07 1.31 4.70 37.16 0.17 1.48 16 11 O -0.32 -5.81 9.38 -19.68 -0.18 -6.00 16 12 C 0.07 1.11 6.72 -38.91 -0.26 0.84 16 13 C -0.15 -2.18 9.14 -39.18 -0.36 -2.53 16 14 C -0.16 -2.02 10.10 -39.44 -0.40 -2.42 16 15 C 0.07 1.01 11.17 -17.56 -0.20 0.82 16 16 N -0.44 -7.28 7.87 -12.24 -0.10 -7.37 16 17 C 0.33 5.43 7.44 -154.53 -1.15 4.28 16 18 N -0.65 -9.44 5.38 -12.57 -0.07 -9.51 16 19 C 0.53 7.45 6.76 -12.98 -0.09 7.36 16 20 O -0.47 -7.72 10.40 5.19 0.05 -7.67 16 21 C -0.21 -2.19 9.91 -37.51 -0.37 -2.57 16 22 C -0.02 -0.22 9.81 -37.15 -0.36 -0.59 16 23 C -0.07 -0.87 4.53 -105.06 -0.48 -1.34 16 24 C -0.03 -0.44 6.60 -39.11 -0.26 -0.69 16 25 C -0.13 -1.51 10.03 -39.65 -0.40 -1.91 16 26 C -0.11 -1.16 10.04 -39.46 -0.40 -1.55 16 27 C -0.14 -1.39 10.03 -39.65 -0.40 -1.79 16 28 C -0.10 -1.06 9.80 -39.11 -0.38 -1.44 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.74 8.14 -51.92 -0.42 0.31 16 32 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 33 H 0.05 0.98 7.69 -51.93 -0.40 0.58 16 34 H 0.14 1.96 6.44 -52.49 -0.34 1.62 16 35 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 36 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 37 H 0.42 5.53 8.02 -40.82 -0.33 5.21 16 38 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.11 1.48 7.03 -52.49 -0.37 1.11 16 41 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 377.56 15.07 5.69 5.69 Total: -1.00 -32.52 377.56 -10.38 -42.89 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.60 Total: 5.45 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -5.88 Total: -14.36 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.57 Total: -41.62 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.13 Total: -13.66 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.52 -10.38 -42.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103851973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.774 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds