Wall clock time and date at job start Tue Mar 31 2020 06:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31458 * 1 3 3 Si 1.86804 * 119.99921 * 2 1 4 4 H 1.48502 * 109.46991 * 270.00282 * 3 2 1 5 5 H 1.48499 * 109.46780 * 30.00465 * 3 2 1 6 6 H 1.48500 * 109.46964 * 150.00547 * 3 2 1 7 7 C 1.38800 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00156 * 189.42877 * 7 2 1 9 9 N 1.37071 * 119.99670 * 9.42558 * 7 2 1 10 10 C 1.36255 * 124.87875 * 21.59286 * 9 7 2 11 11 C 1.36273 * 109.70409 * 179.97438 * 10 9 7 12 12 C 1.46945 * 126.70482 * 179.97438 * 11 10 9 13 13 N 1.30072 * 120.00091 * 23.76662 * 12 11 10 14 14 N 1.40107 * 119.99687 * 9.37690 * 13 12 11 15 15 C 1.34769 * 119.99818 * 184.75008 * 14 13 12 16 16 O 1.21757 * 120.00264 * 4.90620 * 15 14 13 17 17 C 1.46535 * 120.00218 * 184.90039 * 15 14 13 18 18 C 1.36681 * 125.46295 * 174.81779 * 17 15 14 19 19 C 1.37488 * 113.28958 * 179.97438 * 18 17 15 20 20 C 1.33820 * 115.09995 * 359.97438 * 19 18 17 21 21 S 1.70611 * 110.96454 * 0.02562 * 20 19 18 22 22 C 1.47579 * 106.59345 * 0.24171 * 11 10 9 23 23 C 1.39198 * 133.90246 * 179.73325 * 22 11 10 24 24 C 1.37910 * 119.67727 * 180.02562 * 23 22 11 25 25 C 1.38679 * 120.29100 * 359.97438 * 24 23 22 26 26 C 1.37930 * 120.60644 * 359.63898 * 25 24 23 27 27 C 1.38337 * 124.87484 * 201.54999 * 9 7 2 28 28 H 0.96997 * 120.00355 * 359.97438 * 1 2 3 29 29 H 1.08002 * 125.15095 * 359.96452 * 10 9 7 30 30 H 1.07999 * 120.00116 * 203.76719 * 12 11 10 31 31 H 0.96997 * 119.99904 * 4.75169 * 14 13 12 32 32 H 1.07999 * 123.35904 * 0.23378 * 18 17 15 33 33 H 1.07996 * 122.44954 * 180.02562 * 19 18 17 34 34 H 1.08004 * 124.51581 * 179.97438 * 20 19 18 35 35 H 1.07998 * 120.16414 * 0.02562 * 23 22 11 36 36 H 1.08002 * 119.85286 * 179.97438 * 24 23 22 37 37 H 1.07992 * 119.69584 * 180.02562 * 25 24 23 38 38 H 1.07998 * 120.03436 * 179.88666 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 2.4960 2.0465 -1.4001 5 1 1.4460 2.6526 0.7001 6 1 3.5462 1.4402 0.6999 7 6 2.0086 -1.2020 -0.0005 8 1 3.0777 -1.2084 0.1527 9 7 1.3371 -2.3810 -0.1955 10 6 0.1198 -2.4940 -0.7969 11 6 -0.2576 -3.8031 -0.8279 12 6 -1.5023 -4.3453 -1.3902 13 7 -2.1447 -3.6827 -2.3068 14 7 -1.5572 -2.5568 -2.8986 15 6 -2.2587 -1.8145 -3.7779 16 8 -3.4303 -2.0685 -3.9909 17 6 -1.6115 -0.7015 -4.4777 18 6 -2.1834 0.0574 -5.4601 19 6 -1.3499 1.0377 -5.9443 20 6 -0.1376 1.0822 -5.3793 21 16 0.0251 -0.1275 -4.1873 22 6 0.8250 -4.5692 -0.1806 23 6 1.0219 -5.9200 0.0921 24 6 2.1750 -6.3268 0.7299 25 6 3.1357 -5.3971 1.0985 26 6 2.9564 -4.0567 0.8271 27 6 1.7985 -3.6270 0.1895 28 1 -0.4850 0.8400 0.0004 29 1 -0.4587 -1.6708 -1.1896 30 1 -1.8837 -5.2939 -1.0424 31 1 -0.6456 -2.3116 -2.6755 32 1 -3.1911 -0.0949 -5.8174 33 1 -1.6517 1.7224 -6.7231 34 1 0.6351 1.7892 -5.6433 35 1 0.2753 -6.6459 -0.1944 36 1 2.3305 -7.3741 0.9432 37 1 4.0352 -5.7263 1.5971 38 1 3.7097 -3.3404 1.1200 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108272056.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:49 Heat of formation + Delta-G solvation = 106.562910 kcal Electronic energy + Delta-G solvation = -26009.281092 eV Core-core repulsion = 22331.220918 eV Total energy + Delta-G solvation = -3678.060175 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.078 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.52668 -39.19490 -37.40524 -36.51142 -35.86210 -33.42686 -32.03919 -30.84142 -29.40016 -28.91933 -27.95193 -25.56122 -24.84276 -22.65485 -21.98243 -21.11091 -20.76319 -19.42077 -18.84777 -18.53311 -17.76548 -16.49108 -15.75688 -15.65966 -15.20173 -15.06833 -14.71035 -14.59121 -14.43304 -13.84574 -13.55764 -13.23525 -13.12706 -12.98203 -12.81433 -12.68638 -12.26335 -12.10845 -11.74782 -11.62199 -11.54176 -11.38077 -10.97706 -10.85001 -10.77487 -10.61200 -10.32219 -9.74214 -9.65031 -9.48148 -8.99414 -8.81934 -8.51401 -8.18020 -7.45926 -7.13104 -6.79813 -4.63494 0.61445 1.58311 1.76770 2.00490 2.15357 2.46809 2.64930 2.85185 2.88609 2.90845 3.10960 3.53775 3.58153 3.92349 4.44297 4.52172 4.77172 4.95659 5.05411 5.35311 5.45807 5.51512 5.52842 5.63331 5.69483 5.91360 5.97291 6.04810 6.15755 6.21128 6.36992 6.45006 6.52978 6.66866 6.70804 6.82093 6.90562 7.18913 7.23751 7.30960 7.58535 7.67037 7.76606 8.05246 8.12130 8.59386 8.92962 9.00207 9.96634 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.010011 B = 0.005117 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.113350 B = 5470.628009 C = 7495.665041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.342 4.342 8 H 0.113 0.887 9 N -0.267 5.267 10 C 0.095 3.905 11 C -0.295 4.295 12 C 0.187 3.813 13 N -0.284 5.284 14 N -0.576 5.576 15 C 0.603 3.397 16 O -0.515 6.515 17 C -0.261 4.261 18 C -0.061 4.061 19 C -0.152 4.152 20 C -0.241 4.241 21 S 0.228 5.772 22 C -0.075 4.075 23 C -0.090 4.090 24 C -0.154 4.154 25 C -0.138 4.138 26 C -0.099 4.099 27 C 0.048 3.952 28 H 0.286 0.714 29 H 0.183 0.817 30 H 0.172 0.828 31 H 0.391 0.609 32 H 0.153 0.847 33 H 0.144 0.856 34 H 0.167 0.833 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.713 0.551 -5.410 6.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.164 4.164 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.470 4.470 8 H 0.131 0.869 9 N 0.073 4.927 10 C -0.049 4.049 11 C -0.306 4.306 12 C -0.020 4.020 13 N -0.089 5.089 14 N -0.322 5.322 15 C 0.389 3.611 16 O -0.391 6.391 17 C -0.383 4.383 18 C -0.095 4.095 19 C -0.183 4.183 20 C -0.379 4.379 21 S 0.496 5.504 22 C -0.081 4.081 23 C -0.109 4.109 24 C -0.173 4.173 25 C -0.158 4.158 26 C -0.119 4.119 27 C -0.060 4.060 28 H 0.097 0.903 29 H 0.199 0.801 30 H 0.189 0.811 31 H 0.236 0.764 32 H 0.171 0.829 33 H 0.161 0.839 34 H 0.185 0.815 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.267 0.549 -5.110 6.090 hybrid contribution 0.493 1.691 -0.177 1.770 sum 3.761 2.240 -5.286 6.864 Atomic orbital electron populations 1.69811 1.06253 1.29736 1.41380 1.25533 0.95762 1.00721 0.94394 0.85755 0.79519 0.79334 0.79473 1.19063 1.19819 1.18616 1.19964 0.93989 0.81629 1.51422 0.86945 1.40117 1.13216 1.04150 1.35242 1.22557 0.88741 0.96016 0.97621 1.19324 0.99032 0.92900 1.19373 1.24413 0.90054 0.97015 0.90488 1.75275 1.22658 0.98407 1.12608 1.47137 1.15909 1.27045 1.42064 1.16611 0.85804 0.80274 0.78432 1.90780 1.15070 1.69208 1.64031 1.24670 1.00361 1.05747 1.07564 1.20735 1.01066 0.93282 0.94404 1.19980 0.93440 1.01278 1.03651 1.25400 1.02735 1.06102 1.03627 1.83808 1.09498 1.24062 1.33032 1.18801 0.94412 0.92599 1.02336 1.20254 0.97311 0.93458 0.99846 1.20644 0.95216 0.98382 1.03096 1.20521 0.99474 0.92280 1.03514 1.19977 0.95736 0.95546 1.00627 1.18435 0.97275 0.85632 1.04654 0.90255 0.80061 0.81131 0.76443 0.82921 0.83881 0.81530 0.87095 0.87274 0.87112 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.77 10.79 55.49 0.60 -19.17 16 2 C 0.05 1.03 5.36 -17.50 -0.09 0.94 16 3 Si 0.94 17.12 29.56 -169.99 -5.03 12.09 16 4 H -0.27 -4.69 7.11 56.52 0.40 -4.28 16 5 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 6 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 7 C -0.34 -7.90 9.90 -15.00 -0.15 -8.05 16 8 H 0.11 2.45 7.85 -52.49 -0.41 2.03 16 9 N -0.27 -6.28 2.90 -59.47 -0.17 -6.45 16 10 C 0.10 2.21 7.80 -16.29 -0.13 2.08 16 11 C -0.30 -6.33 5.94 -103.27 -0.61 -6.95 16 12 C 0.19 3.60 11.58 -14.77 -0.17 3.42 16 13 N -0.28 -6.03 11.14 32.08 0.36 -5.68 16 14 N -0.58 -12.18 5.35 30.24 0.16 -12.02 16 15 C 0.60 12.58 7.89 -12.92 -0.10 12.47 16 16 O -0.51 -11.95 17.19 5.14 0.09 -11.86 16 17 C -0.26 -4.56 6.45 -36.80 -0.24 -4.80 16 18 C -0.06 -0.90 10.02 -40.42 -0.40 -1.31 16 19 C -0.15 -1.86 10.15 -41.41 -0.42 -2.28 16 20 C -0.24 -3.02 10.92 29.18 0.32 -2.70 16 21 S 0.23 3.58 22.17 -107.50 -2.38 1.19 16 22 C -0.08 -1.57 6.36 -104.90 -0.67 -2.24 16 23 C -0.09 -1.59 10.09 -39.35 -0.40 -1.98 16 24 C -0.15 -2.49 10.03 -39.54 -0.40 -2.89 16 25 C -0.14 -2.30 10.02 -39.53 -0.40 -2.69 16 26 C -0.10 -1.90 9.93 -39.42 -0.39 -2.29 16 27 C 0.05 1.06 6.73 -83.82 -0.56 0.50 16 28 H 0.29 6.35 8.31 -40.82 -0.34 6.01 16 29 H 0.18 4.32 4.50 -52.49 -0.24 4.08 16 30 H 0.17 2.59 8.06 -52.49 -0.42 2.17 16 31 H 0.39 8.13 4.04 -182.59 -0.74 7.39 16 32 H 0.15 2.08 8.06 -52.49 -0.42 1.65 16 33 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.17 1.62 8.06 -52.48 -0.42 1.19 16 35 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.11 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -28.48 348.74 -9.83 -38.31 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -3.90 Total: 17.09 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -4.81 Total: -18.77 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.95 Total: -43.31 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -2.38 Total: 1.19 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.48 -9.83 -38.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108272056.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.876 kcal (2) G-P(sol) polarization free energy of solvation -28.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds