Wall clock time and date at job start Tue Mar 31 2020 06:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31458 * 1 3 3 Si 1.86804 * 119.99921 * 2 1 4 4 H 1.48502 * 109.46991 * 270.00282 * 3 2 1 5 5 H 1.48499 * 109.46780 * 30.00465 * 3 2 1 6 6 H 1.48500 * 109.46964 * 150.00547 * 3 2 1 7 7 C 1.38800 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00156 * 189.42877 * 7 2 1 9 9 N 1.37071 * 119.99670 * 9.42558 * 7 2 1 10 10 C 1.36255 * 124.87875 * 21.59286 * 9 7 2 11 11 C 1.36273 * 109.70409 * 179.97438 * 10 9 7 12 12 C 1.46945 * 126.70482 * 179.97438 * 11 10 9 13 13 N 1.30072 * 120.00091 * 23.76662 * 12 11 10 14 14 N 1.40107 * 119.99687 * 9.37690 * 13 12 11 15 15 C 1.34769 * 119.99818 * 184.75008 * 14 13 12 16 16 O 1.21757 * 120.00264 * 4.90620 * 15 14 13 17 17 C 1.46535 * 120.00218 * 184.90039 * 15 14 13 18 18 C 1.36681 * 125.46295 * 174.81779 * 17 15 14 19 19 C 1.37488 * 113.28958 * 179.97438 * 18 17 15 20 20 C 1.33820 * 115.09995 * 359.97438 * 19 18 17 21 21 S 1.70611 * 110.96454 * 0.02562 * 20 19 18 22 22 C 1.47579 * 106.59345 * 0.24171 * 11 10 9 23 23 C 1.39198 * 133.90246 * 179.73325 * 22 11 10 24 24 C 1.37910 * 119.67727 * 180.02562 * 23 22 11 25 25 C 1.38679 * 120.29100 * 359.97438 * 24 23 22 26 26 C 1.37930 * 120.60644 * 359.63898 * 25 24 23 27 27 C 1.38337 * 124.87484 * 201.54999 * 9 7 2 28 28 H 0.96997 * 120.00355 * 359.97438 * 1 2 3 29 29 H 1.08002 * 125.15095 * 359.96452 * 10 9 7 30 30 H 1.07999 * 120.00116 * 203.76719 * 12 11 10 31 31 H 0.96997 * 119.99904 * 4.75169 * 14 13 12 32 32 H 1.07999 * 123.35904 * 0.23378 * 18 17 15 33 33 H 1.07996 * 122.44954 * 180.02562 * 19 18 17 34 34 H 1.08004 * 124.51581 * 179.97438 * 20 19 18 35 35 H 1.07998 * 120.16414 * 0.02562 * 23 22 11 36 36 H 1.08002 * 119.85286 * 179.97438 * 24 23 22 37 37 H 1.07992 * 119.69584 * 180.02562 * 25 24 23 38 38 H 1.07998 * 120.03436 * 179.88666 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 2.4960 2.0465 -1.4001 5 1 1.4460 2.6526 0.7001 6 1 3.5462 1.4402 0.6999 7 6 2.0086 -1.2020 -0.0005 8 1 3.0777 -1.2084 0.1527 9 7 1.3371 -2.3810 -0.1955 10 6 0.1198 -2.4940 -0.7969 11 6 -0.2576 -3.8031 -0.8279 12 6 -1.5023 -4.3453 -1.3902 13 7 -2.1447 -3.6827 -2.3068 14 7 -1.5572 -2.5568 -2.8986 15 6 -2.2587 -1.8145 -3.7779 16 8 -3.4303 -2.0685 -3.9909 17 6 -1.6115 -0.7015 -4.4777 18 6 -2.1834 0.0574 -5.4601 19 6 -1.3499 1.0377 -5.9443 20 6 -0.1376 1.0822 -5.3793 21 16 0.0251 -0.1275 -4.1873 22 6 0.8250 -4.5692 -0.1806 23 6 1.0219 -5.9200 0.0921 24 6 2.1750 -6.3268 0.7299 25 6 3.1357 -5.3971 1.0985 26 6 2.9564 -4.0567 0.8271 27 6 1.7985 -3.6270 0.1895 28 1 -0.4850 0.8400 0.0004 29 1 -0.4587 -1.6708 -1.1896 30 1 -1.8837 -5.2939 -1.0424 31 1 -0.6456 -2.3116 -2.6755 32 1 -3.1911 -0.0949 -5.8174 33 1 -1.6517 1.7224 -6.7231 34 1 0.6351 1.7892 -5.6433 35 1 0.2753 -6.6459 -0.1944 36 1 2.3305 -7.3741 0.9432 37 1 4.0352 -5.7263 1.5971 38 1 3.7097 -3.3404 1.1200 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108272056.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:48 Heat of formation + Delta-G solvation = 92.267181 kcal Electronic energy + Delta-G solvation = -26009.901002 eV Core-core repulsion = 22331.220918 eV Total energy + Delta-G solvation = -3678.680084 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.078 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.09310 -40.71404 -38.62271 -37.96492 -37.43803 -35.05790 -33.62990 -32.35004 -30.66450 -30.40314 -29.46875 -27.14469 -26.14942 -24.10436 -23.46471 -22.58677 -22.25371 -20.88449 -20.20705 -19.89047 -19.29614 -18.07236 -17.22112 -16.98607 -16.65449 -16.51316 -16.23530 -16.01145 -15.94492 -15.42868 -14.92598 -14.68824 -14.60632 -14.41564 -14.02761 -13.75155 -13.67432 -13.42233 -13.28220 -13.18595 -13.00892 -12.95649 -12.39465 -12.27799 -12.12234 -11.92437 -11.74797 -11.35107 -11.24213 -11.06590 -10.58531 -10.03914 -9.72945 -9.65075 -8.98438 -8.78974 -8.40937 -6.35869 -0.59741 0.25467 0.38594 0.71190 0.89550 1.06132 1.33457 1.36336 1.47818 1.49172 1.61683 2.02634 2.07112 2.35094 2.85571 2.89303 3.27014 3.59660 3.98441 4.05688 4.07790 4.24210 4.28251 4.34807 4.40939 4.48554 4.65168 4.70778 4.90722 4.94320 4.98114 5.09778 5.11268 5.20680 5.32029 5.33365 5.41148 5.65090 5.77814 5.87153 6.03902 6.13686 6.32251 6.43782 6.48942 6.95045 7.34217 7.35499 8.30232 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.010011 B = 0.005117 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.113350 B = 5470.628009 C = 7495.665041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.013 3.987 3 Si 0.994 3.006 4 H -0.253 1.253 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.367 4.367 8 H 0.116 0.884 9 N -0.285 5.285 10 C 0.072 3.928 11 C -0.304 4.304 12 C 0.197 3.803 13 N -0.314 5.314 14 N -0.581 5.581 15 C 0.596 3.404 16 O -0.554 6.554 17 C -0.302 4.302 18 C -0.045 4.045 19 C -0.148 4.148 20 C -0.213 4.213 21 S 0.183 5.817 22 C -0.094 4.094 23 C -0.094 4.094 24 C -0.145 4.145 25 C -0.124 4.124 26 C -0.123 4.123 27 C 0.015 3.985 28 H 0.285 0.715 29 H 0.170 0.830 30 H 0.212 0.788 31 H 0.391 0.609 32 H 0.161 0.839 33 H 0.186 0.814 34 H 0.204 0.796 35 H 0.141 0.859 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.340 0.232 -5.887 7.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.194 4.194 3 Si 0.814 3.186 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.178 1.178 7 C -0.494 4.494 8 H 0.133 0.867 9 N 0.053 4.947 10 C -0.072 4.072 11 C -0.316 4.316 12 C -0.009 4.009 13 N -0.119 5.119 14 N -0.326 5.326 15 C 0.385 3.615 16 O -0.433 6.433 17 C -0.423 4.423 18 C -0.080 4.080 19 C -0.178 4.178 20 C -0.350 4.350 21 S 0.450 5.550 22 C -0.100 4.100 23 C -0.113 4.113 24 C -0.163 4.163 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.092 4.092 28 H 0.096 0.904 29 H 0.186 0.814 30 H 0.228 0.772 31 H 0.236 0.764 32 H 0.179 0.821 33 H 0.204 0.796 34 H 0.221 0.779 35 H 0.159 0.841 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.928 0.207 -5.579 7.447 hybrid contribution 0.062 1.659 -0.007 1.660 sum 4.990 1.866 -5.586 7.719 Atomic orbital electron populations 1.69931 1.07677 1.30211 1.42577 1.26366 0.96278 1.03364 0.93422 0.84910 0.78412 0.75263 0.80042 1.17714 1.20054 1.17816 1.20268 0.94391 0.82365 1.52379 0.86670 1.40277 1.13492 1.04796 1.36104 1.22557 0.89249 0.96588 0.98841 1.19614 0.99996 0.92669 1.19300 1.24991 0.88904 0.97727 0.89275 1.75232 1.23673 0.99140 1.13870 1.47246 1.15992 1.27131 1.42191 1.17190 0.85577 0.80701 0.78059 1.90725 1.16442 1.70668 1.65514 1.24454 1.01565 1.06588 1.09705 1.21127 1.01600 0.92556 0.92673 1.20334 0.92581 1.00837 1.04081 1.25835 1.03630 1.04538 1.01023 1.84005 1.09202 1.26355 1.35433 1.19105 0.93950 0.94012 1.02920 1.20680 0.98741 0.92467 0.99401 1.21171 0.93875 1.00380 1.00918 1.21021 1.00626 0.91047 1.01616 1.20251 0.95336 0.97167 1.01586 1.19006 0.98803 0.85504 1.05885 0.90430 0.81373 0.77178 0.76402 0.82116 0.79643 0.77907 0.84150 0.83061 0.83433 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.14 10.79 21.64 0.23 -42.91 16 2 C 0.01 0.58 5.36 84.88 0.46 1.03 16 3 Si 0.99 35.43 29.56 68.60 2.03 37.46 16 4 H -0.25 -8.41 7.11 99.48 0.71 -7.70 16 5 H -0.28 -9.82 7.11 99.48 0.71 -9.12 16 6 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 7 C -0.37 -17.69 9.90 84.01 0.83 -16.86 16 8 H 0.12 5.23 7.85 -2.91 -0.02 5.21 16 9 N -0.29 -14.06 2.90 -342.08 -0.99 -15.05 16 10 C 0.07 3.52 7.80 83.55 0.65 4.17 16 11 C -0.30 -13.48 5.94 -18.99 -0.11 -13.59 16 12 C 0.20 7.71 11.58 87.24 1.01 8.72 16 13 N -0.31 -13.88 11.14 -52.42 -0.58 -14.47 16 14 N -0.58 -26.12 5.35 -176.45 -0.94 -27.07 16 15 C 0.60 26.40 7.89 86.41 0.68 27.08 16 16 O -0.55 -27.17 17.19 -4.53 -0.08 -27.24 16 17 C -0.30 -10.91 6.45 24.07 0.16 -10.75 16 18 C -0.04 -1.29 10.02 21.73 0.22 -1.07 16 19 C -0.15 -3.20 10.15 21.09 0.21 -2.98 16 20 C -0.21 -4.80 10.92 66.81 0.73 -4.07 16 21 S 0.18 5.85 22.17 -56.49 -1.25 4.60 16 22 C -0.09 -3.93 6.36 -20.04 -0.13 -4.05 16 23 C -0.09 -3.09 10.09 22.42 0.23 -2.87 16 24 C -0.14 -4.10 10.03 22.30 0.22 -3.87 16 25 C -0.12 -3.73 10.02 22.30 0.22 -3.51 16 26 C -0.12 -4.68 9.93 22.38 0.22 -4.46 16 27 C 0.02 0.69 6.73 38.83 0.26 0.95 16 28 H 0.29 13.33 8.31 -92.71 -0.77 12.56 16 29 H 0.17 8.61 4.50 -2.91 -0.01 8.60 16 30 H 0.21 6.16 8.06 -2.91 -0.02 6.13 16 31 H 0.39 17.49 4.04 -213.32 -0.86 16.63 16 32 H 0.16 4.29 8.06 -2.91 -0.02 4.26 16 33 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.20 3.08 8.06 -2.91 -0.02 3.05 16 35 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 36 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 37 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 38 H 0.11 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -67.14 348.74 4.54 -62.60 By element: Atomic # 1 Polarization: 47.95 SS G_CDS: 0.26 Total: 48.21 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 5.86 Total: -26.14 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -2.29 Total: -99.49 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.08 Total: -27.24 kcal Atomic # 14 Polarization: 35.43 SS G_CDS: 2.03 Total: 37.46 kcal Atomic # 16 Polarization: 5.85 SS G_CDS: -1.25 Total: 4.60 kcal Total: -67.14 4.54 -62.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108272056.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.870 kcal (2) G-P(sol) polarization free energy of solvation -67.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds