Wall clock time and date at job start Tue Mar 31 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47231 * 2 1 4 4 C 1.50700 * 109.47361 * 119.99963 * 2 1 3 5 5 H 1.07995 * 119.99955 * 120.00206 * 4 2 1 6 6 C 1.37879 * 119.99932 * 300.00274 * 4 2 1 7 7 N 1.31519 * 120.00213 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00015 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46896 * 60.00505 * 8 6 4 10 10 H 1.48501 * 109.47389 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47254 * 300.00348 * 8 6 4 12 12 S 1.81396 * 109.47336 * 240.00121 * 2 1 3 13 13 C 1.76199 * 102.99954 * 69.42386 * 12 2 1 14 14 C 1.38727 * 120.10335 * 6.23324 * 13 12 2 15 15 C 1.38256 * 119.99479 * 180.27782 * 14 13 12 16 16 C 1.38265 * 120.19428 * 359.72529 * 15 14 13 17 17 C 1.38288 * 120.20539 * 359.97438 * 16 15 14 18 18 C 1.38634 * 120.00313 * 359.97438 * 17 16 15 19 19 N 1.40013 * 120.09552 * 180.02562 * 18 17 16 20 20 C 1.46494 * 120.00201 * 359.97438 * 19 18 17 21 21 C 1.50699 * 109.47336 * 180.02562 * 20 19 18 22 22 C 1.37963 * 120.07564 * 260.00094 * 21 20 19 23 23 C 1.38340 * 120.14801 * 179.97438 * 22 21 20 24 24 C 1.38389 * 120.30702 * 359.97438 * 23 22 21 25 25 C 1.37919 * 120.15036 * 0.02562 * 24 23 22 26 26 C 1.39613 * 120.07507 * 79.97817 * 21 20 19 27 27 C 1.43202 * 120.15119 * 0.02562 * 26 21 20 28 28 N 6.84309 * 76.12852 * 233.16964 * 2 1 3 29 29 H 1.08995 * 109.47059 * 307.43952 * 1 2 3 30 30 H 1.08994 * 109.47194 * 67.44225 * 1 2 3 31 31 H 1.09005 * 109.46742 * 187.43917 * 1 2 3 32 32 H 0.96994 * 119.99940 * 179.97438 * 7 6 4 33 33 H 1.08004 * 120.00316 * 0.02562 * 14 13 12 34 34 H 1.07998 * 119.89834 * 179.74631 * 15 14 13 35 35 H 1.07999 * 119.89178 * 180.02562 * 16 15 14 36 36 H 1.07997 * 119.99416 * 180.02562 * 17 16 15 37 37 H 0.97008 * 119.99792 * 180.02562 * 19 18 17 38 38 H 1.09006 * 109.47105 * 59.99899 * 20 19 18 39 39 H 1.09003 * 109.46973 * 300.00416 * 20 19 18 40 40 H 1.07995 * 119.92821 * 0.25724 * 22 21 20 41 41 H 1.08008 * 119.84842 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.92089 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.07915 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8302 2.6035 8 14 2.3214 -1.1203 4.0079 9 1 3.8065 -1.1207 4.0082 10 1 1.8260 -0.4206 5.2205 11 1 1.8260 -2.5202 4.0077 12 16 2.1347 -0.8551 -1.4811 13 6 1.6980 0.2495 -2.7825 14 6 1.1641 1.4956 -2.4878 15 6 0.8168 2.3582 -3.5109 16 6 1.0053 1.9854 -4.8289 17 6 1.5426 0.7478 -5.1319 18 6 1.8948 -0.1234 -4.1126 19 7 2.4395 -1.3768 -4.4171 20 6 2.6375 -1.7695 -5.8144 21 6 3.2322 -3.1531 -5.8680 22 6 4.5862 -3.3162 -6.0768 23 6 5.1338 -4.5856 -6.1257 24 6 4.3290 -5.7000 -5.9652 25 6 2.9739 -5.5515 -5.7558 26 6 2.4143 -4.2730 -5.7059 27 6 1.0081 -4.1112 -5.4889 28 7 -0.1106 -3.9824 -5.3176 29 1 -0.3633 0.6247 0.8159 30 1 -0.3633 0.3942 -0.9490 31 1 -0.3633 -1.0191 0.1331 32 1 0.7089 1.1613 3.4844 33 1 1.0159 1.7901 -1.4593 34 1 0.3975 3.3263 -3.2798 35 1 0.7327 2.6633 -5.6243 36 1 1.6887 0.4603 -6.1626 37 1 2.6850 -1.9854 -3.7027 38 1 3.3135 -1.0641 -6.2978 39 1 1.6783 -1.7663 -6.3322 40 1 5.2207 -2.4507 -6.1978 41 1 6.1943 -4.7076 -6.2898 42 1 4.7630 -6.6881 -6.0049 43 1 2.3470 -6.4219 -5.6303 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109002083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:11 Heat of formation + Delta-G solvation = 76.793312 kcal Electronic energy + Delta-G solvation = -25217.727936 eV Core-core repulsion = 21739.635860 eV Total energy + Delta-G solvation = -3478.092076 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.11992 -38.80945 -36.45095 -35.60861 -34.09228 -32.17140 -31.64458 -31.01919 -29.89554 -28.71461 -25.93668 -25.29669 -24.02759 -22.73201 -22.01048 -21.37672 -20.86435 -19.00932 -17.76116 -16.58878 -16.24940 -16.11797 -15.98127 -15.61193 -14.93811 -14.76100 -14.37390 -14.02700 -13.90781 -13.77517 -13.56771 -13.41701 -13.29766 -12.98803 -12.84897 -12.60803 -12.49756 -12.39921 -11.86731 -11.72265 -11.62225 -11.38057 -11.10624 -10.98030 -10.95215 -10.55689 -10.38629 -9.93567 -9.87951 -9.37967 -9.35957 -9.25208 -8.99879 -8.84178 -8.47491 -7.46853 -6.29073 -6.18504 -4.26913 0.41715 0.86655 1.77760 2.00356 2.56390 2.62150 2.74491 3.25598 3.29393 3.33180 3.41536 3.65379 3.70854 3.92757 4.23666 4.26310 4.32606 4.42021 4.60719 4.86141 5.01076 5.13813 5.19283 5.25694 5.27595 5.41172 5.44229 5.55298 5.67638 5.85802 5.91089 5.99439 6.04530 6.07535 6.32977 6.40074 6.54616 6.64746 6.75833 6.80812 6.84141 7.01697 7.18941 7.38093 7.38993 7.58134 7.64269 7.80098 7.92236 8.03975 8.71341 9.36657 10.87958 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010219 B = 0.003433 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.316374 B = 8154.220683 C = 9810.511345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.511 4.511 5 H 0.065 0.935 6 C 0.071 3.929 7 N -0.887 5.887 8 Si 0.905 3.095 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.275 1.275 12 S -0.184 6.184 13 C -0.129 4.129 14 C -0.088 4.088 15 C -0.159 4.159 16 C -0.095 4.095 17 C -0.189 4.189 18 C 0.222 3.778 19 N -0.741 5.741 20 C 0.163 3.837 21 C -0.058 4.058 22 C -0.099 4.099 23 C -0.093 4.093 24 C -0.115 4.115 25 C -0.074 4.074 26 C -0.007 4.007 27 C 0.243 3.757 28 N -0.397 5.397 29 H 0.088 0.912 30 H 0.019 0.981 31 H 0.040 0.960 32 H 0.266 0.734 33 H 0.133 0.867 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.406 0.594 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.430 -7.224 -20.051 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 H 0.068 0.932 4 C -0.550 4.550 5 H 0.083 0.917 6 C -0.133 4.133 7 N -0.524 5.524 8 Si 0.732 3.268 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 S 0.062 5.938 13 C -0.245 4.245 14 C -0.113 4.113 15 C -0.180 4.180 16 C -0.116 4.116 17 C -0.213 4.213 18 C 0.115 3.885 19 N -0.375 5.375 20 C 0.039 3.961 21 C -0.061 4.061 22 C -0.118 4.118 23 C -0.112 4.112 24 C -0.133 4.133 25 C -0.094 4.094 26 C -0.011 4.011 27 C -0.073 4.073 28 N -0.072 5.072 29 H 0.107 0.893 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.151 0.849 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.243 0.757 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.200 -8.053 -19.782 22.240 hybrid contribution 0.117 0.534 1.123 1.249 sum 6.317 -7.519 -18.659 21.086 Atomic orbital electron populations 1.22084 0.96379 1.01522 0.99807 1.21022 0.95475 0.97180 0.88755 0.93216 1.20590 1.32578 1.13156 0.88693 0.91651 1.24882 0.94669 0.94939 0.98800 1.69876 1.35870 1.22499 1.24160 0.86430 0.79302 0.79689 0.81339 1.19940 1.21030 1.20000 1.84898 1.75317 1.32047 1.01525 1.21424 1.08506 0.99384 0.95213 1.21246 0.97600 0.92215 1.00246 1.20807 1.04704 0.99943 0.92559 1.20742 0.99102 0.95630 0.96168 1.20393 1.08357 0.95536 0.97054 1.17252 0.94229 0.85588 0.91437 1.44629 1.70968 1.16284 1.05595 1.20176 0.99900 0.91012 0.85034 1.19954 0.93711 0.93816 0.98570 1.21078 0.93464 0.98202 0.99025 1.21424 1.00442 0.92220 0.97070 1.21155 0.93011 0.99520 0.99598 1.21211 0.95668 0.95439 0.97099 1.15937 0.85141 0.94343 1.05687 1.25708 0.92746 0.94320 0.94535 1.81414 1.11888 1.06541 1.07373 0.89303 0.96158 0.94104 0.92431 0.84940 0.86697 0.86772 0.86672 0.75709 0.90758 0.91739 0.84592 0.84975 0.84801 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.35 37.16 0.31 -3.09 16 2 C 0.10 2.60 1.98 -27.88 -0.06 2.55 16 3 H 0.05 1.34 6.87 -51.92 -0.36 0.98 16 4 C -0.51 -13.96 8.57 -34.44 -0.30 -14.26 16 5 H 0.07 1.79 7.71 -52.49 -0.40 1.39 16 6 C 0.07 1.93 5.30 -17.82 -0.09 1.83 16 7 N -0.89 -24.58 11.41 55.43 0.63 -23.95 16 8 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 S -0.18 -4.07 19.75 -107.50 -2.12 -6.19 16 13 C -0.13 -2.56 5.96 -38.92 -0.23 -2.80 16 14 C -0.09 -1.72 8.01 -39.39 -0.32 -2.03 16 15 C -0.16 -2.61 10.04 -39.56 -0.40 -3.01 16 16 C -0.09 -1.40 10.04 -39.55 -0.40 -1.79 16 17 C -0.19 -2.84 9.31 -39.42 -0.37 -3.21 16 18 C 0.22 3.80 6.66 -83.49 -0.56 3.25 16 19 N -0.74 -10.95 5.68 -59.62 -0.34 -11.29 16 20 C 0.16 1.78 4.47 -5.20 -0.02 1.75 16 21 C -0.06 -0.54 5.28 -104.21 -0.55 -1.09 16 22 C -0.10 -0.72 9.66 -39.64 -0.38 -1.10 16 23 C -0.09 -0.55 10.04 -39.49 -0.40 -0.94 16 24 C -0.11 -0.67 10.03 -39.64 -0.40 -1.07 16 25 C -0.07 -0.56 9.76 -39.17 -0.38 -0.94 16 26 C -0.01 -0.07 5.73 -106.93 -0.61 -0.69 16 27 C 0.24 3.17 14.00 -22.37 -0.31 2.86 16 28 N -0.40 -6.32 18.56 41.96 0.78 -5.54 16 29 H 0.09 2.32 6.31 -51.93 -0.33 2.00 16 30 H 0.02 0.45 6.08 -51.93 -0.32 0.14 16 31 H 0.04 1.02 8.13 -51.93 -0.42 0.59 16 32 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.13 2.78 5.01 -52.48 -0.26 2.52 16 34 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.12 1.42 6.74 -52.49 -0.35 1.07 16 37 H 0.41 6.48 7.01 -40.82 -0.29 6.20 16 38 H 0.07 0.68 7.82 -51.93 -0.41 0.27 16 39 H 0.06 0.74 7.29 -51.93 -0.38 0.36 16 40 H 0.14 0.79 8.04 -52.49 -0.42 0.36 16 41 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 42 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 43 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 375.05 15.07 5.65 5.65 Total: -1.00 -30.81 375.05 -11.06 -41.88 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.19 Total: 7.24 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -5.46 Total: -23.77 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 1.07 Total: -40.78 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -4.07 SS G_CDS: -2.12 Total: -6.19 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.81 -11.06 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109002083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.671 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds