Wall clock time and date at job start Tue Mar 31 2020 05:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47154 * 2 1 4 4 C 1.50700 * 109.47256 * 239.99897 * 2 1 3 5 5 H 1.08000 * 120.00051 * 239.99560 * 4 2 1 6 6 C 1.37878 * 119.99957 * 60.00030 * 4 2 1 7 7 N 1.31521 * 119.99787 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 119.99977 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47590 * 89.99998 * 8 6 4 10 10 H 1.48503 * 109.46990 * 209.99478 * 8 6 4 11 11 H 1.48494 * 109.47298 * 329.99648 * 8 6 4 12 12 S 1.81405 * 109.47493 * 119.99767 * 2 1 3 13 13 C 1.76193 * 103.00189 * 189.38537 * 12 2 1 14 14 C 1.38731 * 120.10442 * 5.71763 * 13 12 2 15 15 C 1.38247 * 119.99691 * 180.23456 * 14 13 12 16 16 C 1.38269 * 120.19591 * 359.81460 * 15 14 13 17 17 C 1.38294 * 120.20366 * 359.95147 * 16 15 14 18 18 C 1.38639 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.40015 * 120.09269 * 179.97438 * 18 17 16 20 20 C 1.46496 * 120.00092 * 0.02562 * 19 18 17 21 21 C 1.50701 * 109.47030 * 179.97438 * 20 19 18 22 22 C 1.37964 * 120.07502 * 259.99874 * 21 20 19 23 23 C 1.38349 * 120.15021 * 179.97438 * 22 21 20 24 24 C 1.38381 * 120.30141 * 359.97438 * 23 22 21 25 25 C 1.37929 * 120.15566 * 0.02562 * 24 23 22 26 26 C 1.39612 * 120.07654 * 79.97766 * 21 20 19 27 27 C 1.43199 * 120.14965 * 359.97438 * 26 21 20 28 28 N 6.85118 * 116.04263 * 155.92064 * 2 1 3 29 29 H 1.08990 * 109.47310 * 53.79489 * 1 2 3 30 30 H 1.09002 * 109.46801 * 173.80413 * 1 2 3 31 31 H 1.09000 * 109.46874 * 293.79679 * 1 2 3 32 32 H 0.97004 * 119.99548 * 180.02562 * 7 6 4 33 33 H 1.08002 * 120.00307 * 0.02597 * 14 13 12 34 34 H 1.07996 * 119.90337 * 179.78804 * 15 14 13 35 35 H 1.08000 * 119.89783 * 179.97438 * 16 15 14 36 36 H 1.07995 * 119.99878 * 180.02562 * 17 16 15 37 37 H 0.97003 * 119.99554 * 179.97438 * 19 18 17 38 38 H 1.08997 * 109.47083 * 59.99773 * 20 19 18 39 39 H 1.08998 * 109.47058 * 299.99636 * 20 19 18 40 40 H 1.07998 * 119.92907 * 0.25873 * 22 21 20 41 41 H 1.07996 * 119.84711 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.92066 * 179.97438 * 24 23 22 43 43 H 1.07993 * 120.07509 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0078 9 1 1.3428 -2.1617 -4.4119 10 1 2.4865 -0.1414 -5.1122 11 1 3.6293 -1.7583 -3.7121 12 16 2.1348 -0.8551 1.4812 13 6 3.8638 -0.5171 1.4557 14 6 4.3902 0.3458 0.5056 15 6 5.7479 0.6056 0.4847 16 6 6.5842 0.0106 1.4111 17 6 6.0675 -0.8472 2.3649 18 6 4.7072 -1.1133 2.3938 19 7 4.1821 -1.9819 3.3583 20 6 5.0703 -2.6106 4.3390 21 6 4.2620 -3.4914 5.2566 22 6 3.9018 -3.0389 6.5092 23 6 3.1593 -3.8460 7.3526 24 6 2.7726 -5.1112 6.9468 25 6 3.1259 -5.5762 5.6972 26 6 3.8758 -4.7670 4.8410 27 6 4.2453 -5.2428 3.5419 28 7 4.5379 -5.6199 2.5115 29 1 -0.3633 0.6070 -0.8291 30 1 -0.3633 -1.0217 -0.1109 31 1 -0.3633 0.4147 0.9403 32 1 0.7081 1.1608 -3.4844 33 1 3.7400 0.8121 -0.2198 34 1 6.1566 1.2750 -0.2578 35 1 7.6442 0.2166 1.3901 36 1 6.7237 -1.3099 3.0872 37 1 3.2300 -2.1667 3.3774 38 1 5.5700 -1.8385 4.9241 39 1 5.8159 -3.2130 3.8203 40 1 4.1960 -2.0506 6.8303 41 1 2.8804 -3.4870 8.3322 42 1 2.1935 -5.7362 7.6104 43 1 2.8230 -6.5636 5.3817 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109002087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:15 Heat of formation + Delta-G solvation = 76.930822 kcal Electronic energy + Delta-G solvation = -25399.225893 eV Core-core repulsion = 21921.139780 eV Total energy + Delta-G solvation = -3478.086113 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.09679 -38.67604 -36.48041 -35.51026 -34.07396 -32.11461 -31.63180 -30.57239 -30.13308 -28.61509 -25.90885 -25.27418 -24.00665 -22.63659 -22.07409 -21.36848 -20.58331 -18.97977 -17.39098 -16.45867 -16.40413 -16.10059 -15.92588 -15.57533 -14.92730 -14.74063 -14.29368 -13.96921 -13.84475 -13.64428 -13.44730 -13.36904 -13.27731 -12.99083 -12.89659 -12.71509 -12.49627 -12.30827 -11.69345 -11.69074 -11.52573 -11.36335 -11.11546 -10.92485 -10.72301 -10.46794 -10.32024 -9.97177 -9.76464 -9.34701 -9.33654 -9.23527 -8.92407 -8.85805 -8.44252 -7.35345 -6.33365 -6.03687 -4.22597 0.43962 0.87894 1.93635 2.15636 2.62654 2.72955 2.78682 3.26570 3.33117 3.39053 3.46492 3.68861 3.72187 3.97218 4.28641 4.37392 4.39234 4.45346 4.61443 4.87503 5.02750 5.16875 5.22960 5.30886 5.36754 5.45656 5.56701 5.60116 5.81538 5.87508 6.00668 6.06418 6.09133 6.21613 6.41143 6.52956 6.63145 6.69510 6.75520 6.84713 6.92787 7.20445 7.33211 7.40266 7.42478 7.61650 7.69619 7.84320 8.00556 8.05850 8.79216 9.42209 10.90197 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.003349 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.230448 B = 8357.765765 C = 8892.061268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.100 3.900 3 H 0.050 0.950 4 C -0.515 4.515 5 H 0.066 0.934 6 C 0.070 3.930 7 N -0.889 5.889 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.271 1.271 12 S -0.205 6.205 13 C -0.116 4.116 14 C -0.068 4.068 15 C -0.162 4.162 16 C -0.094 4.094 17 C -0.194 4.194 18 C 0.219 3.781 19 N -0.742 5.742 20 C 0.164 3.836 21 C -0.057 4.057 22 C -0.100 4.100 23 C -0.094 4.094 24 C -0.115 4.115 25 C -0.074 4.074 26 C -0.007 4.007 27 C 0.241 3.759 28 N -0.395 5.395 29 H 0.097 0.903 30 H 0.038 0.962 31 H 0.019 0.981 32 H 0.264 0.736 33 H 0.144 0.856 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.404 0.596 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.263 -6.465 20.728 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.028 4.028 3 H 0.068 0.932 4 C -0.554 4.554 5 H 0.084 0.916 6 C -0.134 4.134 7 N -0.527 5.527 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.196 1.196 12 S 0.040 5.960 13 C -0.232 4.232 14 C -0.092 4.092 15 C -0.184 4.184 16 C -0.116 4.116 17 C -0.218 4.218 18 C 0.113 3.887 19 N -0.376 5.376 20 C 0.039 3.961 21 C -0.060 4.060 22 C -0.118 4.118 23 C -0.112 4.112 24 C -0.134 4.134 25 C -0.095 4.095 26 C -0.011 4.011 27 C -0.074 4.074 28 N -0.069 5.069 29 H 0.115 0.885 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.241 0.759 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.009 -7.639 19.872 22.121 hybrid contribution 0.564 0.269 -1.484 1.610 sum 6.574 -7.370 18.388 20.872 Atomic orbital electron populations 1.21630 0.95265 1.01230 1.00208 1.21046 0.95730 0.96589 0.89391 0.93195 1.21272 1.31951 1.12882 0.89322 0.91590 1.24941 0.94713 0.94839 0.98879 1.69874 1.36235 1.22653 1.23912 0.86511 0.79606 0.79449 0.82178 1.20486 1.21056 1.19611 1.84369 0.99626 1.72350 1.39668 1.21077 0.97189 1.04300 1.00650 1.21406 0.95756 0.95536 0.96530 1.20834 0.93508 1.03349 1.00684 1.20742 0.98724 0.96994 0.95108 1.20336 0.92556 1.05466 1.03427 1.17273 0.91769 0.90618 0.89088 1.44584 1.09607 1.50513 1.32922 1.20162 0.91967 0.94618 0.89346 1.19977 0.97909 0.92766 0.95321 1.21077 0.97798 1.00224 0.92722 1.21413 0.96142 0.93863 0.99819 1.21148 0.99977 0.96371 0.95857 1.21209 0.95551 0.99419 0.93283 1.15951 1.02342 0.94764 0.88010 1.25569 0.94656 0.94276 0.92946 1.81286 1.07415 1.07884 1.10356 0.88479 0.94269 0.96159 0.92623 0.83819 0.86814 0.86970 0.86864 0.75888 0.90842 0.91792 0.84620 0.85018 0.84840 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 8.88 37.16 0.33 -2.61 16 2 C 0.10 2.47 2.00 -27.88 -0.06 2.42 16 3 H 0.05 1.31 6.90 -51.92 -0.36 0.95 16 4 C -0.52 -13.91 7.07 -34.44 -0.24 -14.15 16 5 H 0.07 1.88 7.71 -52.49 -0.40 1.47 16 6 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 7 N -0.89 -24.40 11.39 55.43 0.63 -23.77 16 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 S -0.20 -4.48 19.76 -107.50 -2.12 -6.61 16 13 C -0.12 -2.42 6.06 -38.92 -0.24 -2.65 16 14 C -0.07 -1.44 8.84 -39.40 -0.35 -1.79 16 15 C -0.16 -2.94 10.04 -39.57 -0.40 -3.34 16 16 C -0.09 -1.51 10.04 -39.55 -0.40 -1.91 16 17 C -0.19 -3.11 9.31 -39.41 -0.37 -3.48 16 18 C 0.22 3.95 6.66 -83.49 -0.56 3.39 16 19 N -0.74 -11.33 5.68 -59.62 -0.34 -11.67 16 20 C 0.16 1.86 4.47 -5.20 -0.02 1.84 16 21 C -0.06 -0.55 5.28 -104.21 -0.55 -1.10 16 22 C -0.10 -0.73 9.66 -39.64 -0.38 -1.11 16 23 C -0.09 -0.55 10.04 -39.49 -0.40 -0.94 16 24 C -0.12 -0.68 10.03 -39.64 -0.40 -1.08 16 25 C -0.07 -0.57 9.76 -39.17 -0.38 -0.95 16 26 C -0.01 -0.07 5.73 -106.93 -0.61 -0.68 16 27 C 0.24 3.28 13.99 -22.49 -0.31 2.97 16 28 N -0.39 -6.57 18.53 41.82 0.78 -5.79 16 29 H 0.10 2.47 6.26 -51.93 -0.33 2.15 16 30 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.14 3.37 5.12 -52.49 -0.27 3.10 16 34 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 36 H 0.11 1.51 6.74 -52.49 -0.35 1.15 16 37 H 0.40 6.55 7.01 -40.82 -0.29 6.26 16 38 H 0.07 0.70 7.82 -51.93 -0.41 0.30 16 39 H 0.06 0.78 7.29 -51.93 -0.38 0.40 16 40 H 0.14 0.79 8.04 -52.49 -0.42 0.36 16 41 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 42 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 43 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 377.14 15.07 5.68 5.68 Total: -1.00 -30.59 377.14 -11.12 -41.71 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.30 Total: 7.37 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -5.43 Total: -23.39 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 1.07 Total: -41.23 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -4.48 SS G_CDS: -2.12 Total: -6.61 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.59 -11.12 -41.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109002087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.636 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds