Wall clock time and date at job start Tue Mar 31 2020 04:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.51228 * 2 1 4 4 C 1.53242 * 109.49266 * 120.06926 * 2 1 3 5 5 N 1.47078 * 108.51890 * 173.78744 * 4 2 1 6 6 C 1.34779 * 120.87979 * 128.83520 * 5 4 2 7 7 O 1.21515 * 119.99792 * 0.02562 * 6 5 4 8 8 O 1.34638 * 119.99974 * 179.97438 * 6 5 4 9 9 C 1.45201 * 116.99784 * 180.02562 * 8 6 5 10 10 C 1.52991 * 109.47154 * 60.00289 * 9 8 6 11 11 C 1.53003 * 109.46702 * 180.02562 * 9 8 6 12 12 C 1.52999 * 109.47080 * 300.00208 * 9 8 6 13 13 C 1.47080 * 118.23827 * 308.81477 * 5 4 2 14 14 C 1.53239 * 108.52292 * 51.18613 * 13 5 4 15 15 N 1.46898 * 109.49039 * 239.93474 * 2 1 3 16 16 C 1.46902 * 111.00019 * 52.78513 * 15 2 1 17 17 C 1.53002 * 109.47109 * 176.02590 * 16 15 2 18 18 H 1.09000 * 109.46706 * 301.63385 * 17 16 15 19 19 C 1.47201 * 109.46920 * 61.63097 * 17 16 15 20 20 N 4.91199 * 89.62369 * 226.70524 * 2 1 3 21 21 C 1.52990 * 109.47184 * 181.63216 * 17 16 15 22 22 C 1.50699 * 109.47318 * 174.99846 * 21 17 16 23 23 H 1.08000 * 119.99774 * 0.02562 * 22 21 17 24 24 C 1.37879 * 120.00223 * 179.72497 * 22 21 17 25 25 N 1.31513 * 119.99717 * 0.27479 * 24 22 21 26 26 Si 1.86799 * 120.00060 * 180.28084 * 24 22 21 27 27 H 1.48493 * 109.47467 * 59.99806 * 26 24 22 28 28 H 1.48502 * 109.47233 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.47068 * 299.99642 * 26 24 22 30 30 H 1.08999 * 109.47023 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 300.06256 * 1 2 3 32 32 H 1.08995 * 109.47294 * 60.06337 * 1 2 3 33 33 H 1.08998 * 109.62921 * 293.49754 * 4 2 1 34 34 H 1.09004 * 109.62788 * 53.88155 * 4 2 1 35 35 H 1.09000 * 109.47265 * 60.00214 * 10 9 8 36 36 H 1.09004 * 109.47482 * 179.97438 * 10 9 8 37 37 H 1.09003 * 109.47236 * 299.99492 * 10 9 8 38 38 H 1.08997 * 109.46848 * 60.00255 * 11 9 8 39 39 H 1.09000 * 109.46839 * 179.97438 * 11 9 8 40 40 H 1.08993 * 109.47260 * 299.99887 * 11 9 8 41 41 H 1.09000 * 109.47357 * 59.99908 * 12 9 8 42 42 H 1.09003 * 109.46956 * 180.02562 * 12 9 8 43 43 H 1.09008 * 109.47029 * 299.99707 * 12 9 8 44 44 H 1.09006 * 109.62616 * 170.89215 * 13 5 4 45 45 H 1.08994 * 109.62854 * 291.47178 * 13 5 4 46 46 H 1.08991 * 109.49639 * 186.21149 * 14 13 5 47 47 H 1.09008 * 109.49304 * 66.12691 * 14 13 5 48 48 H 1.08995 * 109.46932 * 56.03003 * 16 15 2 49 49 H 1.09000 * 109.47271 * 296.02798 * 16 15 2 50 50 H 1.09009 * 109.47168 * 55.00017 * 21 17 16 51 51 H 1.09001 * 109.47584 * 295.00170 * 21 17 16 52 52 H 0.97008 * 119.99652 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0414 -0.7238 1.2502 5 7 3.5043 -0.8433 1.1553 6 6 4.2978 -0.4495 2.1711 7 8 3.8064 0.0110 3.1826 8 8 5.6349 -0.5674 2.0655 9 6 6.4272 -0.1238 3.1985 10 6 6.0401 -0.9314 4.4389 11 6 7.9122 -0.3337 2.8957 12 6 6.1643 1.3615 3.4544 13 6 4.0782 -1.4042 -0.0773 14 6 3.4867 -0.6536 -1.2752 15 7 2.0202 -0.6938 -1.1985 16 6 1.4139 -0.1358 -2.4147 17 6 2.0208 -0.8143 -3.6445 18 1 3.1004 -0.6644 -3.6463 19 6 1.7256 -2.2558 -3.6053 20 7 1.4978 -3.3683 -3.5750 21 6 1.4190 -0.2048 -4.9122 22 6 2.1040 -0.7850 -6.1226 23 1 2.8897 -1.5157 -5.9999 24 6 1.7235 -0.3875 -7.3868 25 7 0.7664 0.5020 -7.5362 26 14 2.5673 -1.1125 -8.8874 27 1 2.3741 -2.5848 -8.9009 28 1 1.9791 -0.5254 -10.1181 29 1 4.0190 -0.8042 -8.8362 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 1.7777 -0.1504 2.1388 34 1 1.5931 -1.7157 1.3081 35 1 6.2274 -1.9896 4.2567 36 1 6.6352 -0.5987 5.2895 37 1 4.9821 -0.7814 4.6545 38 1 8.1876 0.2420 2.0120 39 1 8.5070 -0.0003 3.7460 40 1 8.0998 -1.3917 2.7131 41 1 5.1064 1.5115 3.6699 42 1 6.7595 1.6946 4.3047 43 1 6.4402 1.9369 2.5706 44 1 5.1612 -1.2805 -0.0662 45 1 3.8284 -2.4627 -0.1487 46 1 3.8156 -1.1276 -2.1999 47 1 3.8236 0.3829 -1.2574 48 1 1.6076 0.9359 -2.4584 49 1 0.3381 -0.3102 -2.3973 50 1 1.5602 0.8761 -4.8980 51 1 0.3537 -0.4315 -4.9540 52 1 0.4989 0.7819 -8.4256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110588731.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:49 Heat of formation + Delta-G solvation = -52.345523 kcal Electronic energy + Delta-G solvation = -30448.212521 eV Core-core repulsion = 26448.010531 eV Total energy + Delta-G solvation = -4000.201990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.07595 -39.50990 -37.43563 -36.29410 -34.99829 -34.12101 -33.55377 -32.74868 -31.39175 -28.42687 -27.68315 -27.63698 -27.23759 -26.02835 -23.54817 -22.86641 -21.98095 -21.58053 -20.20353 -19.35591 -18.03367 -17.00568 -16.70366 -16.55580 -16.30359 -15.69910 -15.44195 -15.12439 -14.72851 -14.68933 -14.60489 -14.27146 -13.88516 -13.71759 -13.33664 -12.98958 -12.77927 -12.76563 -12.44405 -12.36941 -12.26059 -12.20867 -12.16011 -12.00203 -11.93242 -11.74227 -11.63969 -11.54711 -11.34070 -11.26787 -11.20856 -11.06211 -11.02090 -10.63436 -10.59183 -10.56874 -10.14519 -10.11360 -9.58162 -9.28045 -8.95566 -8.48416 -8.25024 -6.12659 -4.16167 1.95122 2.68212 3.28778 3.33477 3.36797 3.59873 3.67521 3.75831 3.84950 4.38225 4.44486 4.49159 4.62894 4.66202 4.74676 4.83760 4.93493 5.07279 5.11118 5.18757 5.24091 5.25511 5.25992 5.30267 5.41161 5.45757 5.50493 5.52778 5.58304 5.58467 5.60935 5.68364 5.71296 5.76251 5.83467 5.89109 6.01721 6.02621 6.03678 6.15438 6.24941 6.27848 6.34862 6.43985 7.01437 7.06672 7.24688 7.38156 7.48165 7.81868 8.17624 8.19095 8.53311 8.88092 9.49496 10.98125 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016578 B = 0.002494 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.601129 B =11222.744672 C =12016.980747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.069 3.931 3 H 0.048 0.952 4 C 0.138 3.862 5 N -0.595 5.595 6 C 0.654 3.346 7 O -0.574 6.574 8 O -0.362 6.362 9 C 0.136 3.864 10 C -0.183 4.183 11 C -0.141 4.141 12 C -0.183 4.183 13 C 0.117 3.883 14 C 0.032 3.968 15 N -0.536 5.536 16 C 0.061 3.939 17 C 0.005 3.995 18 H 0.101 0.899 19 C 0.253 3.747 20 N -0.475 5.475 21 C 0.032 3.968 22 C -0.528 4.528 23 H 0.056 0.944 24 C 0.063 3.937 25 N -0.891 5.891 26 Si 0.891 3.109 27 H -0.277 1.277 28 H -0.286 1.286 29 H -0.275 1.275 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.099 0.901 47 H 0.043 0.957 48 H 0.053 0.947 49 H 0.088 0.912 50 H 0.037 0.963 51 H 0.027 0.973 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.379 2.550 22.502 24.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.040 4.040 3 H 0.066 0.934 4 C 0.017 3.983 5 N -0.335 5.335 6 C 0.409 3.591 7 O -0.464 6.464 8 O -0.277 6.277 9 C 0.099 3.901 10 C -0.240 4.240 11 C -0.198 4.198 12 C -0.240 4.240 13 C -0.006 4.006 14 C -0.097 4.097 15 N -0.262 5.262 16 C -0.067 4.067 17 C -0.017 4.017 18 H 0.119 0.881 19 C -0.064 4.064 20 N -0.151 5.151 21 C -0.006 4.006 22 C -0.566 4.566 23 H 0.074 0.926 24 C -0.139 4.139 25 N -0.529 5.529 26 Si 0.719 3.281 27 H -0.202 1.202 28 H -0.212 1.212 29 H -0.201 1.201 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.117 0.883 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.106 0.894 50 H 0.055 0.945 51 H 0.045 0.955 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.728 0.634 22.813 24.434 hybrid contribution 0.792 0.913 -1.099 1.634 sum 9.520 1.547 21.714 23.760 Atomic orbital electron populations 1.21880 0.93119 1.03182 1.02503 1.21989 0.96168 0.95743 0.90081 0.93428 1.21811 0.76368 1.01830 0.98306 1.47050 1.06299 1.64537 1.15616 1.17951 0.80864 0.77284 0.82955 1.90872 1.75311 1.50444 1.29743 1.86304 1.16903 1.79273 1.45192 1.22057 0.89818 0.94567 0.83680 1.22507 1.04875 0.99862 0.96728 1.21859 0.91748 1.03248 1.02951 1.22511 1.05096 0.94134 1.02255 1.21882 0.98442 0.98245 0.82027 1.22634 0.88216 0.99739 0.99066 1.62071 1.05996 1.55786 1.02298 1.22317 1.00267 0.97043 0.87081 1.19353 1.02121 0.82670 0.97566 0.88147 1.28794 0.92398 0.94612 0.90558 1.80994 1.09714 1.13221 1.11201 1.19158 0.96753 0.96521 0.88182 1.21082 1.20013 1.24689 0.90782 0.92577 1.24947 0.94949 0.94899 0.99111 1.69927 1.28790 1.31047 1.23184 0.86656 0.79824 0.79561 0.82053 1.20209 1.21185 1.20050 0.91373 0.91959 0.91284 0.88513 0.90339 0.92224 0.91248 0.89403 0.91384 0.90216 0.91450 0.89412 0.91247 0.92154 0.88774 0.90393 0.88264 0.93874 0.92879 0.89409 0.94484 0.95498 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.72 37.16 0.32 -1.13 16 2 C 0.07 0.76 2.60 -67.58 -0.18 0.58 16 3 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 4 C 0.14 1.52 5.88 -3.60 -0.02 1.49 16 5 N -0.59 -6.99 3.01 -178.25 -0.54 -7.53 16 6 C 0.65 8.30 7.75 54.06 0.42 8.72 16 7 O -0.57 -8.11 11.33 -19.28 -0.22 -8.33 16 8 O -0.36 -4.16 8.57 -40.32 -0.35 -4.51 16 9 C 0.14 1.26 1.13 -90.62 -0.10 1.15 16 10 C -0.18 -1.63 8.37 37.15 0.31 -1.32 16 11 C -0.14 -0.96 8.85 37.16 0.33 -0.63 16 12 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 13 C 0.12 1.28 6.61 -3.60 -0.02 1.25 16 14 C 0.03 0.37 5.20 -3.70 -0.02 0.35 16 15 N -0.54 -6.73 4.19 -226.34 -0.95 -7.68 16 16 C 0.06 0.85 3.80 -3.82 -0.01 0.84 16 17 C 0.00 0.08 1.75 -93.41 -0.16 -0.08 16 18 H 0.10 1.62 6.06 -51.93 -0.31 1.30 16 19 C 0.25 5.02 13.42 -20.76 -0.28 4.74 16 20 N -0.47 -10.31 18.54 42.15 0.78 -9.53 16 21 C 0.03 0.73 4.42 -27.89 -0.12 0.60 16 22 C -0.53 -13.68 8.60 -34.44 -0.30 -13.98 16 23 H 0.06 1.44 7.59 -52.49 -0.40 1.04 16 24 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 25 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 26 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.70 6.41 -51.93 -0.33 0.37 16 33 H 0.10 1.06 7.06 -51.93 -0.37 0.70 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.98 5.88 -51.93 -0.31 0.68 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 1.00 5.88 -51.93 -0.31 0.69 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 44 H 0.09 0.94 6.99 -51.93 -0.36 0.58 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.10 1.20 5.62 -51.93 -0.29 0.91 16 47 H 0.04 0.50 8.14 -51.92 -0.42 0.07 16 48 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.09 1.24 6.46 -51.93 -0.34 0.91 16 50 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 51 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 52 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 407.25 15.07 6.14 6.14 Total: -1.00 -30.70 407.25 -7.95 -38.65 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -8.91 Total: -1.68 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 0.38 Total: 2.87 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.03 Total: -49.10 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.56 Total: -12.84 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.70 -7.95 -38.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110588731.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.693 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds