Wall clock time and date at job start Tue Mar 31 2020 04:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.51228 * 2 1 4 4 C 1.53242 * 109.49266 * 120.06926 * 2 1 3 5 5 N 1.47078 * 108.51890 * 173.78744 * 4 2 1 6 6 C 1.34779 * 120.87979 * 128.83520 * 5 4 2 7 7 O 1.21515 * 119.99792 * 0.02562 * 6 5 4 8 8 O 1.34638 * 119.99974 * 179.97438 * 6 5 4 9 9 C 1.45201 * 116.99784 * 180.02562 * 8 6 5 10 10 C 1.52991 * 109.47154 * 60.00289 * 9 8 6 11 11 C 1.53003 * 109.46702 * 180.02562 * 9 8 6 12 12 C 1.52999 * 109.47080 * 300.00208 * 9 8 6 13 13 C 1.47080 * 118.23827 * 308.81477 * 5 4 2 14 14 C 1.53239 * 108.52292 * 51.18613 * 13 5 4 15 15 N 1.46898 * 109.49039 * 239.93474 * 2 1 3 16 16 C 1.46902 * 111.00019 * 52.78513 * 15 2 1 17 17 C 1.53002 * 109.47109 * 176.02590 * 16 15 2 18 18 H 1.09000 * 109.46706 * 301.63385 * 17 16 15 19 19 C 1.47201 * 109.46920 * 61.63097 * 17 16 15 20 20 N 4.91199 * 89.62369 * 226.70524 * 2 1 3 21 21 C 1.52990 * 109.47184 * 181.63216 * 17 16 15 22 22 C 1.50699 * 109.47318 * 174.99846 * 21 17 16 23 23 H 1.08000 * 119.99774 * 0.02562 * 22 21 17 24 24 C 1.37879 * 120.00223 * 179.72497 * 22 21 17 25 25 N 1.31513 * 119.99717 * 0.27479 * 24 22 21 26 26 Si 1.86799 * 120.00060 * 180.28084 * 24 22 21 27 27 H 1.48493 * 109.47467 * 59.99806 * 26 24 22 28 28 H 1.48502 * 109.47233 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.47068 * 299.99642 * 26 24 22 30 30 H 1.08999 * 109.47023 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 300.06256 * 1 2 3 32 32 H 1.08995 * 109.47294 * 60.06337 * 1 2 3 33 33 H 1.08998 * 109.62921 * 293.49754 * 4 2 1 34 34 H 1.09004 * 109.62788 * 53.88155 * 4 2 1 35 35 H 1.09000 * 109.47265 * 60.00214 * 10 9 8 36 36 H 1.09004 * 109.47482 * 179.97438 * 10 9 8 37 37 H 1.09003 * 109.47236 * 299.99492 * 10 9 8 38 38 H 1.08997 * 109.46848 * 60.00255 * 11 9 8 39 39 H 1.09000 * 109.46839 * 179.97438 * 11 9 8 40 40 H 1.08993 * 109.47260 * 299.99887 * 11 9 8 41 41 H 1.09000 * 109.47357 * 59.99908 * 12 9 8 42 42 H 1.09003 * 109.46956 * 180.02562 * 12 9 8 43 43 H 1.09008 * 109.47029 * 299.99707 * 12 9 8 44 44 H 1.09006 * 109.62616 * 170.89215 * 13 5 4 45 45 H 1.08994 * 109.62854 * 291.47178 * 13 5 4 46 46 H 1.08991 * 109.49639 * 186.21149 * 14 13 5 47 47 H 1.09008 * 109.49304 * 66.12691 * 14 13 5 48 48 H 1.08995 * 109.46932 * 56.03003 * 16 15 2 49 49 H 1.09000 * 109.47271 * 296.02798 * 16 15 2 50 50 H 1.09009 * 109.47168 * 55.00017 * 21 17 16 51 51 H 1.09001 * 109.47584 * 295.00170 * 21 17 16 52 52 H 0.97008 * 119.99652 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0414 -0.7238 1.2502 5 7 3.5043 -0.8433 1.1553 6 6 4.2978 -0.4495 2.1711 7 8 3.8064 0.0110 3.1826 8 8 5.6349 -0.5674 2.0655 9 6 6.4272 -0.1238 3.1985 10 6 6.0401 -0.9314 4.4389 11 6 7.9122 -0.3337 2.8957 12 6 6.1643 1.3615 3.4544 13 6 4.0782 -1.4042 -0.0773 14 6 3.4867 -0.6536 -1.2752 15 7 2.0202 -0.6938 -1.1985 16 6 1.4139 -0.1358 -2.4147 17 6 2.0208 -0.8143 -3.6445 18 1 3.1004 -0.6644 -3.6463 19 6 1.7256 -2.2558 -3.6053 20 7 1.4978 -3.3683 -3.5750 21 6 1.4190 -0.2048 -4.9122 22 6 2.1040 -0.7850 -6.1226 23 1 2.8897 -1.5157 -5.9999 24 6 1.7235 -0.3875 -7.3868 25 7 0.7664 0.5020 -7.5362 26 14 2.5673 -1.1125 -8.8874 27 1 2.3741 -2.5848 -8.9009 28 1 1.9791 -0.5254 -10.1181 29 1 4.0190 -0.8042 -8.8362 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 1.7777 -0.1504 2.1388 34 1 1.5931 -1.7157 1.3081 35 1 6.2274 -1.9896 4.2567 36 1 6.6352 -0.5987 5.2895 37 1 4.9821 -0.7814 4.6545 38 1 8.1876 0.2420 2.0120 39 1 8.5070 -0.0003 3.7460 40 1 8.0998 -1.3917 2.7131 41 1 5.1064 1.5115 3.6699 42 1 6.7595 1.6946 4.3047 43 1 6.4402 1.9369 2.5706 44 1 5.1612 -1.2805 -0.0662 45 1 3.8284 -2.4627 -0.1487 46 1 3.8156 -1.1276 -2.1999 47 1 3.8236 0.3829 -1.2574 48 1 1.6076 0.9359 -2.4584 49 1 0.3381 -0.3102 -2.3973 50 1 1.5602 0.8761 -4.8980 51 1 0.3537 -0.4315 -4.9540 52 1 0.4989 0.7819 -8.4256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110588731.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:48 Heat of formation + Delta-G solvation = -69.762734 kcal Electronic energy + Delta-G solvation = -30448.967788 eV Core-core repulsion = 26448.010531 eV Total energy + Delta-G solvation = -4000.957257 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.97434 -40.48832 -38.51381 -37.57343 -36.12683 -35.45622 -34.79058 -33.94505 -32.82867 -29.67267 -28.33693 -28.29748 -28.14898 -27.51911 -24.68003 -24.20967 -23.14693 -22.80173 -21.09785 -20.23435 -18.97433 -18.46332 -18.21586 -17.71067 -17.23717 -16.87067 -16.38846 -16.28614 -16.21791 -15.62399 -15.46678 -15.36001 -14.94261 -14.61410 -14.47369 -14.36544 -14.13845 -13.90413 -13.67565 -13.38060 -13.15550 -13.11212 -13.05624 -13.00354 -12.96217 -12.83975 -12.78112 -12.68798 -12.54162 -12.44958 -12.43513 -12.29519 -12.25474 -12.10568 -11.90889 -11.62788 -11.36949 -11.30436 -11.09131 -11.03987 -10.53384 -9.90252 -9.24055 -8.18120 -6.26135 1.10405 1.42147 1.44108 1.50625 1.73026 2.09165 2.16480 2.42384 2.73940 2.85212 3.17665 3.35260 3.75462 3.77545 3.82970 3.85873 3.92610 3.97649 4.16831 4.21251 4.30332 4.36073 4.43311 4.49382 4.60998 4.64111 4.65791 4.73577 4.75054 4.77096 4.79221 4.86585 4.87602 4.90404 4.94015 4.97825 5.05575 5.12687 5.13090 5.29129 5.30528 5.36539 5.41777 5.47458 5.48171 5.62629 5.79856 5.97144 6.10047 6.21716 6.31831 6.84942 6.95752 7.24748 7.42440 8.92515 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016578 B = 0.002494 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.601129 B =11222.744672 C =12016.980747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 H 0.047 0.953 4 C 0.141 3.859 5 N -0.597 5.597 6 C 0.651 3.349 7 O -0.592 6.592 8 O -0.367 6.367 9 C 0.124 3.876 10 C -0.178 4.178 11 C -0.136 4.136 12 C -0.178 4.178 13 C 0.122 3.878 14 C 0.033 3.967 15 N -0.543 5.543 16 C 0.072 3.928 17 C 0.016 3.984 18 H 0.120 0.880 19 C 0.265 3.735 20 N -0.508 5.508 21 C 0.039 3.961 22 C -0.538 4.538 23 H 0.055 0.945 24 C 0.012 3.988 25 N -0.923 5.923 26 Si 0.946 3.054 27 H -0.281 1.281 28 H -0.284 1.284 29 H -0.262 1.262 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.105 0.895 45 H 0.074 0.926 46 H 0.096 0.904 47 H 0.048 0.952 48 H 0.066 0.934 49 H 0.086 0.914 50 H 0.034 0.966 51 H 0.002 0.998 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.047 2.803 23.331 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.034 4.034 3 H 0.065 0.935 4 C 0.020 3.980 5 N -0.337 5.337 6 C 0.406 3.594 7 O -0.483 6.483 8 O -0.282 6.282 9 C 0.088 3.912 10 C -0.235 4.235 11 C -0.193 4.193 12 C -0.235 4.235 13 C 0.000 4.000 14 C -0.096 4.096 15 N -0.269 5.269 16 C -0.056 4.056 17 C -0.005 4.005 18 H 0.137 0.863 19 C -0.051 4.051 20 N -0.186 5.186 21 C 0.000 4.000 22 C -0.576 4.576 23 H 0.074 0.926 24 C -0.187 4.187 25 N -0.563 5.563 26 Si 0.772 3.228 27 H -0.207 1.207 28 H -0.209 1.209 29 H -0.187 1.187 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.123 0.877 45 H 0.092 0.908 46 H 0.114 0.886 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.104 0.896 50 H 0.052 0.948 51 H 0.020 0.980 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.414 0.883 23.648 25.854 hybrid contribution 0.289 0.837 -1.297 1.570 sum 10.703 1.719 22.351 24.841 Atomic orbital electron populations 1.21861 0.92203 1.03015 1.03253 1.21983 0.96833 0.95405 0.89172 0.93461 1.21801 0.76135 1.01852 0.98240 1.47148 1.06547 1.64305 1.15670 1.18091 0.81325 0.77131 0.82838 1.90867 1.75755 1.51255 1.30471 1.86311 1.16297 1.79255 1.46308 1.22417 0.90902 0.94618 0.83301 1.22455 1.03571 0.99984 0.97500 1.21881 0.89919 1.03500 1.03994 1.22459 1.03771 0.94185 1.03113 1.21858 0.98993 0.97792 0.81388 1.22639 0.87638 1.00098 0.99184 1.62044 1.06591 1.56126 1.02156 1.22136 0.99965 0.97284 0.86263 1.19288 1.03107 0.81129 0.96991 0.86255 1.29204 0.91392 0.94957 0.89553 1.80997 1.10907 1.14351 1.12295 1.18974 0.95191 0.96382 0.89464 1.21516 1.19780 1.24201 0.92104 0.92649 1.25697 0.95682 0.95437 1.01900 1.70025 1.30177 1.32420 1.23678 0.85780 0.79557 0.78332 0.79105 1.20693 1.20924 1.18691 0.91969 0.90214 0.91560 0.88542 0.90285 0.92173 0.89071 0.91952 0.91313 0.87957 0.91302 0.91949 0.89092 0.92193 0.87722 0.90765 0.88614 0.93359 0.91550 0.89585 0.94802 0.97974 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.72 71.98 0.63 -2.02 16 2 C 0.07 1.54 2.60 45.00 0.12 1.66 16 3 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 4 C 0.14 2.96 5.88 86.35 0.51 3.47 16 5 N -0.60 -13.47 3.01 -948.26 -2.85 -16.32 16 6 C 0.65 16.12 7.75 129.79 1.01 17.13 16 7 O -0.59 -16.71 11.33 19.79 0.22 -16.48 16 8 O -0.37 -8.06 8.57 -55.48 -0.48 -8.54 16 9 C 0.12 2.12 1.13 -10.80 -0.01 2.10 16 10 C -0.18 -2.97 8.37 71.98 0.60 -2.36 16 11 C -0.14 -1.53 8.85 71.98 0.64 -0.89 16 12 C -0.18 -3.00 8.37 71.98 0.60 -2.40 16 13 C 0.12 2.51 6.61 86.35 0.57 3.08 16 14 C 0.03 0.71 5.20 86.38 0.45 1.16 16 15 N -0.54 -12.89 4.19 -870.01 -3.65 -16.54 16 16 C 0.07 1.92 3.80 86.30 0.33 2.24 16 17 C 0.02 0.56 1.75 -12.60 -0.02 0.53 16 18 H 0.12 3.64 6.06 -2.39 -0.01 3.62 16 19 C 0.27 10.34 13.42 89.44 1.20 11.54 16 20 N -0.51 -21.88 18.54 20.01 0.37 -21.51 16 21 C 0.04 1.72 4.42 29.84 0.13 1.85 16 22 C -0.54 -27.69 8.60 25.60 0.22 -27.47 16 23 H 0.06 2.80 7.59 -2.91 -0.02 2.78 16 24 C 0.01 0.64 5.46 84.66 0.46 1.10 16 25 N -0.92 -52.23 13.29 21.45 0.28 -51.95 16 26 Si 0.95 42.67 29.54 68.60 2.03 44.70 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 28 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 29 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.25 6.41 -2.39 -0.02 1.24 16 33 H 0.10 2.05 7.06 -2.39 -0.02 2.03 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.06 1.39 5.88 -2.39 -0.01 1.37 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 1.40 5.88 -2.39 -0.01 1.38 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.10 1.93 6.99 -2.38 -0.02 1.92 16 45 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.10 2.15 5.62 -2.39 -0.01 2.14 16 47 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 48 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.09 2.35 6.46 -2.39 -0.02 2.34 16 50 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 51 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 52 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -65.41 407.25 4.26 -61.15 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.90 Total: 14.78 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 7.43 Total: 10.72 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -5.85 Total: -106.32 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.25 Total: -25.02 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -65.41 4.26 -61.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110588731.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.614 kcal (2) G-P(sol) polarization free energy of solvation -65.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds