Wall clock time and date at job start Tue Mar 31 2020 08:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86805 * 119.99830 * 2 1 4 4 H 1.48504 * 109.46874 * 269.99375 * 3 2 1 5 5 H 1.48490 * 109.47249 * 29.99836 * 3 2 1 6 6 H 1.48503 * 109.47144 * 149.99940 * 3 2 1 7 7 C 1.38975 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00171 * 186.35768 * 7 2 1 9 9 N 1.36983 * 119.99686 * 6.36164 * 7 2 1 10 10 C 1.34775 * 119.99861 * 60.15834 * 9 7 2 11 11 O 1.21633 * 119.99889 * 186.38579 * 10 9 7 12 12 C 1.47357 * 120.00234 * 6.37941 * 10 9 7 13 13 C 1.41312 * 126.42083 * 7.96636 * 12 10 9 14 14 N 1.30446 * 108.02866 * 180.02562 * 13 12 10 15 15 N 1.39938 * 108.91048 * 359.97438 * 14 13 12 16 16 C 1.46505 * 125.74567 * 179.97438 * 15 14 13 17 17 C 1.50693 * 109.47134 * 305.02285 * 16 15 14 18 18 C 1.38237 * 120.00398 * 269.72998 * 17 16 15 19 19 C 1.38236 * 120.00302 * 179.76873 * 18 17 16 20 20 C 1.38237 * 119.99647 * 0.50973 * 19 18 17 21 21 C 1.38234 * 120.00013 * 359.73888 * 20 19 18 22 22 C 1.38232 * 120.00079 * 0.02562 * 21 20 19 23 23 C 1.34286 * 108.49975 * 359.73142 * 15 14 13 24 24 C 1.46493 * 119.99783 * 239.87616 * 9 7 2 25 25 C 1.54267 * 110.03231 * 59.91737 * 24 9 7 26 26 C 1.54966 * 104.15840 * 217.13292 * 25 24 9 27 27 C 1.54889 * 102.77677 * 37.89186 * 26 25 24 28 28 C 1.53877 * 110.03354 * 302.69781 * 24 9 7 29 29 H 0.97001 * 120.00026 * 4.95725 * 1 2 3 30 30 H 1.08001 * 125.99109 * 359.97438 * 13 12 10 31 31 H 1.08999 * 109.47317 * 65.03176 * 16 15 14 32 32 H 1.09002 * 109.46309 * 185.02235 * 16 15 14 33 33 H 1.08003 * 119.99775 * 359.97438 * 18 17 16 34 34 H 1.07998 * 119.99875 * 180.22513 * 19 18 17 35 35 H 1.08003 * 119.99812 * 179.73008 * 20 19 18 36 36 H 1.07998 * 119.99715 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.99783 * 179.97438 * 22 21 20 38 38 H 1.07993 * 126.30121 * 180.26519 * 23 15 14 39 39 H 1.09006 * 110.02085 * 181.30870 * 24 9 7 40 40 H 1.08996 * 110.48830 * 335.78484 * 25 24 9 41 41 H 1.09004 * 110.48792 * 98.42703 * 25 24 9 42 42 H 1.08995 * 110.72677 * 279.57179 * 26 25 24 43 43 H 1.09008 * 110.92296 * 156.29351 * 26 25 24 44 44 H 1.09005 * 110.48096 * 203.40212 * 27 26 25 45 45 H 1.08998 * 110.60291 * 80.81879 * 27 26 25 46 46 H 1.09003 * 110.03304 * 238.56708 * 28 24 9 47 47 H 1.09000 * 110.03555 * 0.02562 * 28 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0090 -1.2035 0.0005 8 1 3.0840 -1.2064 0.1041 9 7 1.3304 -2.3862 -0.1304 10 6 0.5923 -2.6211 -1.2333 11 8 -0.1019 -3.6176 -1.2997 12 6 0.6262 -1.6705 -2.3588 13 6 1.4929 -0.5628 -2.4956 14 7 1.2143 0.0309 -3.6232 15 7 0.1719 -0.6582 -4.2532 16 6 -0.4310 -0.3066 -5.5413 17 6 -0.9065 1.1227 -5.5000 18 6 -2.1937 1.4114 -5.0868 19 6 -2.6282 2.7230 -5.0444 20 6 -1.7790 3.7451 -5.4251 21 6 -0.4934 3.4561 -5.8432 22 6 -0.0573 2.1449 -5.8810 23 6 -0.1790 -1.6990 -3.4806 24 6 1.4120 -3.3982 0.9256 25 6 0.8834 -2.8193 2.2543 26 6 1.8098 -3.4371 3.3321 27 6 3.1938 -3.4342 2.6367 28 6 2.8802 -3.7895 1.1685 29 1 -0.4850 0.8369 -0.0726 30 1 2.2524 -0.2602 -1.7899 31 1 0.3100 -0.4204 -6.3325 32 1 -1.2768 -0.9654 -5.7383 33 1 -2.8588 0.6125 -4.7940 34 1 -3.6327 2.9488 -4.7181 35 1 -2.1199 4.7695 -5.3961 36 1 0.1699 4.2546 -6.1410 37 1 0.9469 1.9190 -6.2080 38 1 -0.9509 -2.4231 -3.6954 39 1 0.8327 -4.2780 0.6450 40 1 0.9670 -1.7326 2.2570 41 1 -0.1502 -3.1238 2.4187 42 1 1.4994 -4.4543 3.5705 43 1 1.8276 -2.8197 4.2303 44 1 3.8453 -4.1870 3.0806 45 1 3.6532 -2.4479 2.7008 46 1 3.0133 -4.8592 1.0066 47 1 3.5322 -3.2260 0.5010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125298487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:00 Heat of formation + Delta-G solvation = 77.372203 kcal Electronic energy + Delta-G solvation = -29850.992515 eV Core-core repulsion = 26000.579854 eV Total energy + Delta-G solvation = -3850.412661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = -0.32 seconds Orbital eigenvalues (eV) -40.44203 -39.10571 -38.46226 -36.36339 -34.34133 -33.52297 -31.35626 -30.87375 -30.32850 -29.14858 -27.87803 -27.11523 -25.71092 -24.89942 -22.58953 -21.85272 -21.43569 -20.01132 -19.82291 -19.21060 -19.07636 -17.25378 -16.62918 -15.71413 -15.59498 -15.45206 -15.24566 -14.90774 -14.48763 -14.15716 -14.13369 -13.60075 -13.45925 -13.35959 -13.15115 -12.78102 -12.54279 -12.48217 -12.35794 -12.16717 -11.85916 -11.44337 -11.19006 -11.03510 -10.98350 -10.83832 -10.62454 -10.52510 -10.41749 -10.36094 -10.28144 -9.93656 -9.89883 -9.55865 -8.94419 -8.87605 -8.83761 -8.47696 -8.28646 -7.55940 -7.02397 -6.29627 -4.20488 1.27359 1.45416 2.56718 3.13329 3.17591 3.22253 3.26601 3.48366 3.91920 4.07065 4.60943 4.78039 4.86450 4.93288 5.00451 5.08987 5.12395 5.15777 5.37193 5.44296 5.48789 5.54704 5.60362 5.64091 5.66758 5.96015 6.03121 6.09705 6.15065 6.29114 6.38382 6.40846 6.45278 6.47839 6.51572 6.51978 6.58506 6.61001 6.62058 6.71988 6.81151 6.92438 7.00844 7.04138 7.21367 7.40342 7.45073 7.66749 7.72554 8.12397 8.61228 8.73220 9.00073 9.72876 10.15953 10.71191 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016646 B = 0.003621 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.666468 B = 7730.607482 C = 8501.762486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.062 3.938 3 Si 0.883 3.117 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.352 4.352 8 H 0.081 0.919 9 N -0.444 5.444 10 C 0.590 3.410 11 O -0.618 6.618 12 C -0.212 4.212 13 C 0.104 3.896 14 N -0.328 5.328 15 N -0.379 5.379 16 C 0.180 3.820 17 C -0.101 4.101 18 C -0.098 4.098 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.126 4.126 22 C -0.083 4.083 23 C 0.080 3.920 24 C 0.137 3.863 25 C -0.119 4.119 26 C -0.123 4.123 27 C -0.115 4.115 28 C -0.127 4.127 29 H 0.269 0.731 30 H 0.210 0.790 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.169 0.831 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.065 0.935 46 H 0.050 0.950 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.448 3.112 -7.557 8.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.148 4.148 3 Si 0.708 3.292 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.480 4.480 8 H 0.098 0.902 9 N -0.163 5.163 10 C 0.382 3.618 11 O -0.505 6.505 12 C -0.226 4.226 13 C -0.083 4.083 14 N -0.148 5.148 15 N -0.160 5.160 16 C 0.058 3.942 17 C -0.101 4.101 18 C -0.117 4.117 19 C -0.143 4.143 20 C -0.134 4.134 21 C -0.144 4.144 22 C -0.101 4.101 23 C -0.068 4.068 24 C 0.033 3.967 25 C -0.158 4.158 26 C -0.161 4.161 27 C -0.153 4.153 28 C -0.165 4.165 29 H 0.079 0.921 30 H 0.225 0.775 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.186 0.814 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.734 3.725 -8.412 9.229 hybrid contribution -0.091 0.496 0.776 0.925 sum -0.825 4.221 -7.636 8.764 Atomic orbital electron populations 1.69862 1.05912 1.27884 1.43140 1.25689 0.95335 0.99493 0.94277 0.86714 0.80145 0.82792 0.79583 1.18679 1.20751 1.18875 1.18955 0.91319 0.82345 1.55429 0.90197 1.42924 1.45150 1.14885 1.13325 1.17352 0.79791 0.83049 0.81640 1.90553 1.45117 1.31652 1.83212 1.20073 1.03149 1.02257 0.97134 1.25397 0.98686 0.91949 0.92248 1.77106 1.05582 1.21093 1.10975 1.48219 1.28969 1.21718 1.17097 1.20389 0.97703 0.93047 0.83053 1.19866 0.94326 0.95068 1.00878 1.21059 0.95529 0.96951 0.98163 1.21091 0.99928 0.92791 1.00508 1.21154 0.94218 0.99029 0.99011 1.21120 0.96107 0.96500 1.00710 1.21026 0.98874 0.92321 0.97925 1.22667 0.99850 0.92223 0.92050 1.21527 0.94185 0.92386 0.88585 1.22573 0.97118 1.02647 0.93416 1.22455 0.96032 0.99732 0.97895 1.22245 0.96640 1.00770 0.95667 1.22405 0.98129 0.99517 0.96464 0.92067 0.77453 0.89596 0.88455 0.86136 0.86126 0.86285 0.86132 0.85868 0.81412 0.90602 0.89336 0.93237 0.92650 0.92586 0.93133 0.91662 0.93091 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.09 12.15 55.50 0.67 -21.42 16 2 C 0.06 1.52 2.97 -17.46 -0.05 1.47 16 3 Si 0.88 19.23 27.66 -169.99 -4.70 14.53 16 4 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.35 -8.47 5.08 -14.98 -0.08 -8.55 16 8 H 0.08 1.87 7.12 -52.49 -0.37 1.50 16 9 N -0.44 -10.90 2.32 -107.76 -0.25 -11.15 16 10 C 0.59 15.43 6.96 -12.55 -0.09 15.34 16 11 O -0.62 -17.26 16.28 5.25 0.09 -17.18 16 12 C -0.21 -5.08 5.19 -105.06 -0.54 -5.62 16 13 C 0.10 2.41 8.74 -16.97 -0.15 2.26 16 14 N -0.33 -7.09 12.32 30.87 0.38 -6.71 16 15 N -0.38 -7.10 3.64 -61.96 -0.23 -7.32 16 16 C 0.18 2.46 6.62 -5.19 -0.03 2.43 16 17 C -0.10 -1.43 5.30 -104.63 -0.55 -1.98 16 18 C -0.10 -1.35 9.70 -39.58 -0.38 -1.73 16 19 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 20 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 21 C -0.13 -1.59 10.05 -39.58 -0.40 -1.98 16 22 C -0.08 -1.14 9.70 -39.58 -0.38 -1.52 16 23 C 0.08 1.64 11.26 -16.52 -0.19 1.46 16 24 C 0.14 3.02 3.28 -66.81 -0.22 2.80 16 25 C -0.12 -2.47 6.42 -25.03 -0.16 -2.63 16 26 C -0.12 -2.04 6.91 -24.70 -0.17 -2.21 16 27 C -0.12 -1.88 6.83 -25.07 -0.17 -2.05 16 28 C -0.13 -2.35 6.26 -25.61 -0.16 -2.51 16 29 H 0.27 7.02 8.32 -40.82 -0.34 6.68 16 30 H 0.21 4.91 3.25 -52.49 -0.17 4.74 16 31 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 32 H 0.10 1.06 8.00 -51.93 -0.42 0.64 16 33 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 34 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.17 3.05 8.06 -52.49 -0.42 2.63 16 39 H 0.08 1.78 6.97 -51.93 -0.36 1.42 16 40 H 0.09 2.07 7.09 -51.93 -0.37 1.70 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.07 1.41 6.82 -51.93 -0.35 1.05 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -30.80 379.89 -9.51 -40.31 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -6.67 Total: 12.05 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -4.53 Total: -8.82 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.58 Total: -46.61 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.09 Total: -17.18 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.70 Total: 14.53 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.80 -9.51 -40.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125298487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.683 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.32 seconds